Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------ANAC58                                                                     <---------ANAC58                                                                  <----------DOF2                                                                 ------>ZmHOX2a(2)                                                                <------ZmHOX2a(2)                    --------->ATHB12                           <---------ARR11(3)                    <--------ATHB1                             --------->ARR11(3)                    -------->HAHB4                             <---------ARR14(2)                   <---------ATHB12           ------>ZmHOX2a(1)--------->AGP1                  <---------TOE2(3)           ==========================HOX2a_HOX2a       ------->TEIL<---------YAB1             =========================HOX2a_HOX2a       <-------TEIL--------->ICU4   --------->ATHB12           --------->ARR14(2)     --------->AHL20(2)   <---------------AtSPL8           --------->ATHB51           <-----------ARR10      <---------ATHB51 ---->YAB1       --------->YAB1    <---------YAB1              <---------AGP1         <---------AHL20(2) ->WOX13(1)     --------->ICU4     --------->ICU4             <---------CCA1(2) ----------->GT1   acaaacatgtacattgtattaatgattcaacattgacattattgaatccttctggtctctctacagatctttcttggcttcatagtaaataattcagaac  2908600                         --------->At4g35610                         <---------ZAT2                         --------->ZAT2                           <---------MYB46(3)       <------MYB46(1)                         <---------At4g35610                      <------MYB83             <---------MYB46(3)                        <---------ARR14(2)          --------->AHL20(2)                    <---------AtMYB61                        --------->ARR14(2)          --------->AHL20(1)                   <--------P                       <------ZmHOX2a(1)            <---------AHL20(1)     --------->ANAC46<------MYB83                    <------NtERF2                   <---------AHL20(2)--------------->AtSPL3                   <---------TOE1(1)               --------->AHL20(2) --------------->AtSPL8     <---               ------->GAMYB              --------->MYB46(3)  --------->ATHB12         <-----------RAV1(1)           <---------WRKY12 --------->At4g35610  --------->YAB1   <------MYB46(1)      <---------ZAT6   ttagatgtctagttcaacgggccgaggagctgcttcccttctcaacaactctaataaattttgtcgattggttctgtacatcacttctagtgttggtttc  2908700                                                                                        --------->TGA2(2)                                                                                        --------->ATERF1(1)                                                                                       <-----------HVH21                                                                                       ------>NtERF2                                                                                       <-----------TGA1                                                                                      <---------bZIP60(1)                                                                                   --------->ANAC46                          <-----------RAV1(1)                  <---------ANAC58    <---------DEAR3(1)                        <----------DOF2                        <---------ANAC58   <---------LBD16                       --------->TOE2(3)                    --------->At5g28300  <---------ALFIN1              --------->YAB1                              --------->ANAC46      --------->MYB46(3)              <---------ICU4                              --------->ANAC58    ------>MYB46(1)              --------->ATHB12                         <---------REM1(2)      -------->P<------NtERF2              -------->ATHB1             <----------DOF2  --------->ANAC58    ------>MYB83 <---------At4g35610 -------DOF2 <---------YAB1     <---------At4g35610   <----------DOF2  <---------At4g35610 --------->At4g35610   tttctcattcccactatcattgctacctttgttgtgctcagttctttctctctcggcttcacggtacttgtgaagatgcctacccacggcgtcagcatag  2908800                         ----------->RAV1(1)                       --------->ZAT18                                                         ------              --------->At4g35610              --------->DEAR3(1)        <---------ZAT14 --------->ANAC58              <---------At4g35610 <---------ANAC58      --------->ARR14(2)               --------->ANAC58              <---------ZAT14     <---------ANAC58      <---------ARR14(2)    <---------At4g35610             --------->ALFIN1--------->At4g35610        <---------GLK1(2)--------->ZAT14<---------TOE1(2)        <------NtERF2  --------->DEAR3(1)    <---------At5g28300<-----------RAV1(1)     <---------TOE2(2)     ------>NtERF2   --------->PCF2         <-----------GT1   ----------->RAV1(2)      <---------AtLEC2   ttatcgaggccgagagtgctgagagcccaccagatgtcgtctccattcaccgtcttccgattctccctgtggcacttctctgatgcttcgcatgtaacaa  2908900                                                     <----------DOF2    --------->GLK1(1)                                                    ------>ZmHOX2a(2)   <---------GLK1(1)                                                    =========================HOX2a_HOX2a                                                   <------ZmHOX2a(2)   <---------ARR14(2)                                                   ==========================HOX2a_HOX2a                                                  --------->ARR11(3)   --------->ARR14(2)                                                  <---------ARR11(3)  <------ZmHOX2a(1)                                           <----------DOF2           ----------->ARR10           <-------GAMYB               <---------ANAC58              <------MYB46(1)      ------->TEIL--------->KAN4(2)    <---------ANAC58              <------MYB83 ---->DOF2<-----------RAV1(1) <---------MYB52(1)  --------->AGP1   <--------P              <<<<<<<<<<   agcttatgaactctgttgcacattcttgaactgtttgttttgcttcttttgagatctttgcatttgatggtaggatttgcttcataagtctccctacatt  