Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------ARR14(2)             ------->TEIL                                                            --------->ARR11(3)      <---------ATHB12                                                               <---------ARR11(3) ---------->RAV1(1)                                                             --------->AHL20(2) ------->REM1(1)                           ----------->GT1              ----------->GT1        ------ -->ZmHOX2a(1)          ---------->DOF2--------->GLK1(2)         ---------->DOF2<---------YAB1<------ -ARR10      --------->ARR14(2)     --------->AHL20(2)     <---------ATHB12     <---------AHL20(2)   tacaacaaatcaacgtatttgagagaaaaagacatcaaaaaattctggtgaatttcatccaatgagcaaaagaccagtaaatataaatgtcttctaatca  2938900                                                               ---------->DOF2                                                          ----------->GT1                                                        <---------WOX13(1)                                                     --------->WRKY12     <--------HAHB4                                  --------->WRKY38(1)     --------->YAB1                             --------->ARR11(3)    <---------YAB1                              <---------ARR11(3)                      <---------YAB1    <---------AHL20(2)                         <---------GLK1(1)        --------->CCA1(2) --->YAB1          --------->YAB1  <---------ANAC46<----------DOF2 ----------->GT1      <---------TOE2(3) ---ATHB12 <---------MYB59     <----------DOF2 <---------CCA1(2)--------->DAG2         <---------DOF5.7(2)   tattctataattatctaactataaaaacaagtactttgagtgaatttcgatatctttgactgataaaaagtgtgatatgaaacaagagttatcgttgctc  2939000                                                              --------->At4g35610                                                              <---------At4g35610                  --                                                              <---------ZAT2                       <-                                                              --------->ZAT2                       <-                                                        --------->ICU4                             --                                 --------->ALFIN1 <---------TOE2(3)                                <-                             ---------->DOF2      <---------TOE1(3)                        --------->ANAC46                            --------->YAB1<---------ATHB12  --------->ZAT18     <-----------GT1   ---                           <---------ATHB12--------->YAB1   <---------ZAT18    --------->AHL20(1)<---   tcagacatcatccatcttcttcaaaactaatcaaagtgtcgctaatcaaattaaggtaatagtgagcttggaatgaagaaatatactagttccaagtagc  2939100                                                           <---------MYB52(1)                                                     <---------ARR14(2)                                                     <---------ARR11(1)                                               <---------ARR14(2)         --------->AHL20(2)                    --------->ARR14(2)     --------->AHL20(2)                     <---------TOE2(3)<---------MYB46(3) ------->ZAT2                       ----------->HVH21--------->ARR14(2) --------ZAT2                     <---------MYB46(3) --------->GLK1(2) --------At4g35610                <------MYB83<------ZmHOX2a(1)                              <------- ------->At4g35610                <------MYB46(1)    <-----------ARR10                      --------- -----NtERF2                     <---------AtMYB61   ------->TEIL                      <---------bZIP60(1) -------->RAV1(1)                --------->ALFIN1   <---------ARR14(1)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------ATERF1(2)                 <---------DEAR3(1) <---------CCA1(2)--------->CCA1(2) --------->bZIP60(1)   cagcagattaaaaatatagagagaagagagagagggtggtgaccttgaggatgcgaatctcgttggctaagagacgagaagctctaccgatgtcatcagt  2939200                                                  <---------MYB52(1)                                             --------->DEAR3(1)                                           <---------ATERF1(1)                                        --------->LBD16                                        ------>NtERF2                                       --------->ANAC58                                       --------->DEAR3(1)                                       --------->ANAC58                                       --------->ANAC46                                      <---------LBD16                                     ------>ZmHOX2a(1)               ----------->RAV1(2)                                 <---------ARR14(2)              --------->At4g35610                                 <---------ARR11(1)     <---------At4g35610              <------MYB46(1)    --------->ARR14(2)     --------->At4g35610  --------->WOX13(1)     < --ICU4       <------MYB83      <---------CCA1(2)<-------GAMYB   <---------At4g35610                - >ICU4      <--------P     <---------ZAT2 --------->DEAR3(1)  <---------MYB52(1)               ------   agtcatggaagctagttggtctccctcgaagctcgtatcctccgccatcgccgttgccatctcccttagcagcctgagttaatcactgtaagagtctacg  2939300       --------->At4g35610       <---------At4g35610   =========================HOX2a_HOX2a                                      ----------->GT1   ------>ZmHOX2a(2)                                                   ------->MYC3  <---------GLK1(1)                                           --------->AHL20(2)  <------ZmHOX2a(2)                                           <---------AHL20(2)                 ----  ==========================HOX2a_HOX2a                      <---------AHL20(2)             --------- --------->ARR11(3)                 <----------DOF2          --------->AHL20(2)         <---------YAB1 <---------ARR11(3)                <---------ANAC58          <---------AHL20(1)       <---------ICU4 ---------GLK1(1)           *TSS   <---------ANAC58          --------->AHL20(1)   --------->AHL20(2) -------->GLK1(1)    <------ZmHOX2a(1)                   <---------AHL20(2)<------------CBF<---------YAB1 --->ANAC46<-----------------------TaNAC69(2)          <----------DOF2 <-------MYC3<---------AHL20(2)   agagatctcagaagacataaataggaaacagagtttggcttttgggcgaagaaacagctttaatttaataacacatgtattgtattaaatattatcacag  2939400                                              <---------ANAC58                                              <---------ANAC58                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                        --------->ARR11(3)                                        <---------ARR14(2)                                        xxxxxxxxxxxxxxxx>smallRNA(fl3)                                        <---------ARR11(3)                                      <---------ARR11(3)                                      xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     <------ZmHOX2a(1)                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  xxxxxxxxxxxxxxx>smallRNA(se3)                                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                  xxxxxxxxxxxxxxx>smallRNA(le3)                                  xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 xxxxxxxxxxxxxxxx>smallRNA(se3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 <---------MYB52(1)                               <---------MYB46(3)                              xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           xxxxxxxxxxxxxxxx>smallRNA(s)                           xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                        <---------SPL7--------->ARR11(3)                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       <---------ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------ANAC46--------->GLK1(1)                      xxxxxxxxxxxxxxxx>smallRNA(s)                      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxx>smallRNA(i)                     xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxx>smallRNA(s)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxx>smallRNA(i)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxx>smallRNA(s)                    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                    xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   *TSS<---------ANAC58<---------GLK1(1)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxx>smallRNA(i)<----------DOF2                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)              xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)          xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------LBD16                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxx>smallRNA(le3)             xxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   --------->ARR14(2)                   xxxxxxxxxxxxxxx>smallRNA(si3)         xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------GLK1(1)                   xxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ARR14(2)                   xxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->LBD16           <---------At4g35610                   xxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  xxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <-----------RAV1(2)     <------NtERF2                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)              --------->ARR14(2)xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     ------>NtERF2              <---------ARR14(2)xxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxx>smallRNA(i)         ----------->RAV1(1) <---------At4g35610xxxxxxxxxxxxxxxx>smallRNA(s) --------->LBD16        --------->MYB46(3)--------->SPL7--------->ARR14(2) --------->GLK1(1)--------->LBD16      ------>MYB46(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      ----------->RAV1(1)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)    <---------MYB59xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<------ZmHOX2a(1)  <---------LBD16    --------->MYB46(3)xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(s)<------NtERF2   --------->ANAC58xxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->ANAC46        --------->ANAC46   --------->ANAC58xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)----------->HVH21<---------LBD16   --------->ANAC46xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s) -------->CBF<---------GLK1(1)xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->LBD16  --------->At4g35610 >YAB1------>MYB83xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(s)   tcaatacccaacaacaaatccgatgtcgtccagcggttaggatatctggctttcacccaggagacccgggttcgattcccggcatcggagcgtttttggt  2939500              <---------AHL20(2)          <---------AHL20(2)                                                                       <-      ------>ZmHOX2a(1)          <---------CCA1(2)                   ----------->GT1               --      <----------DOF2      ------->TEIL  <---------AHL20(2)     --------->WOX13(1)          ---------  <-----------GT1         <---------CCA1(2)                  --------->ANAC58      <---------REM1(1) <---------CCA1(2) <-----------GT1--------->ARR11(3)         --------->ANAC58  <---------TOE2(3)-----   tttgtatcctttttatttttttcacaatgtatcttatatctattttaaaatcaagttattgctaagcaatctggtcaaattgatgatgtagttttcttaa  2939600                                         --------->GLK1(2)                                  --------->ANAC58 --------At4g35610                --------->ANAC58 ------->At4g35610 --------->ANAC58   --------->ANAC58                                          <---- >TOE2(3)---------->DOF2   ----------->GT1                                                    <------ ----->DOF2        --------->ANAC58   --------->ANAC58            ----------->GT1   <---------YAB1   aagctgaccaaaaaagaagtgaagccaaatggaaacaagtaagaaactgttcaatattcaaatcggaagggtgaagaagagagttgaagattgtatttac  2939700                                                          <---------GLK1(2)                                                ------>ZmHOX2a(1)                                              ==========================HOX2a_HOX2a                                             ===========================HOX2a_HOX2a                                             <------ZmHOX2a(2)                                            <---------ARR14(3)                                            <---------GLK1(2)                                  <---------AHL20(1)    <---------YAB1                                 --------->YAB1 <----------DOF2       ------->GAMYB            <---------YAB1------>ZmHOX2a(2)      --------->MYB46(3)      --------->YAB1--------->ARR14(3)      <---------MYB52(2)  <---------AHL20(2)--------->ARR11(3)    --------->MYB52(1)   --------->AHL20(2) <---------ARR14(2)          <---------TOE1(2) -----YAB1           <---------YAB1         --------->ARR14(2)          <---------TOE2(2) -----GT1 --------->MYB46(3) <---------YAB1 <---------ARR11(3)   ------>ZmHOX2a(1)         --------->ATHB12   tattgctaacgaacaaacacattacaattttatcataatatttcaagatcctttaagtatgattctcctaatcgcatgttcacatttaccaagtgatttg  2939800  Previous    Next  AGI:  At1g09100.1    Description:  RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B); ATPase/ calmodulin binding. Identical to 26S protease regulatory subunit 6A homolog [Arabidopsis Thaliana] (GB:O04019); similar to RPT5A (regulatory particle triple-A 5A), ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G05530.1); similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (GB:O23894); similar to hypothetical protein [Vitis vinifera] (GB:CAN80003.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70961.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, cor Range:  from: 2936530    to: 2939328    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g09110.1    Description:  pre-tRNA. tRNA-Glu (anticodon: TTC) Range:  from: 2939419    to: 2939490    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g09130.1    Description:  ATP-dependent Clp protease proteolytic subunit, putative. Identical to ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplast precursor (CLPR3) [Arabidopsis Thaliana] (GB:Q8L770;GB:O04018;GB:Q67XY5;GB:Q680D2); similar to CLPR1 (Clp protease proteolytic subunit 5), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G49970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17521.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) Range:  from: 2939572    to: 2942269    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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