Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   ------>NtERF2                                                                     <---------YAB1<---------ALFIN1                                                                  --------->ICU4 ----------->RAV1(1)                                    <---------ICU4              ---------->DOF2 --------->DEAR3(1)                                 --------->YAB1             <-------TEIL      ------>NtERF2                                 <-----------GT1     ---------->DOF2<---------GLK1(2)                           ----------->GT1        <---------------AGL15      --------->ANAC46   ----------->ARR10  <-----------GT1    <---------YAB1 <---------------AtSPL8--------->LBD16     --- >DAG2     <---------REM1(1)  --------->YAB1      --------------->AGL15     <---------LBD16       --- >DOF2   --------->At4g35610 <---------YAB1      ----------------->AGL1 <---------YAB1    ------>ZmHOX2a(1)   ttggtaagattagctgtagcaattttacattgtaataaccattacgatgctacccaaaagagtacataaagattattatccgccaacacatcctctaacc  3014700                                                                     ----------->HVH21                                                                    ------>ZmHOX2a(2)                                                                   --------->CCA1(2)                                                                   <------ZmHOX2a(2)                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                         --------->ATHB51                         <---------ARR11(3)       <---------AHL20(2)<---------ICU4                           --------->ARR11(3)   --------->ICU4    <-------TEIL      --------->MYB52(1)         <---------AGP1             -------- --->MYB83   <---------At4g35610    <---------GLK1(2)             --------->AGP1 --------->ARR11(3) --->MYB46(1)--------->At4g35610<---------LBD16 --------->AtMYB61<---------CCA1(2)  --------->HSFB2a(2)   tagcaatgtttatttagctcaaatgcataatttctacggattatcggagaccaaaacgtcgaaacacagatctgacacaataacatctagatcgaacaac  3014800                                                                                         --------->ATHB12                         --------->ANAC58                                          <---------At4g35610                 <---------ARR14(2)                                                ----------->RAV1(2)                 --------->GLK1(2)                                               <-----------GT1                 --------->ARR14(2)                                    --------->At4g35610        <--         --------->WOX13(1)                                            <---------At4g35610 <---------YAB1     ----------->GT1     --------->ANAC58                              <---------ZAT2    <---------ICU4  <-------TEIL  <---------GLK1(2)                                      --------->ZAT2   <---------YAB1 --------->CCA1(2)     --------->GLK1(1)                            <---------At4g35610 --------->ICU4 ->MYB46(3)<---------ATHB12                                      <------ZmHOX2a(1) --------->At4g35610   tagatacaggttaatcaagaatctgatatgcaatcgaactcagaaattaagtcagaacaaaatgagaggaagcagctgaaaattcacctgattattaggg  3014900                                                                  --------->ANAC58                                                                  --------->ANAC58                         --------->WOX13(1)                    --------->ARR14(2)    <---------ANAC46                       <------ZmHOX2a(2)                       <---------ARR14(2)    <---------HSFB2a(2)                     <------ZmHOX2a(1)                     --------->At4g35610    <---------MYB52(1)                 ---------->DOF2   ---------->DOF2         <---------At4g35610   <-------GAMYB   <---            --------->GLK1(2) <---------HSFB2a(2)  <---------At4g35610        <-----------------AGL1          --------->HSFB2a(1) --------->LBD16   <---------At4g35610           <-----------------AG -- -----TEIL--------->HSFC1(2)  --------->HSFB2a(2)  --------->At4g35610 <---------ALFIN1          ----   tccatctttcgaagaatccaaaaggatcaatccgagaaaaagaagaagtaatctgctgatcagcagaaacgaaacaccttctccgttgtggaaagtatcg  3015000                                                                    --------->O2                                                                    --------->ANAC55(2)                                                                    <---------O2                                                                    <---------ANAC55(2)                                                                    <---------ANAC46                                                                <---------At4g35610                                                       <---------ANAC58                                         ------>ZmHOX2a(2)      --------->At4g35610                                        <------ZmHOX2a(2)   <---------ARR14(2)                                       <---------ARR14(3)   --------->ARR14(2)                                       --------->ARR11(3) ------->MYC2                                       <---------GLK1(2)  <-------MYC2                                       --------->AGP1  <---------ANAC46                         <----                  --------->LBD16      --------->ARR14(3) ------->MYC3                       *TSS                 --------->LBD16       <---------ARR14(2) <-------MYC3                 --------->YAB1 ------ARR11(3) <---------HSFB2a(2)    <---------ARR11(3)<---------ANAC58             <---------YAB1 ---->ZmHOX2a(2)--------->HSFB2a(2)    --------->ARR14(2)<---------ANAC58       <---------------AGL15 ----->ARR11(3)<---------LBD16        <---------CCA1(2)<---------ANAC58  --------->GLK1(1)<---------ICU4   atcttccctctgaattttcccgagaaaaaatttctgtatcagatcttcaaaactcttgcgcgtgtctgctacgtgatttcttctatttttgataatttct  3015100                                                          ---------->DOF2   --------->AHL20(2)                                                         --------->AHL20(2) --------->ATHB51                                                         <---------AHL20(2) -------->ATHB1        <--                                                     --------->ICU4        <---------ATHB12     <----                                                   --------->YAB1          <---------ATHB51    ------                                                   --------->AHL20(2)      --------->ICU4    <-------                                                  <---------ATHB51      ------------>ATHB5--------->YAB1                       ------->GAMYB              <---------ATHB12     ------------>CBF   ----------- ------DOF2 <---------AHL20(2)                ------------>CBF     --------->MYB59   --------->AHL20(2)   ttcaaatgtgttttttaattctcaacgagcccgataactcttctctggcccaataatatttaaagaagttaggcccaattattcaaaaaaaatggtaatt  3015200                                                                                    ------------>CBF    <-----------GT1                                      ---------->DOF2          --------->ANAC58 -------YAB1                                        --------->ANAC58              --------->ANAC58 -------GT1                                         --------->ANAC58   ---------->DOF2       -------- --->ICU4                      <---------ICU4  --------->ANAC46      <---------TOE2(3)      --------- --ICU4                     --------->YAB1--------->ARR14(2)    <---------ZAT6   --------->SPL7     < >GT1                      <------ZmHOX2a(2) --------->ANAC46   ----------->GT1 <------ZmHOX2a(1)   -   acgatttcaccacaaaaacttgtgtttcgatcaaaattatccactatccacaacaaggcaaaagaagagttaagaaagaagaggacgacaatggctgtaa  3015300                                                                                                    <                                                                                                -----                                                                                                -----                                                                                                -----                                                                         --------->ANAC58       <----                                                                     ------>ZmHOX2a(2)         <-----                                                                  -------->HAHB4           <---------TCP15(1)                                                                  --------->ATHB12         --------->PCF5                <---------ANAC58                                 <---------YAB1            --------->PCF2  ----------->HVH21           *TSS                               --------->ICU4       <---------bZIP60(2) ->At5g28300    <---------ANAC46                                <---------TOE2(3)    <--------------- -->GT1         <---------ANAC58                               --------->YAB1      ----------->HVH21- ---------ANAC55(2)          <---------YAB1                <----------DOF2         ----------->TGA1-- -------->ANAC55(2)          --------->ICU4         --------->AHL20(2)   --------->ANAC58 <----------   atatgtgaccatgaaatggcgagaggctgagataattgtcttatcccttcaaaatttaagacttttaatgatcggaaggaacaagatgacgaggtcccac  3015400    --------->AtMYB61                                                --------->MYB46(3) ---------MYB55(2)                                                   <---------ATHB12 ---->ANAC58                                                        -------->P ---->ANAC58                                                       --------->WOX13(1) ---->ANAC46                               <-----------RAV1(1)   <---------ATHB12 -----MYB52(2)                             <---------MYB46(3)    --------->MYB46(3) ----TOE1(2)                             <---------At4g35610    ------>MYB83                    ----- --------TaNAC69(2)                      <-------GAMYB         --------->WOX13(1)      <-----------RAV1(1) -------->MYB46(3)              <----------DOF2              --------->MYB46(3)        <---------REM1(1) ----->TEIL                  --------->ARR11(3)            <-----------GT1 <---------ANAC46  -------- -HVH21   <---------ALFIN1   <---------ARR11(3) <---------ANAC46------>MYB46(1)     <---------YAB1  -   gaaccaccatacacacttcaatttcaaataagagcttttcttcagttgttgctcagagacttaaccaatcaaccatggcgaagatgatgatgttgcaaca  3015500                                                                                       <---------TOE1(2) -->GAMYB<----------DOF2                              <---------At4g35610             ------>ZmHOX2a(1) --->RAV1(1)                                          --------->At4g35610   <----------DOF2 -------->At4g35610 ------>ZmHOX2a(1)             <----------CDC5        <---------ARR11(3)  --------   gcatcagccttctttctctctccttacttcttctctgtctgacttcaatggcgctaagctccatttacaagtccaggtctttttcatccttcgttctgac  3015600  Previous    Next  AGI:  At1g09330.1    Description:  Identical to Uncharacterized FAM18-like protein At1g09330 [Arabidopsis Thaliana] (GB:Q8LEK2;GB:Q9ZPZ2); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96699.1); contains InterPro domain Protein of unknown function DUF846, eukaryotic; (InterPro:IPR008564) Range:  from: 3012764    to: 3015093    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09340.1    Description:  CRB; binding / catalytic/ coenzyme binding. Identical to Uncharacterized protein At1g09340, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SA52;GB:O49260;GB:Q8LAU2;GB:Q8W4G5;GB:Q9T0N9); similar to mRNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G63140.1); similar to unknown [Populus trichocarpa] (GB:ABK95651.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73432.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96584.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 3015330    to: 3018236    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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