Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ATHB12                         --------->ANAC58                                          <---------At4g35610                 --------->ARR14(2)                                                --------->At4g35610                 --------->GLK1(2)                                               <-----------GT1                 <---------ARR14(2)                                    --------->ZAT2    <---------ICU4         --------->WOX13(1)                                            <---------ZAT2   --------->ICU4     ----------->GT1     --------->ANAC58                              --------->At4g35610        <--  <-------TEIL  <---------GLK1(2)                                      <---------At4g35610 <---------YAB1 --------->CCA1(2)     --------->GLK1(1)                            <---------At4g35610 <---------YAB1 ->MYB46(3)<---------ATHB12                                      <------ZmHOX2a(1) ----------->RAV1(2)   tagatacaggttaatcaagaatctgatatgcaatcgaactcagaaattaagtcagaacaaaatgagaggaagcagctgaaaattcacctgattattaggg  3014900                                                                  --------->ANAC58                                                                  --------->ANAC58                         --------->WOX13(1)                    <---------ARR14(2)    <---------HSFB2a(2)                       <------ZmHOX2a(2)                       --------->ARR14(2)    <---------ANAC46                     <------ZmHOX2a(1)                     <---------At4g35610    <---------MYB52(1)                 ---------->DOF2   ---------->DOF2         --------->At4g35610   <-------GAMYB   ----            --------->GLK1(2) --------->LBD16   <---------At4g35610           <-----------------AGL1          --------->HSFC1(2)  --------->HSFB2a(2)  --------->At4g35610        <-----------------AG -- -----TEIL--------->HSFB2a(1) <---------HSFB2a(2)  <---------At4g35610 <---------ALFIN1          <---   tccatctttcgaagaatccaaaaggatcaatccgagaaaaagaagaagtaatctgctgatcagcagaaacgaaacaccttctccgttgtggaaagtatcg  3015000                                                                    --------->O2                                                                    <---------ANAC55(2)                                                                    --------->ANAC55(2)                                                                    <---------O2                                                                    <---------ANAC46                                                                <---------At4g35610                                                       <---------ANAC46                                         ------>ZmHOX2a(2)      --------->At4g35610                                        <------ZmHOX2a(2)   --------->ARR14(2)                                       <---------ARR11(3)   <---------ARR14(2)                                       --------->AGP1  <---------ANAC58                                       --------->ARR11(3) <-------MYC3                                       --------->ARR14(3) ------->MYC3                          <----                  --------->LBD16      <---------ARR14(3) <-------MYC2                       *TSS                 --------->LBD16       <---------GLK1(2)  ------->MYC2                 --------->YAB1 ----->ARR11(3) --------->HSFB2a(2)    <---------ARR14(2)<---------ANAC58             <---------YAB1 ---->ZmHOX2a(2)<---------HSFB2a(2)    --------->ARR14(2)<---------ANAC58       <---------------AGL15 ------ARR11(3)<---------LBD16        <---------CCA1(2)<---------ANAC58  --------->GLK1(1)<---------ICU4   atcttccctctgaattttcccgagaaaaaatttctgtatcagatcttcaaaactcttgcgcgtgtctgctacgtgatttcttctatttttgataatttct  3015100                                                          ---------->DOF2   --------->AHL20(2)                                                         --------->AHL20(2) --------->ATHB51                                                         <---------AHL20(2) -------->ATHB1        <--                                                     --------->ICU4        <---------ATHB51     <----                                                   --------->AHL20(2)      --------->ICU4      ------                                                   --------->YAB1          <---------ATHB12  <-------                                                  <---------ATHB51      ------------>ATHB5-----------                       ------->GAMYB              <---------ATHB12     ------------>CBF   --------->YAB1 ------DOF2 <---------AHL20(2)                ------------>CBF     --------->MYB59   --------->AHL20(2)   ttcaaatgtgttttttaattctcaacgagcccgataactcttctctggcccaataatatttaaagaagttaggcccaattattcaaaaaaaatggtaatt  3015200                                                                                    ------------>CBF    <-----------GT1                                      ---------->DOF2          --------->ANAC58 -------YAB1                                        --------->ANAC58              --------->ANAC58 -------GT1                                         --------->ANAC58   ---------->DOF2       -------- --->ICU4                      <---------ICU4  --------->ANAC46      <---------TOE2(3)      --------- --ICU4                     --------->YAB1--------->ARR14(2)    <---------ZAT6   --------->SPL7     - >GT1                      <------ZmHOX2a(2) --------->ANAC46   ----------->GT1 <------ZmHOX2a(1)   <   acgatttcaccacaaaaacttgtgtttcgatcaaaattatccactatccacaacaaggcaaaagaagagttaagaaagaagaggacgacaatggctgtaa  3015300                                                                                                    -                                                                                                -----                                                                                                -----                                                                                                -----                                                                         --------->ANAC58       <----                                                                     ------>ZmHOX2a(2)         <-----                                                                  -------->HAHB4           --------->PCF2                                                                  --------->ATHB12         <---------TCP15(1)                <---------ANAC46                                 <---------YAB1            --------->PCF5  ----------->HVH21           *TSS                               --------->ICU4       <---------bZIP60(2) ->At5g28300    <---------ANAC58                                <---------TOE2(3)    <--------------- -->GT1         <---------ANAC58                               --------->YAB1      ----------->TGA1-- -------->ANAC55(2)          <---------YAB1                <----------DOF2         ----------->HVH21< ---------ANAC55(2)          --------->ICU4         --------->AHL20(2)   --------->ANAC58 <----------   atatgtgaccatgaaatggcgagaggctgagataattgtcttatcccttcaaaatttaagacttttaatgatcggaaggaacaagatgacgaggtcccac  3015400    --------->AtMYB61                                                <---------ATHB12 -------->MYB46(3)                                                   --------->MYB46(3) ---->ANAC46                                                        -------->P ---->ANAC58                                                       --------->WOX13(1) ---->ANAC58                               <---------MYB46(3)    --------->MYB46(3) -----MYB52(2)                             <-----------RAV1(1)   <---------ATHB12 ----TOE1(2)                             <---------At4g35610    ------>MYB83                    ----- --------TaNAC69(2)                      <-------GAMYB         --------->WOX13(1)      <---------REM1(1) ----->TEIL                     <----------DOF2              --------->MYB46(3)        <-----------RAV1(1) ---------MYB55(2)           <---------ARR11(3)            <-----------GT1 <---------ANAC46  -------- -HVH21   <---------ALFIN1   --------->ARR11(3) <---------ANAC46------>MYB46(1)     <---------YAB1  -   gaaccaccatacacacttcaatttcaaataagagcttttcttcagttgttgctcagagacttaaccaatcaaccatggcgaagatgatgatgttgcaaca  3015500                                                                                       <---------TOE1(2) -->GAMYB<----------DOF2                              --------->At4g35610             ------>ZmHOX2a(1) --->RAV1(1)                                          <---------At4g35610   <----------DOF2 -------->At4g35610 ------>ZmHOX2a(1)             <----------CDC5        <---------ARR11(3)  --------   gcatcagccttctttctctctccttacttcttctctgtctgacttcaatggcgctaagctccatttacaagtccaggtctttttcatccttcgttctgac  3015600              <---------AHL20(2)        <---------YAB1               <---------ANAC58     <---------YAB1                  <---------ANAC58        --------->SPL7     --------->ICU4                  <---------ANAC46       <---------MYB52(1)   <--------HAHB4                  <---------ANAC46    <---------ARR14(2)   <---------ICU4         --------->ARR14(2)           --------->ARR14(2)   --------->YAB1         <---------ARR14(2)--------->At4g35610 --------->At4g35610                 <  <---------YAB1    --------->At4g35610     <---------At4g35610 <---------At4g35610     <---------AHL20(2) --->HVH21   --------->AHL20(2) <----------DOF2        --------->GLK1(2)            <----------DOF2 <   gactatcattatcaattttatcagatgggttctgcttttgtgtgtctgatgagccaaaatccgttcagcacatttcaaaactattccttttaaaatgggt  3015700                                                                                        --------->At4g35610                                                       <---------ANAC58                 <---------ZAT2                                                       <---------ANAC58                 --------->ZAT2                                                    ------->TEIL                        <---------At4g35610                                            --------->YAB1    ---------->DOF2  <---------ANAC58                                     <---------ANAC46  --------->ALFIN1        <---------ANAC58        <---------MYB46(3)      --------->ATHB12 <---------YAB1              <---------ARR14(2) ---------TOE2(3)              <------ZmHOX2a(2)<---------TOE2(3)          <---------MYB46(3) ---------TOE1(3)              <---------YAB1<---------AHL20(2)           --------->ALFIN1   ttaagcttgtttgttcgacttcttgagctatggatcattgtgtctatattaatgaatgtgtgtctaaagtcttagtgtggttcttgtttcagctctgatt  3015800  Previous    Next  AGI:  At1g09330.1    Description:  Identical to Uncharacterized FAM18-like protein At1g09330 [Arabidopsis Thaliana] (GB:Q8LEK2;GB:Q9ZPZ2); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96699.1); contains InterPro domain Protein of unknown function DUF846, eukaryotic; (InterPro:IPR008564) Range:  from: 3012764    to: 3015093    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09340.1    Description:  CRB; binding / catalytic/ coenzyme binding. Identical to Uncharacterized protein At1g09340, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SA52;GB:O49260;GB:Q8LAU2;GB:Q8W4G5;GB:Q9T0N9); similar to mRNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G63140.1); similar to unknown [Populus trichocarpa] (GB:ABK95651.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73432.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96584.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 3015330    to: 3018236    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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