Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------ANAC58       <---------ANAC58 --------TOE2(3)           <---------YAB1 ---------->DOF2                                          <- -----WOX13(1)          <-------TEIL    --------->ANAC46                                        <---- ->AHL20(2)       ---------->DOF2  <<<<<<<<<<GATA-1                                             ----- --AHL20(2)   --------->ANAC58    --------->GLK1(1)                      <------ZmHOX2a(1)  <-------- >AHL20(2)    --------->ANAC58    <---------GLK1(1)            ----------->HVH21         ---------->DOF2   tgacgatgtgcttgagaagcaaaagcttcattcttgaaatccacaaaagcagcgtttctcaatctgtgacaagtaggattatatgtcaagttagagcagt  2982200                                                       --------->YAB1                                                     --------->AtLEC2  <---------GLK1(2)                             <-----------GT1 --------ALFIN1                          <---------MYB59 ---------->DOF2 -----ARR14(2)       --------->DAG2      --------->TOE1(3)                              <----------DOF2 ---->ARR14(2)      ---------->DOF2      --------->TOE2(3)                             <---------DAG2 -ZAT18    <---------ZAT6     <---------ALFIN1<---------ICU4                        <-----------GT1   tccacattctctagagtaaacaaaaagtctttccaccttgtaacctaaatattccattcaaaagcctgatgaacaaaaactgtctataaccttttcagtc  2982300                                                               <---------HSFB2a(2)                                                              <---------ANAC58               <---------HSFC1(2)                             <---------ANAC58                    ---               --------->HSFB2a(1)                            <---------ANAC46                    <--               <---------HSFB2a(1)       --------->AHL20(2)  --------->At4g35610        --------->ANAC58               --------->HSFC1(2)      --------->ANAC58     --------->MYB111(2) <---------LBD16------             <<<<<<<ZML2               --------->ANAC58    <--------P     <----------DOF2     -------          --------->HSFB2a(2)          --------->ANAC46 --------->DAG2 <---------AHL20(2) <------ZmHOX2a(1)          <---------HSFB2a(2)   ------->TEIL          ---------->DOF2  <-----------GT1  --------->ANAC58      --------->GLK1(1)      <---------YAB1     ---------->DOF2--------->HSFB2a(2)--------->LBD16----   ttctacagaaatctagaaccttcttactaatatgaatctccaagtaaatagaaaggaaaaggttgctggaaatttactttccaccggagcaaggacgaac  2982400         <---------ZAT14         <---------SPL7         --------->ZAT14         <---------SPL1(2)    <---------HSFC1(2)                                                                --------->RAP2.6(3)    --------->At4g35610                                                               --------->SPL7    --------->HSFB2a(1)                                                              --------->ARR14(2)    --------->HSFC1(2)                                     --------->At4g35610       --------->MYB52(1)    --------->ZAT2                                         <---------HSFB2a(1)      <---------SPL7    <---------HSFB2a(1)                       --------->GLK1(1)                    --------->LBD16 ------>At4g35610                             <---------GLK1(1)                   --------->ANAC46 -- -------At4g35610                           <------ZmHOX2a(1)                    <---------LBD16   -- ---->DOF2 --------->SPL7             --------->YAB1       <---------At4g35610  <-----------------AGL1 -->MYB52(1)                        <---------ARR11(3)     --------->HSFB2a(1) <---------At5g28300 -- ------->RAV1(1)  ---------->DOF2   --------->ARR11(3)  <------ZmHOX2a(1)      -------->P         ---   agcagaagctccgtactgagaaaagagccgagagacgatatcatgaggaattccatcaggaagatgccgaactagaagagttaccccgaacggctctgta  2982500                                                              --------->ATHB12                                                    <-------MYC3                                       ------>NtERF2<-------MYC2                            <-------TEIL<------NtERF2         <--------HAHB4                           --------->CCA1(2)        <-------PIF5                          --------->ARR14(2) <-----------HVH21<---------ICU4                          <---------ARR14(2)<-----------RAV1(1)                      <------NtERF2   --------->ARR14(2)      --------->ATHB51                     --------->LBD16 --------->ZAT2 ------->MYC2                     ------>NtERF2   <------NtERF2  ------->MYC4                    <---------LBD16  --------->ATERF1(1)     <---------YAB1                   <---------LBD16  <---------DEAR3(2)       --------->ICU4                   <------NtERF2    <---------ATERF1(1)   <-----------------AGL3                   --------->ATERF1(1)<---------ARR14(2)  ----------------->AGL3               <-----------HVH21    ------>NtERF2   ------->PIF5              <---------ANAC58     <---------DEAR3(1)--------->ALFIN1              <---------ANAC58  --------->DEAR3(1)  ------->PIF4              <---------ANAC46<---------At5g28300   ------->MYC3      <-------TEIL------>NtERF2--------->ANAC46   <---------TOE1(2) ------->TOE1(3)  <---------RAP2.3(1)<---------ZAT2 <-------PIF4<---------YAB1 ------->TOE2(2) <---------DEAR3(1)--------->RAP2.6(2)   ------>NtERF2 ------->TOE1(2)--------->ATERF1(1)<---------ATERF1(2)--------->At4g35610 -------->RAV1(2)--------->DEAR3(1)--------->ATERF1(2)--------->ZAT14                         -------   acctgagattcaaattgcgtcgccgggagattcacggccggctccgatgtcgcatgtgcagccattattagagctcgaaaacccaaactcagaacgatga  2982600                  --------->ATHB12                            ------>MYB83             <---------AHL20(2)                             <---------MYB46(2)            --------->AHL20(2)                             ----------------->AGL1                 <--            <---------AHL20(1)                            <---------At5g28300                     ---            --------->YAB1                   <----------DOF2<---------MYB59                      ----    <----------DOF2       *TSS      --------->LBD16      <-----------GT1                         <--- ---->HVH21 <---------AHL20(2)  <-----------GT1     <--------P------>MYB46(1)        <------------CBF   catgttcttttcaataaaattgatttgggagattaaaccggactagactttggggtaagttaccgaaccagaaaaaccaagagagaagattgaatcaaac  2982700                                          --------->ALFIN1                                         <-------MYC3                                         ------->MYC3                                        ==========================================MYC_MYB                                        <---------O2                                        --------->O2                                        <---------TGA1a                                        --------->TGA1a                                        <-----------RAV1(1)                                       ------->MYC3                                       <-------MYC3                                      ============================================MYC_MYB                                      <---------TGA1a                                      --------->TGA1a                                <----------DOF2                             =====================bZIP_DOF                       <---------CCA1(2)                             <----------DOF2       <---------AHL20(2)           ------>MYB46(1)                             <---------DAG2        --------->AHL20(2)           ------>MYB83 -------LBD16                ===================bZIP_DOF                      <---------MYB59 ------>LBD16   ==================================bZIP_DOF                ------->GAMYB ----->TOE1(2)  ---------->DOF2     <---------ALFIN1                     --------->MYB46(3) ------LBD16    ================================bZIP_DOF               --------->MYB52(1)  <---------   cggggagacgttttgttttaaagtgtatgggcttttccacacatgtggcccattaaaatgttttttttttggttaacagacctatctctttagctttggc  2982800                                              <---------WOX13(1)                 <---------ARR11(3)        <---------YAB1                 --------->ARR11(3)        <---------AHL20(2)                <---------CCA1(2)        --------->TOE2(3)              <---------AHL20(2)         --------------->AGL15              --------->AHL20(2)         <----------DOF2       --------->ZAT6          --------->ATHB12               <---------------AGL15<---------TOE2(3)          <--------HAHB4              <-----------GT1        <-----------GT1          --------->YAB1      <---------AHL20(2)           --------->AHL20(2)          <---------ICU4     --------->ARR11(3)        <---------AHL20(1)         <---------ATHB12    <---------ARR11(3)        --------->AHL20(1)       --------->YAB1        --------->AHL20(1)        --------->AHL20(2)       --------->WOX13(1)    <---------AHL20(1)        <---------AHL20(2)    ----------->RAV1(1)      <---------AHL20(2)       <---------AHL20(2) -DOF2--------->MYB46(3)     --------->AHL20(2)       --------->AHL20(2)      --------->AHL20(2)   <-   aaatggcaacaatcatttaaatcttcagtaatatattttgttactttaattgataaataaatttaacattacaaaaaaaaaaaaatcaatagatagatgt  2982900                     <---------AHL20(2)                    <---------AHL20(1)                    --------->AHL20(1)                    <---------AHL20(2)                    --------->AHL20(2)                   <---------AHL20(2)                   --------->AHL20(2)                --------->AHL20(2)                <---------AHL20(2)                --------->AHL20(1)               --------->AHL20(2)                                                                   <           <------ZmHOX2a(1)             <---------KAN4(2)                                    <------          ----------->GT1     ---------->DOF2                                               --------- --------TOE2(3)<---------AHL20(1)   >>>>>>>>>TBF1                      --------->YAB1      <--------   taatgtaacatgaggaaataaattaattttgaaaaagaagaagaataaactgggagatggacaatgcaatccaataagaagatagagttgatagtgaagt  2983000                                                                                              <------                                                                                            ---------                  <---------ANAC58                                                         --------->ICU4                  --------->ANAC55(2)                                               <---------ANAC46      <---------------AGL15      <----------DOF2                                    <---------ANAC58 ---------ICU4    <---------ANAC58                         <---------YAB1           <---------ANAC58 ---ANAC46        <---------ANAC55(2)                      <---------TOE2(3)       --------------->AtSPL8 >ZAT14          --------->MYB52(2)  <----------DOF2   --------->TOE1(3)           <---------------AtSPL8 -ZAT14      ----------->GT1  <-----------GT1          --------->TOE2(3)           --------------->AtSPL3   gaacatgactataacaggttacttgactaaatatactttctttcatccgtttcaaaacattaacattgacaaatttttgtaagttttcgtacaattatca  2983100  Previous    Next  AGI:  At1g09230.1    Description:  RNA recognition motif (RRM)-containing protein. similar to Os03g0326600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049993.1); similar to hypothetical protein OsI_011079 [Oryza sativa (indica cultivar-group)] (GB:EAY89846.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 2979522    to: 2982626    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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