Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                   <-                                                                                                  ---                                                                                               ------                                                                                               ------                                                                                               <-----             ------->MYC3                                                                      ------             <-------MYC3                                                                      ------          <---------ALFIN1                                                                    <------        --------->AtMYB61                                         <---------At4g35610         <------        <---------ALFIN1                                      --------->ATHB12               --------        ----------->RAV1(1)                             --------->ANAC58                     --------       --------->ANAC58                                 --------->ANAC46                    ---------       --------->ANAC58                       --------->HSFB2a(1) --------->At4g35610       ---------       <------NtERF2                  ------>MYB83  ------>ZmHOX2a(1)                       <--------     --------->PCF2                   ------>MYB46(1)<---------REM1(2)          --------->TOE1(2) <--   --------->ANAC58                   --------->ANAC58  --------->ANAC58--------->LBD16     <--------   --------->ANAC58  --------->TOE2(3)--------->ANAC58<---------ALFIN1 <---------ANAC46   -----------   aaaacaggcaccacacatgtaaacatcaaaattcaaaaccaagcccaaatgttcctacacacaatgactgcttccgagtattcatacgaacacagatacg  3119300 ----->ZmHOX2a(2) -----ZmHOX2a(2) ------>ARR14(2) --->ANAC55(2) --->ANAC55(1) ----ANAC55(2) --->ANAC58              <----------DOF2 --->ANAC58         <---------At4g35610 -TEIL            --------->ARR14(2)                 ----------->RAV1(1) ---LBD16         <---------ARR14(2)              --------->ANAC46 ->ARR14(1)   <---------LBD16                     --------->ANAC58 ->CCA1(2)   --------->MYB52(1)                   --------->ANAC58 >ARR14(2) <---------ABI4(2)                   <------ZmHOX2a(2) >ARR11(1)--------->ANAC58                    --------->ARR14(2)                                <---- -GLK1(2)--------->DAG2<---------At4g35610    --------->ARR11(3)                                <---- -------ARR14(2)--------->LBD16               <---------ARR11(3)         <-----------GT1        ----- -ARR14(2)--------->ANAC58                    --------->AGP1<---------YAB1      --------->AHL20(2)  < >ARR10 ---------->DOF2--------->At4g35610    <---------ARR14(2)  --------->ZAT6<---------AHL20(2)  <   gatcgaatcgaaaagcaccggatgctgcttaacttagaactaaacctagatccagcaacatttcgattacactatatactatatatatagagagagatgt  3119400                                                                            ------->TEIL --------->ZAT18                                                            <---------ARR14(2) <---------ZAT18                                            --------->ARR14(2)                      - -----ANAC58                                                <---------ARR14(2)                      < -----ANAC58                         <---------ATHB12   --------->At4g35610 --------->GLK1(2)       < ---->ALFIN1                    ------>NtERF2    <---------GLK1(2)   <---------ANAC58               - ---------ANAC58         <---------ARR14(2)<---------ARR14(2)        <---------ANAC46               - ---------ANAC58         --------->ARR14(2)--------->ARR14(2)        <---------ANAC58 <------ZmHOX2a(1)   gtgcgtacttggagagtacgagtagcgaattcgacaccaatggtggatttggattctaagcagaactcgttgcgagtgaatctagagaggagattagact  3119500           --------->ATERF1(1)          <---------ATERF1(1)         <---------GLK1(2)       --------->LBD16     <---------LBD16    ------>NtERF2   <---------ALFIN1 ------>NtERF2 <---------ATERF1(1)                                            --------->ANAC58 <---------RAP2.6(3)                                            --------->ANAC58 -------->At1g77200                                             --------->ANAC46   <---------HSFB2a(2) ---------ETT(1)                                         <---------MYB52(1)        --------->HSFB2a(2) ---------ATERF1(2)         <----------DOF2           --------->SPL7          <----------DOF2       - -------->ANAC46   --------->YAB1                   <-----------HVH21         <---------DAG2  <------ ---------->HVH21 <------ZmHOX2a(2)                 <---------SPL7       <-----------GT1<------ZmHOX2a(1)   tgccgacaccggagtctccgatcaaaaccactttaaacaagtagtcgtattcttcgtccggtcttctcgccattgttacacttttctcgaggagtgcttt  3119600                                                    --------->AHL20(2)                                                    <---------AHL20(2)                                                   --------->AHL20(2)                                                   <---------AHL20(1)                                                   <---------AHL20(2)                                                --------->AHL20(1)                                                --------->AHL20(2)                                                <---------AHL20(2)                                            --------->AHL20(2)          <---------ARR14(2)                                           --------->AHL20(2)           <---------ARR11(3)                                           <---------AHL20(2)           <-----------ARR10                                        --------->AHL20(2)              --------->ARR11(3)                                       <---------AHL20(2)    <----------DOF2         <-----------GT1                            --------->At4g35610--------->AHL20(2)       --------->ARR14(2)          < -------->CCA1(2)  ---------->DOF2     --------->AHL20(2) <-----------GT1 ------>ZmHOX2a(2)     <---- ----DOF2      ------------------------>ANAC81 <---------AHL20(2)      <---------CCA1(2)        <----   agatttgggattttgaaatagaaaaggagaagatgacagaaataaataaataatttaatttctctttccccttggatcttctctattcaaccttctcggc  3119700                          <---------ANAC58                                                        ---                      <----------DOF2                                                           -----           --------->MYB46(3)                                                                   -----          *TSS       <---------DAG2                                             --------->AtLEC2-----         --------->MYB52(1)        --------->ALFIN1                  <---------AHL20(2) ---------->DOF2 ---------YAB1     <---------ARR11(3)                          --------->ANAC55(2)     <---------AHL20(2) -----ANAC58       --------->ARR11(3)                    ----------->TBP    <-----------GT1   ------- -----ANAC58------->GAMYB <---------ANAC58       ---------->DOF2 <---------AHL20(2)<---------------AGL15   ttgttattgcccaacgacgaagaccttttcttgtcaagttgggcttactaaaaaagcctacatatatgtaattcatttatacatgctaataaaagggaaa  3119800        <----------DOF2                                                         *TSS <---------ARR11(3) ------>AHL20(2)    --------->AHL20(2)                                      ------------>CBF ---->ANAC58  --------->LBD16                                              --------->ANAC46 ------>GT1   ----------->GT1                     --------->MYB52(1)       --------->ANAC58 ---->ANAC58<---------LBD16                  ------>MYB83                  --------->ANAC58  <------- --->DOF2 --------->MYB52(1)   --------->YAB1------>MYB46(1)        <------ZmHOX2a(1)<---------GLK1(2)   gtaattagagcttaaccggaaaataaacaaaaatcagaaataaaaccaaacaaaaccgagccaaaccagaggaatacactcaatacagattttaaaaacc  3119900                                                                                           --------->GLK1(2)                                                                                          --------->ARR11(3)                                                                                          --------->ARR14(2)                                                                                          <---------GLK1(2)                                                                                          <---------ARR14(2)                                                                                          <---------ARR11(3)                                                                                         <---------HSFC1(2)                                                                                         --------->HSFB2a(1)                                                                                         <---------HSFB2a(1)                                                                                         --------->HSFC1(2)                                             --------->LBD16                            ----------->ARR10                                             ------>NtERF2                          --------->ANAC55(1)                                            --------->DEAR3(1)                      --------->ANAC46                    --------->REM1(1)      <---------LBD16                          --------->ANAC55(2)               <<<<<<<<<NAM         <---------ANAC58       <---------ANAC58         <---------ANAC55(2)            <---------ICU4          <---------ANAC58 <---------DAG2                 --------->ANAC58           <---------YAB1    <----------DOF2--------->ANAC46                        --------->ANAC58         --------->YAB1<---------ALFIN1  <-----------GT1   <---------ANAC58        <---------LBD16 ----GT1 <---------ICU4--------->ZAT6<----------DOF2 <----------DOF2             ----------->HVH21 <-   ctacttcttcatcatcatcccttcaacactcctttatagcttttctccgcctcaactttttgcttcttctctctcgatttgctctcacggaagattcttc  3120000              <-------TEIL             <------ZmHOX2a(2)            --------->AGP1            <---------ARR11(3)            --------->ARR14(2)            <---------ARR14(2)                                                             <---------            --------->ARR11(3)                                                             <---------WOX13(1)          ----------->ARR10                                                               <---------ANAC58        <--------P                                                                  --------->ZAT18      ----------->GT1                                                             <---------ZAT2  --------->GLK1(2)                                              --------->YAB1   <---------At4g35610  --------->ARR11(3)                                       <---------ICU4         --------->At4g35610  --------->ARR14(2)                                    --------->YAB1          <---------ZAT18  <---------ARR11(3)                           --------->At4g35610     <-----------HVH21  <---------ANAC58  <---------ARR14(2)                        <---------MYB52(1)  <---------YAB1 <---------ANAC58 <---------GLK1(1)                    <-----------GT1  <-------TEIL <---------ICU4--------->ZAT2 --------->RVE1(1)             <----------DOF2 <---------At4g35610--------->ARR11(3)<---------ZAT14 --------GLK1(2)            --------->GLK1(2) --------->MYB59 --------->YAB1   <---------ANAC58  <---   agaatatctggtaagatccatcgatcgaacaatctttttttctccagttagctcatattcatatttatgatcatgtcaattgcgagctcactgcttgatt  3120100                            --------->ANAC58                            --------->ANAC58                 ------>ZmHOX2a(2)                --------->ARR14(1)                --------->CCA1(2)               --------->AGP1                       ----------->RAV1(2)                     <--------               <---------ARR11(3)                 <---------ANAC58                      --------->ETT(2)    <---------ANAC58      --------->At4g35610     <---------ANAC46                 >>>>>>>>>ARR2    <---------ANAC58 --------->GLK1(1)        <---------GLK1(1)                    >>>>>>>>>ARR1    <---------ANAC46 <---------GLK1(1)    <----------DOF2        <----------DOF2  --------->ATHB12 <-----------GT1<------ZmHOX2a(2)     <---------ZAT18           <---------ANAC58  --------->YAB1    < -DOF2         --------->ARR14(2)     --------->ZAT18           <---------ANAC58 <---------YAB1  <--- ------AHL20(2)<---------ARR14(2)<---------ALFIN1 <---------ANAC58 <---------AtMYB61<---------WOX13(1)   ttttttccttggaaccagatccgatatcagaagccccaagttcgcttgaattccgtctgagcaatggctttggtgagttctctatgattgtctactgtta  3120200  Previous    Next  AGI:  At1g09630.1    Description:  ATRAB11C (ARABIDOPSIS RAB GTPASE HOMOLOG A2A); GTP binding. Identical to Ras-related protein Rab11C (RAB11C) [Arabidopsis Thaliana] (GB:O04486); similar to AtRABA2b (Arabidopsis Rab GTPase homolog A2b), GTP binding [Arabidopsis thaliana] (TAIR:AT1G07410.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46870.1); similar to unknown [Populus trichocarpa] (GB:ABK94045.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro do Range:  from: 3118205    to: 3119710    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09640.1    Description:  elongation factor 1B-gamma, putative / eEF-1B gamma, putative. Identical to Probable elongation factor 1-gamma 1 [Arabidopsis Thaliana] (GB:O04487); similar to elongation factor 1B-gamma, putative / eEF-1B gamma, putative [Arabidopsis thaliana] (TAIR:AT1G57720.2); similar to elongation factor 1B-gamma, putative / eEF-1B gamma, putative [Arabidopsis thaliana] (TAIR:AT1G57720.1); similar to Os02g0220600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046318.1); similar to Os02g0220500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046317.1); similar to Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma 2) (GB:Q6YW46); contains Int Range:  from: 3119880    to: 3122528    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version