Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <------ZmHOX2a(1)            --------->SPL7           <------NtERF2          <------NtERF2          --------->LBD16         <---------DEAR3(1)        <------NtERF2        --------->ATERF1(1)        <---------LBD16       ------>NtERF2       <---------ATERF1(1)      <---------PCF5      <---------PCF2      <---------DEAR3(1)      --------->TCP20      --------->TCP15(1)     <------NtERF2     --------->ATERF1(1)    --------->LBD16    <---------ERF1  --------->At4g35610    <---------RAP2.3(1)    <---------RRTF1(1)                                         <----------DOF2    <---------ATERF1(1)         --------->ETT(2)          XXXXXXXXXXXXXXXXXXXXX>MIR853   <---------ANAC58 <---------ZAT2                      ---------->ID1                 --------->ANAC46   <---------ANAC46 <---------At4g35610                <-----------HVH21            <---------ARR14(2)   <---------ANAC58 --------->ZAT2                 <---------ANAC46                 --------->ARR14(2)   <---------DEAR3(1)           <---------ETT(2)   <---------ANAC58                 --------->ZAT14  <---------LBD16  ------->TEIL--------->DDF1      <---------ANAC58              <---------ANAC46   cattggcggggccggaggacgaagctgactcatgtcgacaacttccttcagtggcttcgtcccctctttatcgaagaagagcgtcgtatactcgacttgg  3012000                                                                                                    <                                                               --------->ANAC58                     -                                                               <------NtERF2                       --                                                               --------->ANAC58                    --                                                              ------>NtERF2                        <-                                                              --------->At4g35610                 <--            ------>ZmHOX2a(1)                                 --------->LBD16                   <----           --------->TOE2(3)       <---------MYB46(3)         <---------LBD16                <-------           --------->TOE1(3)      <---------YAB1             --------->DEAR3(1)         --------->GLK1(1)        <---------ARR14(2)      ----------->GT1              <---------ANAC46      <---------ZAT2 <--        --------->ARR14(2)      <------MYB83                --------->ATERF1(1)    --------->At4g35610     ------->GAMYB              <------MYB46(1)            --------->ZAT2          <---------At4g35610    --------->ANAC46           --------->ALFIN1     ------->TEIL--------->LBD16    --------->ZAT2----   <---------LBD16             <---------AtMYB61<---------TOE1(2)                <------NtERF2<------  --------->MYB52(1) <------ZmHOX2a(1)   <----------DOF2 <-------PIF5          <---------DEAR3(1)<---  <-----------GT1  <---------TOE2(3)     <---------DAG2  ------->PIF5        <-----------HVH21-------   catttaacggaatccttatctgaggaagatgggatggtgattacttttcccatgtaccacgagccgcggaatccaatctcgtcggagctgatttctacgg  3012100   <-----------RAV1(2) ------>NtERF2 ---------ARR14(2) -------->ARR14(2) ------->RAP2.3(1)                                                               <---------At4g35610 ------->ATERF1(1)                                                            <---------At4g35610 -----NtERF2                                                        --------->ZAT2 -------RAP2.3(1)                                                   <---------At4g35610     --------- -----LBD16                                                         --------->At4g35610   <------NtERF2 --LBD16   <---------TOE2(3)                                     --------->At4g35610     --------->LBD16 -------ATERF1(1)                                                <---------At4g35610    --------->DEAR3(1) ----->ALFIN1                                                  <------ZmHOX2a(1) --------->At4g35610 ---DEAR3(1)                                            --------->ICU4<----------DOF2  <---------LBD16 ------DEAR3(1)                   <---------GLK1(2)    --------->GLK1(1)      ------>ZmHOX2a(1) -->ANAC46 <---------TOE1(3) <----------DOF2           <---------GLK1(1)  --------------------->WRI1   cggagccaggtttgaggtaagaagggagacgctttcgattcgctctcgtagccatggaattcttaggagcagctttcttcctctgcttcgccggagatga  3012200                      ----------->RAV1(1)                    <------NtERF2                   --------->ANAC46                   --------->ANAC58                   --------->ANAC58                   --------->RAP2.6(2)                 ------>NtERF2               --------->ATERF1(1)          ------>ZmHOX2a(2)                                            <------NtERF2          <---------DEAR3(1)  <-------GAMYB<---------TOE2(3)          --------->LBD16         <------ZmHOX2a(2)   <---------ANAC58         --------->LBD16<---------ANAC58        <---------ARR14(2)   <---------bZIP60(2)     <---------LBD16 <---------ANAC58            ----        --------->ARR14(2)   <---------ANAC58       <---------LBD16  <---------ANAC46     --------->GLK1(2)       <---------GLK1(1)     <---------ANAC46     ------->TEIL      <---------LBD16  <---------ZAT6 >At4g35610   <---------ATERF1(1)      <-----------HVH21 ---------->DOF2  ----------->ARR10  --------   aaccccaagagatcggcgaggccgcaacatggcgttgcaagtgtcaaggatgaatcggggaaaggaaactggcgggaagaattggtagtgagaatcaaag  3012300                                                                                               ------                                                                                               <-----                                                                                               <-----                                                                                              -------                                                                    ---------->DOF2          <-------               <---------TOE1(3)                       <----------DOF2                      <--------         <----------DOF2                              <---------ANAC58         --------->ARR11(3)       <---------At4g35610                            <---------ANAC58         <---------ARR11(3)       --------->At4g35610                    --------->DAG2   --------->GLK1(1)        <----------DOF2 ------>DOF2   <---------TOE2(3)             ---------->DOF2   <---------GLK1(1)    <-----------GT1 -->DOF2 <---------DAG2        <---------GLK1(1)  <----------DOF2*TSS          <---------GLK1(2)   aaaggaatcagctttttagggttttggggtttgatttctcaatttcaaaaagctttgcttttgggatatcaaaagtctctagatttttagcttttaacgt  3012400                                                   <------MYB46(1)                                                   <------MYB83                                                   ----------->GT1    ----------->GT1                     ------------>CBF           <------------CBF --------->ATHB12 --->TOE2(3)        --------->TOE2(3)         <---------TOE2(3)  <---------ICU4 ------TGA1      <---------GLK1(2)      --------->ARR14(2)      --------->ICU4 ------HVH21   <---------AHL20(1)       <---------ARR11(3)      <---------YAB1 -->ANAC46     <---------ARR11(3)       --------->ARR11(3)     --------->ARR11(3)                  <- --TOE2(3)     --------->AHL20(1)       <---------ARR14(2)--------->DAG2           <---------REM1(1)< ---GT1--------->GLK1(1)              ----------->ARR10  ---------->DOF2   ---------->DOF2      <----   cagaaacagaaacccaaaatattctcaatagatttgtggtaagatactgagattggtgaaaaagtgatcatgggctaaaaagaggttgtagcccaagttc  3012500                                                              <---------ICU4                                                        --------->YAB1                                                  <---------AHL20(2)                         --------->AHL20(2)       --------->AHL20(2)                         <---------AHL20(2)      <---------AHL20(1)                        <---------AHL20(2)       <---------AHL20(2)                        <---------AHL20(1)  --------->TOE2(3) --------->YAB1                        --------->AHL20(1) --------->ANAC58  --------->ICU4                        --------->AHL20(2) --------->ANAC58--------->YAB1      ----------->GT1 --------DAG2        ------>MYB83          ----------->GT1<---------YAB1       --------->YAB1    <--- ----------DOF2      ------>MYB46(1) ---------->DOF2   <---------YAB1<----------DOF2        <-------- -------GT1      ------>NtERF2    <----------DOF2--------->AHL20(2)  ------>ZmHOX2a(1)     <---------ATHB12   acctttttttaacttgggccaccaaatttatttgggcttaaaagaacgtaaattattttcataataatgtcctttactcagtagtaatttcaaatcattt  3012600                                          --------->ZAT14                                          <---------ZAT14                 <---------ZAT6                                      ------>ZmHOX2a(2)                   ----------->GT1                                     <---------GLK1(1)              <---------HSFC1(2)      ---------                                    --------->ARR11(3)              --------->HSFC1(2)--------->At4g35610 --------GT1                        <---------ARR11(3)          --------->ANAC46      <---------At4g35610 -ICU4                      --------->At4g35610     ----------->GT1------->TEIL  <---------ICU4     -   ctctcttctcatgtctcatgaaacaacatcatctacatgatctctgctctgcattagtaaatcaccacgaagcttagtgttaataagtagctcaccaaaa  3012700                                           <---------ARR14(2)            ----------->RAV1(2)      <-------MYC2        ------->TEIL                 ------->MYC2      <-------TEIL                   <-------MYC3              <----------DOF2                    <-- >AtMYB61   =================RAV <-------TEIL          <------ZmHOX2a(2)           <----------DOF2--- --------->DOF2  ----------->RAV1(1) ------->MYC3    <------ZmHOX2a(1)    <---------YAB1         <---   caaaaagatgcatcgcctgcaacatgaacagaagatgcatatgcagaattggaaaggatcagagactttaaaatttctgatttttctttagggctaatat  3012800            --------->TOE1(2)   --------->YAB1          ----------->GT1                                            --------->ARR11(3) -------ANAC55(2)    <-------TEIL  <---------ANAC55(2)        ---------->DOF2         <---------ARR11(3) ------>ANAC55(2)   --------->AtLEC2 <--------P         <-------TEIL                 <---------CCA1(2) ----TEIL  --------->AtMYB61--------->TOE2(3)   ----------->GT1             <------ZmHOX2a(1)   acgtataataagaccatacgagatgcaaaatgttaataggtaagtcgaaaatgtaaaatacatagaaagacgaatataggacctcttaaatcttacaaaa  3012900  Previous    Next  AGI:  At1g09320.1    Description:  agenet domain-containing protein. similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G06520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17405.1); contains InterPro domain Tudor-like, plant (InterPro:IPR014002); contains InterPro domain Agenet; (InterPro:IPR008395) Range:  from: 3009943    to: 3012365    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09330.1    Description:  Identical to Uncharacterized FAM18-like protein At1g09330 [Arabidopsis Thaliana] (GB:Q8LEK2;GB:Q9ZPZ2); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96699.1); contains InterPro domain Protein of unknown function DUF846, eukaryotic; (InterPro:IPR008564) Range:  from: 3012764    to: 3015093    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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