Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->MYB52(1)                               --------->ANAC58                             ------>NtERF2                            --------->DEAR3(1)                            ----------->HVH21                            <---------DEAR3(1)                           ------>NtERF2                           --------->RAP2.3(1)                           <------NtERF2                           --------->ATERF1(1)                          --------->LBD16                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <---------ATERF1(1)                          ------>NtERF2                          <---------RAP2.3(1)                         <xxxxxxxxxxxxxxxxsmallRNA(i)                        <---------LBD16                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     ----------->RAV1(2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    --------->MYB52(1)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    -------->P --------->ANAC58                    <xxxxxxxxxxxxxxxxsmallRNA(i)                   ------->GAMYB  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxsmallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <---------MYB111(1)                  --------->MYB46(3)                  <---------MYB52(2)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           --------->ZAT2<---------DEAR3(1)           <---------ZAT2xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------At4g35610<------NtERF2           --------->At4g35610<---------------------WRI1         <-----------RAV1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxsmallRNA(i)        <xxxxxxxxxxxxxxxxsmallRNA(i)        --------->LBD16 <xxxxxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------AHL20(2) ---------->DOF2   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->MYB52(1)            <---------AHL20(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->DEAR3(2)      --------->ICU4 ---------ANAC46  <---------MYB46(2)<---------MYB52(2)         --------->AHL20(2) ---->At4g35610   <---------MYB111(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         ------->TEIL -----At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->YAB1       <---------ATHB12 ------>RAV1(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->AHL20(2)<----------ID1            --   ctgcgtctaccgcagctgcaactacctgcggcgacgaaacgaacagactaaatataaataaacataaaaattaaaagcacaaatgaattttagtatgtgt  3063700                                                                                            <--------                                                                                            xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                 --------->ARR11(3)                                                                               <---------YAB1               --------->ICU4                                                  <---------ATHB12            --------->ICU4              <----------DOF2                     --------->TOE1(2)          ----------->GT1           <-----------GT1               <---------TOE2(3)     <---------ANAC58  <---------YAB1<-----------GT1  *TSS  --------->TOE2(3)          <---------TOE1(3)   <xxxxxxxxxxxxxx  <---------ANAC55(2)     <---------ATHB12                       ---------->DOF2--------->YAB1    <xx  <---------ANAC46      --------->WOX13(1)                   <---------ZAT6 --------->TOE2(2) <------ZmHOX2a(1) ------->ICU4<---------ICU4--------->YAB1             --------->GLK1(1)  <-----------GT1<---------ANAC58   aattatgtatagtagtaattactcatcaatcatcttaaaaacctttttttctggtgatttctagttttaaagtttttacctatgattttgtcttgaggat  3063800               <------------CBF             <---------AHL20(2)             --------->AHL20(2)             <---------ARR11(3)                                       <---------YAB1             --------->ARR11(3)                                     <---------AHL20(2)             <---------AHL20(1)                                     --------->AHL20(2)             --------->AHL20(1)                                    --------->ICU4          --------------->AGL15            ------------------------>ANAC81 --------------->AtSPL8        ------------>CBF                   --------->ARR11(3)      <---------YAB1     <----------DOF2  --------->ICU4       <---------ARR11(3)    <---------ICU4 -TOE2(3) <---------------AGL15         <---------AHL20(2)      <---------AHL20(2) xxxxxxxxxxxxx>smallRNA(si3)      --------->AHL20(2)            <---------ATHB51 xxxxxxxxxxxxx>smallRNA(l2)       <---------AHL20(2)            --------->AHL20(2) xxxx>smallRNA(i2)    --------->AHL20(2)--------->AHL20(2)      --------->ICU4 xxxxxxxxxsmallRNA(le3)   <---------AHL20(2)                --------->AHL20(2)                     <- xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->AHL20(2)   ---------->DOF2  --------->GLK1(2)       <---   gtctaggctttacaatatattgaaatatttatacatttaaaataaaatctataaaactgaaagaaaataattaatattctgaacttcattttttgcattt  3063900                                                             <---------ANAC58                                                             <---------ANAC58                                                          --------->ALFIN1                                                         ------->MYC3                                                         <-------MYC3                                                         ------->MYC4                                                         <-------MYC4                                                         <-------PIF5                                                         ------->PIF5                                <---------ANAC55(2)      ------->MYC2                                <---------ANAC46        <---------TGA1a                                --------->O2            --------->TGA1a                     <---------ICU4                     <---------O2                    --------->AHL20(1)                  <---------ANAC55(2)                    <---------AHL20(2)                  --------->O2        --------->AHL20(2)      <---------O2   --------->ICU4<---------ANAC46        <---------AHL20(2)      --------->ANAC55(2) <-----------GT1             <---------ANAC55(2)    --------->AHL20(2)   <---------At5g28300   --------->AHL20(2)         <---------YAB1 --------ANAC46     --------->AHL20(2)         <---------AHL20(2)  <---------AHL20(2)        ------->TEIL ------ANAC46      --------->AHL20(2)  <---------MYB46(3)<-------MYC2 <---------YAB1 ------->TEIL   tgtgtataaattaaaaaaaaaaaaaattactgctacgtgatttgttgaaaaaattaacacgtggggtgttttatttttgattacatgaacttgtgaacct  3064000                                                          ------>NtERF2                                                         --------->DEAR3(1)     ------>MYB83                                                        --------->ATERF1(1)     ------>MYB46(1)                                                       --------->At4g35610    <---------MYB111(2)                                                       <---------At4g35610    <---------MYB46(2)    <                                                   <---------WOX13(1)         <---------MYB111(1) <--                                                  <------------CBF        --------->MYB46(3)     ----                                                 --------->ATHB12       ------>MYB83             ----                                                <---------YAB1          ------>MYB46(1)          ----                                             --------->GLK1(2)          --------->ANAC46         ====                                            <---------GLK1(2)         <---------MYB59            ----    --------->At4g35610                     <---------ARR14(2)        <---------MYB46(2) --------->ZAT6    <---------At4g35610                     --------->ARR14(2)     <-----------GT1   <---------ATHB12   tgtttctgcttacaaaaactgaagagcccatttcaaacaaggcccatattctgattgagcggccctattttaccaaaccacctactaatgaacactctca  3064100                                    --------->YAB1                                    --------->ATHB51                                    <---------ICU4                                    --------->AHL20(2)                                    <---------AHL20(2)                                    -------->ATHB1                             --------->LBD16  <---------At4g35610               <--------HAHB4                            <---------ANAC46    ---  --------->bZIP60(2)              <---------ATHB51                          <---------LBD16     <--- -----------GT1           *TSS     --------->ICU4                    --------->CCA1(2)           <--- ---------HVH21          <----------DOF2                            <---------ARR14(2)       <------- ----->ANAC58      --------->HSFC1(2)                               --------->ARR14(2)   --------->ALFIN1 ----->TGA1a       <---------HSFC1(2)                               <---------ARR11(3)--------->DAG2< ----->ANAC46      <---------HSFB2a(1)                              --------->ARR11(3)<---------AtMYB61 ===================================bZIP_DOF                     <------ZmHOX2a(1)  ---------->DOF2<- ----->ANAC58      --------->HSFB2a(1)                        <-----------RAV1(2)  <------ZmHOX2a(1)-   agtcacctcattcgagttggaagttccctttaaaacaattattttcagacacagagagactcagacaggagatatgaactgcggaggaaaggtggtctgc  3064200          <---------LBD16         --------->MYB52(1)      <---------ZAT2      <---------HSFB2a(1)      --------->At4g35610      --------->ZAT2      --------->HSFB2a(1)      <---------At4g35610      --------->HSFC1(2)      <---------HSFC1(2)     <-----------ARR10     --------->ARR14(2)     <---------ARR14(2)                                        <-----------HVH21   --------->LBD16                                            --------->DEAR3(1)           <---------MYB46(3) <---------LBD16                                           <---------ALFIN1        <------ZmHOX2a(2) ------>DOF5.7(2)                                          --------->REM1(1)       --------->CCA1(2) -------DOF2------>NtERF2                           --------->LBD16               <---------ARR14(2) --------HVH21           <---------ANAC46          <---------ANAC58               <---------ARR11(3) --DEAR3(1) --------->LBD16                        <---------ANAC58               --------->AGP1 ---------DOF5.7(2)   <---------ANAC46           ------>ZmHOX2a(1)             --------->HSFB2a(2) --------ARR14(2)     <---------ANAC58          <---------ALFIN1 <---------WRKY12 --------->ARR14(2) -------->MYB52(1)    <---------ANAC58  <----------DOF2   <---------ZAT14      <---------HSFB2a(2)   gttaccggagcttccggctacatagcgtcttggattgtcaagcttttgctcctccgtggctacaccgtcaatgccactgttcgagatccaagtttgttcc  3064300                                            <---------YAB1                                          --------->YAB1                                          <---------ICU4                                          --------->ATHB12                                          --------->ATHB51                                          -------->ATHB1                                          <--------HAHB4                                         <---------YAB1                                         <---------ATHB51                                          <-                                         --------->ICU4                               --------->GLK1(2)                              --------->MYB52(1)                                      --------->ARR14(2)                            <---------MYB52(2)         --------->YAB1                 <---------ARR14(2)                    <---------AHL20(2)   <---------ATHB12<---------YAB1              <---------GLK1(2)              <----------DOF2--------->TOE1(2)        --------->ICU4        --------->YAB1         --   caactctctctctcttctttattttaaaaaacaaacgactgcaattattagggacgattatgagtagcacaaatagaatcaaaatcggaatctggctgaa  3064400                    --------->YAB1                    <---------ICU4                                                            >>>>>>>     --------->ANAC58                                                                         >>>>>>>     --------->ANAC55(2)                   --------->YAB1                             ------>MYB83     --------->ANAC58            --------->AHL20(2)                                   ------>MYB46(1)   --------->MYB52(1)     <----------DOF2  --------->ANAC55(2)                      <---------MYB59  ----------->HVH21<---------ATHB51        --------->ANAC46                         ------->GAMYB --------ARR11(3)  <---------ATHB12       <-------TEIL        <----------DOF2     --------->ANAC58 ------->GLK1(2) --------->WOX13(1)  --------->AHL20(2) <---------ATHB12          --------->ANAC58   aaatctgacggaatcaaaccaattatgtctttacttaaattacatacataacatccaaatcgttcttttttttttttttgagacaaccaaattgaaattt  3064500                                                                                      ---------->DOF2                                                                                   --------->ANAC58                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                                   --------->ANAC55(1)                                                                                   --------->ANAC55(2)                                                                                  <---------LBD16                                                                                  <------------------                                                                                --------->ARR14(2)                                                                               ------>MYB83                                                                             <---------------AGL15                                                                             <---------MYB59                                                                            <-----------------AGL1                                                                            ----------------->AGL1                                                                            ----------------->AGL2                                                                            ----------------->AG                                                                            <-----------------AGL2                                                                            <-----------------AG                           <---------ICU4                                   <-----------------AGL3                           --------->YAB1                         --------->YAB1<---------ARR14(2)                          --------->ICU4                         <---------YAB1------>MYB46(1)               <---------ANAC46                                  <---------AHL20(2)<---------ANAC55(2)              <---------MYB52(1)                      <-----------GT1 <---------AHL20(2)            <---------MYB46(3)                       <-----------GT1  --------->AHL20(1)            <-----------RAV1(1)                  <---------AHL20(1)   --------->AHL20(2)     --------->ATHB12    <---------WOX13(1)      <---------ARR11(3)  <---------AHL20(2)    <---------YAB1    <---------YAB1             --------->AHL20(1)  --------->AHL20(2)  <----------DOF2<---------ANAC46     <---------AHL20(2)       --------->YAB1--------------->AGL15 >>CBP60g <---------At4g35610        --------->AHL20(2)      <----------DOF2----------------->AGL3 >>SARD1  --------->At4g35610        <---------AHL20(2) <---------ETT(1)  <-----------GT1       -----   gggactttgattagctgttgtgttttgaatgatgacttattaattagacaatatttttccgacctttataattaaattaccaaatacggaaagttcagag  3064600  Previous    Next  AGI:  At1g09486.1    Description:  pseudogene, 60S ribosomal protein L21 (RPL21B), temporary automated functional assignment; blastp match of 67% identity and 2.0e-52 P-value to GP|3885884|gb|AAC78102.1||AF093630 60S ribosomal protein L21 {Oryza sativa} Range:  from: 3062432    to: 3063733    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09490.1    Description:  cinnamyl-alcohol dehydrogenase family / CAD family. similar to cinnamyl-alcohol dehydrogenase family / CAD family [Arabidopsis thaliana] (TAIR:AT1G09480.1); similar to unknown [Populus trichocarpa] (GB:ABK95157.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 3064126    to: 3065939    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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