Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------->GLK1(2) --------->ZAT18                                                            ------->TEIL <---------ZAT18                                            <---------ARR14(2)                      - ---------ANAC58                                            --------->ARR14(2)                      < ---------ANAC58                     <---------ATHB12   --------->At4g35610 <---------ARR14(2)      < -----ANAC58                    ------>NtERF2    <---------GLK1(2)   <---------ANAC46               - -----ANAC58             --------->ARR14(2)--------->ARR14(2)        <---------ANAC58               - ---->ALFIN1             <---------ARR14(2)<---------ARR14(2)        <---------ANAC58 <------ZmHOX2a(1)   gtgcgtacttggagagtacgagtagcgaattcgacaccaatggtggatttggattctaagcagaactcgttgcgagtgaatctagagaggagattagact  3119500           --------->ATERF1(1)          <---------ATERF1(1)         <---------GLK1(2)       --------->LBD16     <---------LBD16    ------>NtERF2   <---------ALFIN1 <---------RAP2.6(3) <---------ATERF1(1)                                            --------->ANAC46 ------>NtERF2                                                  --------->ANAC58 -------->At1g77200                                             --------->ANAC58   <---------HSFB2a(2) ---------ETT(1)                                         <---------MYB52(1)        --------->HSFB2a(2) ---------ATERF1(2)         <----------DOF2           --------->SPL7          <---------DAG2        - -------->ANAC46   --------->YAB1                   <-----------HVH21         <----------DOF2 <------ ---------->HVH21 <------ZmHOX2a(2)                 <---------SPL7       <-----------GT1<------ZmHOX2a(1)   tgccgacaccggagtctccgatcaaaaccactttaaacaagtagtcgtattcttcgtccggtcttctcgccattgttacacttttctcgaggagtgcttt  3119600                                                    --------->AHL20(2)                                                    <---------AHL20(2)                                                   <---------AHL20(1)                                                   --------->AHL20(2)                                                   <---------AHL20(2)                                                --------->AHL20(2)                                                --------->AHL20(1)                                                <---------AHL20(2)                                            --------->AHL20(2)          --------->ARR14(2)                                           <---------AHL20(2)           <---------ARR11(3)                                           --------->AHL20(2)           --------->ARR11(3)                                        --------->AHL20(2)              <-----------ARR10                                       --------->AHL20(2)    <----------DOF2         <-----------GT1                            --------->At4g35610<---------AHL20(2)       <---------ARR14(2)          < -------->CCA1(2)  ---------->DOF2     <---------AHL20(2) <-----------GT1 ------>ZmHOX2a(2)     <---- ----DOF2      ------------------------>ANAC81 --------->AHL20(2)      <---------CCA1(2)        <----   agatttgggattttgaaatagaaaaggagaagatgacagaaataaataaataatttaatttctctttccccttggatcttctctattcaaccttctcggc  3119700                          <---------ANAC58                                                        ---                      <----------DOF2                                                           -----           --------->MYB46(3)                                                                   -----          *TSS       <---------DAG2                                             --------->AtLEC2-----         --------->MYB52(1)        --------->ALFIN1                  <---------AHL20(2) ---------->DOF2 ---------YAB1     <---------ARR11(3)                          --------->ANAC55(2)     <---------AHL20(2) -----ANAC58       --------->ARR11(3)                    ----------->TBP    <-----------GT1   ------- -----ANAC58------->GAMYB <---------ANAC58       ---------->DOF2 <---------AHL20(2)<---------------AGL15   ttgttattgcccaacgacgaagaccttttcttgtcaagttgggcttactaaaaaagcctacatatatgtaattcatttatacatgctaataaaagggaaa  3119800        <----------DOF2                                                         *TSS <---------GLK1(2) ------>AHL20(2)    --------->AHL20(2)                                      ------------>CBF ---->ANAC58  --------->LBD16                                              --------->ANAC58 ---->ANAC58  ----------->GT1                     --------->MYB52(1)       --------->ANAC58 ------>GT1 <---------LBD16                  ------>MYB83                  --------->ANAC46  <------- --->DOF2 --------->MYB52(1)   --------->YAB1------>MYB46(1)        <------ZmHOX2a(1)<---------ARR11(3)   gtaattagagcttaaccggaaaataaacaaaaatcagaaataaaaccaaacaaaaccgagccaaaccagaggaatacactcaatacagattttaaaaacc  3119900                                                                                           --------->GLK1(2)                                                                                          <---------ARR11(3)                                                                                          <---------ARR14(2)                                                                                          <---------GLK1(2)                                                                                          --------->ARR11(3)                                                                                          --------->ARR14(2)                                                                                         <---------HSFB2a(1)                                                                                         --------->HSFB2a(1)                                                                                         --------->HSFC1(2)                                                                                         <---------HSFC1(2)                                             ------>NtERF2                              ----------->ARR10                                             --------->LBD16                        --------->ANAC58                                            --------->ANAC46                        --------->ANAC46                    --------->REM1(1)      <---------LBD16                          --------->ANAC55(2)               <<<<<<<<<NAM         <---------ANAC58       <---------ANAC58         <---------ANAC55(2)            <---------ICU4          <---------ANAC58 <----------DOF2                --------->ANAC55(1)           <---------YAB1    <----------DOF2--------->DEAR3(1)                      --------->ANAC58         --------->YAB1--------->ZAT6<----------DOF2 <---------DAG2                <---------LBD16 ----GT1 <---------ICU4<---------ALFIN1  <-----------GT1   <---------ANAC58      ----------->HVH21 <-   ctacttcttcatcatcatcccttcaacactcctttatagcttttctccgcctcaactttttgcttcttctctctcgatttgctctcacggaagattcttc  3120000              <-------TEIL             <------ZmHOX2a(2)            --------->ARR11(3)            --------->AGP1            <---------ARR11(3)            <---------ARR14(2)                                                             <---------            --------->ARR14(2)                                                             <---------WOX13(1)          ----------->ARR10                                                               <---------ANAC58        <--------P                                                                  --------->ZAT18      ----------->GT1                                                             <---------At4g35610  <---------ARR14(2)                                             --------->YAB1   --------->At4g35610  --------->ARR11(3)                                       <---------ICU4         --------->ZAT2  --------->ARR14(2)                                    --------->YAB1          <---------ZAT18  --------->GLK1(2)                            --------->At4g35610     <-----------HVH21  <---------ANAC58  <---------ARR11(3)                        <---------MYB52(1)  <---------YAB1 <---------ANAC58 <---------GLK1(1)                    <-----------GT1  <-------TEIL <---------ICU4<---------ZAT2 --------->RVE1(1)             <----------DOF2 <---------At4g35610--------->ARR11(3)<---------ZAT14 --------GLK1(2)            --------->GLK1(2) --------->MYB59 --------->YAB1   <---------ANAC58  <---   agaatatctggtaagatccatcgatcgaacaatctttttttctccagttagctcatattcatatttatgatcatgtcaattgcgagctcactgcttgatt  3120100                            --------->ANAC58                            --------->ANAC58                 ------>ZmHOX2a(2)                --------->CCA1(2)                --------->ARR14(1)               --------->ARR14(2)                   ----------->RAV1(2)                     <--------               <---------ARR11(3)                 <---------ANAC58                      --------->ETT(2)    <---------ANAC58      --------->At4g35610     <---------ANAC46                 >>>>>>>>>ARR1    <---------ANAC46 --------->GLK1(1)        <---------GLK1(1)                    >>>>>>>>>ARR2    <---------ANAC58 <---------GLK1(1)    <----------DOF2        <----------DOF2  --------->YAB1 <-----------GT1<------ZmHOX2a(2)     <---------ZAT18           <---------ANAC58  --------->ATHB12  < -DOF2         <---------ARR14(2)     --------->ZAT18           <---------ANAC58 <---------YAB1  <--- ------AHL20(2)--------->AGP1    <---------ALFIN1 <---------ANAC58 <---------AtMYB61<---------WOX13(1)   ttttttccttggaaccagatccgatatcagaagccccaagttcgcttgaattccgtctgagcaatggctttggtgagttctctatgattgtctactgtta  3120200                                                               --------->HSFB2a(2)                                                               <---------HSFB2a(2)                                                     <------ZmHOX2a(2)                                                    <-----------ARR10                         <------                                                    --------->ARR14(2)                       --------                  <---------YAB1  ----------->ARR10 <---------ARR11(3)                   --------->ATHB12        --------->ANAC55(2)     <---------MYB52(1)  <---------ARR14(2)               ------>MYB83 ------>ZmHOX2a(2)<---------AHL20(2)                --------->ARR11(3)            --------->ANAC46 -ZAT6  <---------ANAC55(2)    --------->TOE1(3)   <------ZmHOX2a(1)            --------->ANAC46 ------ZmHOX2a(2)--------->AHL20(2)    ----------->GT1------>ZmHOX2a(2) <---------MYB46(3)   <------- ------YAB1------->TEIL        --------->TOE2(3) <---------TOE2(3)   --------->ATHB12------>MYB46(1)<   cgatcgcatcatgtatcgatataattgtagaaacgttagatttgtaaattttaggatctaagtttatagaacgattgttcatacaccaaattgattaaaa  3120300                                                                   <---------YAB1                                                                   --------->ICU4                                                                 <---------At4g35610                                                                --------->ICU4                                                              <---------At4g35610                                                              --------->At4g35610                                                        --------->ATHB51                           <-    --------->MYB52(2)                             <---------ANAC55(2)                --------->ARR11(3)  <---------MYB52(1)        <---------ZAT6         <---------ANAC55(1)                <---------ARR14(2) ---YAB1          <---------At4g35610              --------->ANAC55(2)        --------->ATHB12  ----- ->AHL20(2)--------->ARR14(2)                      --------->ANAC55(1)       <---------YAB1     ----- --AHL20(2)<---------ARR14(2)           --------->ATHB12-------->ATHB1     <-----------GT1--------->AtLEC2 ---------YAB1   ------->TEIL      --------->ARR11(3)  <---------YAB1 <---------YAB1  <---------ARR11(3)   ttatgttagtttggatatgtagctactctattgttaagttattgatttggaatacgtattattgtgctgatgatgaattacgattgcaggtcttgcacac  3120400  Previous    Next  AGI:  At1g09630.1    Description:  ATRAB11C (ARABIDOPSIS RAB GTPASE HOMOLOG A2A); GTP binding. Identical to Ras-related protein Rab11C (RAB11C) [Arabidopsis Thaliana] (GB:O04486); similar to AtRABA2b (Arabidopsis Rab GTPase homolog A2b), GTP binding [Arabidopsis thaliana] (TAIR:AT1G07410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46870.1); similar to unknown [Populus trichocarpa] (GB:ABK94045.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro do Range:  from: 3118205    to: 3119710    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09640.1    Description:  elongation factor 1B-gamma, putative / eEF-1B gamma, putative. Identical to Probable elongation factor 1-gamma 1 [Arabidopsis Thaliana] (GB:O04487); similar to elongation factor 1B-gamma, putative / eEF-1B gamma, putative [Arabidopsis thaliana] (TAIR:AT1G57720.2); similar to elongation factor 1B-gamma, putative / eEF-1B gamma, putative [Arabidopsis thaliana] (TAIR:AT1G57720.1); similar to Os02g0220600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046318.1); similar to Os02g0220500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046317.1); similar to Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma 2) (GB:Q6YW46); contains Int Range:  from: 3119880    to: 3122528    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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