Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <------ZmHOX2a(2)              --------->ARR14(2)              --------->AGP1              <---------ARR14(2)        --------->ANAC46        --------->ANAC58        --------->ANAC58      ---------->DOF2               <----------DOF2                      ------->GAMYB <---------TOE2(3)   --------->ANAC46         ------>MYB83                              ----------->RAV1(1)    -------- --------->ANAC46           ------>MYB46(1)                     --------->YAB1     <----------DOF2  - -------->ANAC81  ---------->DOF2  --------->TOE2(3)           --------->ICU4<------ZmHOX2a(1)<------   aacacacatcaagccagatcgaaagagacctacaaaacctttatatcgcagaaaacaagagggtattgatgacaacagaggatagctttaagaaattaac  3100000                                                    --------->At4g35610                                                    <---------At4g35610                                                 <--------P--------->At4g35610          --------->AHL20(2)                                            --------->ZAT2 <---------At4g35610--------->ANAC58                                            --------->STY1(2)       --------->WOX13(1) <---------AHL20(1)                                            <---------At4g35610   <---------ATHB12     --------->AHL20(1)                                            <---------ZAT2 <---------ZAT2 --------->ANAC58 ->AHL20(2)                                 <---------STY1(2)   --------->GLK1(1)      <---------ARR11(3) --------->DOF2                         <---------STY1(2)  --------->ZAT2 --------->ANAC58   -------- -----GT1                               --------->STY1(2) ----------->RAV1(1) --------->ANAC58   ttcaaagttagaatcaatttcagtaagaagagtgagaccagtagctagctggtaagctcccagcagaaatcaatcgaagcaagcttcaatatatatagtt  3100100                                                                                                -----                                                                                               <-----                                              <----------DOF2                                 -------                                              <---------------AGL15                           -------                                        <------MYB46(1)                                       <------                                        <------MYB83                                          -------                                       --------------->AtSPL3                                 <------                                       <---------------AtSPL8                                 <------                                       --------->MYB46(2)                                     -------                                       --------->MYB59                                        <------                                       <---------------AtSPL3                                <-------           --------->DAG2              --------->MYB111(1)---------->DOF2                   ---------   ----------->GT1            --------->DAG2  --------------->AGL15                     --------->YAB1   <----------ID1<------ZmHOX2a(1)     --------------->AtSPL8                          --------->ICU4 ---------->DOF2----------->GT1   ---------->DOF2---------->DOF2    >>>>>>>>>TBF1 --------->ANAC58 --->GT1  ---------->DOF2    ---------->DOF2 --------->TOE2(3)   >>>>>>>>>TBF1    --------->ANAC58   aaaaaaagaaaaaaaaggaggaaactttgggaaaaggaaagtaggtacctttaaagagaagaaagaagaagaagaagtttcaagaagccatgatcagatc  3100200 ->ZmHOX2a(2) -ZmHOX2a(2) -->ARR11(3) -->ARR14(2) ---AGP1                <---------DAG2 -->AGP1                <----------DOF2                                                      <------- ---ARR11(3)       <---------At4g35610                                              ------>NtERF2 ---ARR14(2)   <-----------HVH21     <---------AHL20(2)     <------ZmHOX2a(2)      <---------ALFIN1 -->ARR14(3)  =====================bZIP_DOF    <---------ARR11(3)                  --------->ANAC58 ---ARR14(3)  --------->TGA1a     ----------->GT1       <------NtERF2              --------->REM1(1) --CCA1(2)    --------->O2       <---------YAB1--------->ARR11(3)  <---------DAG2  --------->ANAC58 -->ARR10 <---------ALFIN1    <---------YAB1  <---------CCA1(2) <---------ALFIN1   --------->ANAC46   ttgtgactagtcacactcgtcagaggctttttgttatagttaaattctaaatcttggcctcgatcaccaccttctctcttgtgctacgcctctctattat  3100300                                              --------->ANAC55(1)                                              <---------ANAC55(2)                                           --------->ARR14(2)                                           <---------ARR14(2)                                     -------->P                                     ------>MYB46(1)                                   --------->AtMYB61                                   <---------ALFIN1                                  --------->MYB46(3)                                <---------PCF2<---------ANAC55(1)                                <---------TCP16(1) --------->At4g35610            <---------PCF5--------->ANAC55(2)                                ---- <---------At4g35610------>NtERF2--------->TCP16(2)         <---------LBD16                      <--- <---------ZAT18   --------->DEAR3(1)------>MYB83          *TSS   --------->ALFIN1      <---------YAB1 --YAB1----------->HVH21 <---------YAB1 --------->LBD16 --------->O2                 <---------AHL20(2)   ttgtgctccctaacacagacgacgacgatgaatgggaccaccccgaatacgtatgcccatgtctcggagtatgggcgatttgtatattttataatggaat  3100400                                                                            --------->At5g28300                                                                            <---------MYB52(1)                                                                           --------->LBD16                                                                           ----------->GT1                                                                           <---------DEAR3(2)                                                                          --------->ATERF1(2)                                                                          <---------ATERF1(2)                                                                         <---------LBD16                                                                      --------->ATERF1(1)                                                                     <---------ATERF1(1)                                                                   --------->At4g35610                 --------->TOE2(3)                                 <------NtERF2             ---------->DOF2                                       <---------At4g35610        ----------->GT1         <----------ID1                    <---------DEAR3(2)   ---------->DOF2            ---------->DOF2                    <---------RAP2.6(2)  --------->AHL20(2)     ----------->GT1                         <---------DEAR3(1) ----->AHL20(2)  <-----------------AGL3                        <-----------HVH21                    < ------AHL20(2)  --------->TOE1(3)                             --------->ARR14(2)       ------>ZmHOX2a(1)   aaaataaaagaagaaaaaagcttaatttggataaaagacaaacttcacacacatatcaagaacagggtcggcttcgccggtaacattttcctcgctaaaa  3100500                                                                    <---------WOX13(1)                                                                  <---------AHL20(2)                                                                 <---------AHL20(2)               --------->ARR11(3)                                --------->AHL20(2)               <---------ARR11(3)                       <---------LBD16      <---------ZAT18                   <---------ARR11(3)     --------->YAB1     --------->ALFIN1                   --------->ARR11(3)   <---------KAN4(2)        ----------->HVH21 <---------ZAT14                       <---------CCA1(2)--------->LBD16             --------->O2 --------->ZAT14--------->CCA1(2)  ----------->GT1    <---------LBD16         <-----------GT1 <<<<<<<<<<<<<<<<LFY  --------------->AtSPL8       <----------DOF2--------->ATHB12  <---------O2   cagaacagtgggcttaagatatatcaagtactactacttgtaaatcttggcaactttctggggaatattaattgatattttcaccgatgtgactaagact  3100600                   ---------->DOF2                ----------->GT1                                                                  ----           ---------->DOF2                                                         ================HOX2a_HOX2a       <------ZmHOX2a(1)       <----------ID1                                      <------ZmHOX2a(1)      <----------ID1--------->DAG2                 <---------YAB1       --------->ARR14(2)       ----      ----------->GT1        >>>>>>>>>TBF1  <--------P                  <---------ARR14(2)     ------     <---------TOE2(3) --------->ALFIN1    <-------GAMYB                --------->GLK1(2)   <------ZmHOX2a(2)   --------->ICU4  <---------ZAT14        <---------ANAC46             <---------GLK1(2)   <---------ARR11(3)   gtgtaatgaggaaaaaagaagtaaagtggaagaagaacaaaatggggttgattcttataaatccgattgaagagaatcgtccaaaggataagagatcaaa  3100700                                                                      <-------GAMYB                         <---------AHL20(1)                          --------->MYB111(1)                         --------->AHL20(1)                          <---------MYB46(3)                         --------->AHL20(2)                          --------->MYB111(2)                         <---------AHL20(2)                          --------->MYB55(2)     <--------                      --------->YAB1                              <---------MYB46(3)        ---------                    <---------YAB1       ---------->DOF2         <---------AtMYB61         ----------                 <---------YAB1      <----------ID1           --------->ALFIN1             ---------- ------->GT1    <---------GLK1(2)   ------------------------>ANAC81  --------->MYB52(2)    ---------- -------------------->ANAC81  --------->AHL20(2)         ---------->DOF2    <---------AHL20(2) ---->DOF2  ---------->DOF2  --------->AHL20(2)      ---------->DOF2<--------P<---------TOE2(3)   agtaaaaaaaaaaaaaaagattattaataaaataaaaaaacgagaaagagagagagaaagaaagatggtggtagttgtttaatgaaggcagtaaccagaa  3100800        <------MYB83                                              <---------ANAC58        <---------ANAC46                                          <---------ANAC58        <------MYB46(1)                                           <---------ANAC46       --------->MYB59                                           ---------->ID1                  ---- -------AGL15                                                   <-----------GT1            <--------- ------>AGL15                --------->YAB1                 <---------DAG2          <---------HSFB2a(2) ------->AGL1         <----------ID1                   <---------LBD16              --------->HSFB2a(2) ------->AGL2    <------ZmHOX2a(1)          <----------DOF2 <----------DOF2        <---------ANAC46 ------->AGL3  <---------TOE2(3)  <---------ZAT6--------->ANAC55(2)                <---------LBD16   gtagaaagttgggttttgaggaagacgacaacgatagtcttatgggcttcacgttttctcggctttttgcgttttgtaatctgtttctgggatttacttc  3100900  Previous    Next  AGI:  At1g09570.1    Description:  PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ signal transducer. Identical to Phytochrome A (PHYA) [Arabidopsis Thaliana] (GB:P14712); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYC (PHYTOCHROME DEFECTIVE C) [Arabidopsis thaliana] (TAIR:AT5G35840.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to phytochrome A [Armoracia rusticana] (GB:BAA99408.1); similar to phytochrome A [Armoracia rusticana] (GB:BAA99410.1); similar to phytochrome A [Arm Range:  from: 3095258    to: 3100359    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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