2909000                                                           --------->ZAT2             <-----------GT1                                                           --------->At4g35610    <-----------TBP                                                           <---------At4g35610  <----------DOF2                                                       <-----------HVH21       <---------DAG2                                     <----------DOF2  --------->WOX13(1)       --------->TOE2(3)         --------->MYB46(3)      ---------->ID1    ------->TEIL             <-----------GT1 <<<<<<<LFY--------->GLK1(2)    <-----------GT1    --------->GLK1(2)     --------->YAB1           ---   ggctattggcaacaatctatcttcgtctgtcatttttctcttttgtttcagtgaatctatcagctctcgcttctcttataacctttttatacaagttgtc  2909100                                      --------->ALFIN1                                      <---------ANAC46                                    <---------ANAC46                                  <---------AHL20(2)                                    <---------ANAC58                                  --------->AHL20(2)                             --------->AHL20(2)                              -------->P            <-                             <-----------TBP                                 ------>MYB46(1)<--------                  <---------------AGL15                                      ------>MYB83   ---------                 ----------------->AGL3                                    <---------MYB59<----------                 ====================================================================================   <-----------GT1--------------->AGL15            --------->YAB1          <---------MYB111(1)   ----  ----------->HVH21 <-----------TBP <---------ANAC58 <---------YAB1      ------->TEIL <---------AHL20(1) --->ZmHOX2a(1)  <-----------------AGL3    ------->TEIL     --------------->AtSPL3    --------->AHL20(1)   ctatatgaccctccctctctctatatatagattatatagggtgtgtatgtgtatgatgagtagatgtactacttgaacctactcttaatttattacatac  2909200                                                                                                   <-                     --------->GLK1(2)                                                             <-         <---------AHL20(1)                                                                        <-    --------->AHL20(2)                                                                          <---- <-----------TBP     --------->ARR14(1)                                                     <-------- <---------AHL20(2) <---------GLK1(2)                                    ----------->GT1   <---------MYB46(3) --------->AHL20(2) --------->ARR14(2)                                 --------->GLK1(2)  <---------YAB1 ----------TBP      --------->ARR11(3)                     --------->ANAC46            --------->MYB46(2) -ANAC55(2)         <---------ARR14(2)                     --------->ANAC58          <---------MYB52(1) >ANAC55(2)       ----------->ARR10               <---------At4g35610 --------->ARR14(2)<------MYB83 -GT1<---------AHL20(2)                          <---------TOE2(3)    <---------ARR14(2)<------MYB46(1) ============MADS_MADS                           <---------TOE1(3)    <---------GLK1(2)<---------MYB46(3) ----------->AGL15<---------TOE2(3)    ------->TEIL        --------->ANAC58    <-----------GT1<------   tatatatataatatatgtctaagattctctctgtatatatgtatgtgaattaagcttatataagctatagcagaatcgtttatacctgtttggtgattgt  2909300                                                            <---------ZAT14                                                            --------->ZAT14                                                          --------->ZAT14                                                       <-------TEIL                                               --------->ARR11(3)                                               <---------ARR11(3)                                   -                                               <---------ARR14(2)                          <---------ARR11(3)     <----------DOF2     --------->WOX13(1)    --------->ARR14(2)                      --------->AHL20(2) --------ANAC58        <---------YAB1         <---------CCA1(2)                        <---------AHL20(2) --------ANAC46        ------------>CBF       <---------GLK1(1)                       --------->AHL20(2) --------ANAC58       --------->TOE2(3)       --------->GLK1(1)                --------->ZAT6       < -----RAP2.6(2)<-------MYC3                  <---------ARR14(2)            --------->AHL20(2)>>>>>>>> ----CBF   ------>ZmHOX2a(2)                 --------->ARR14(2)     ----------->HVH21 <---------AHL20(2) -----RAV1(1)  ------->MYC3              <---------LBD16  <---------ZAT14----------->GT1   --------->ARR11(3)   ggcttagctttgatccatatgcatcatcaatccgtctaatacatacggatatctacgtacagtactgtatatgacaagttaatactaaattaatatctaa  2909400                                                                            <---------ANAC46             --------->AHL20(2)                                             <---------ANAC58             <---------AHL20(2)                                             <---------ANAC58           --------->TOE2(3)                                              <------MYB83           <----------DOF2                                                <------MYB46(1)     --------->TOE1(3)                                                  <--------P     --------->TOE2(3)                                                --------->ATHB12     --------->YAB1                                             --------->ANAC58   <---------ARR11(3)                                           --------->ANAC58   --------->ARR11(3)           <---------At4g35610      --------------->AGL15 <---------AHL20(2)         <---------ANAC58       <---------ATHB51   <---------MYB46(3)      ------- -------->AHL20(2)  --------->ATHB12               --------->ICU4    <---------ATHB12         ------- ---------AHL20(2) <---------YAB1    <----------DOF2  <---------YAB1 --------->ICU4  ----------->GT1 >RAP2.2   --------->TOE1(3)<---------ANAC58---------->DOF2  <---------REM1(1)  --------->HSFB2a(2)   aattaaatcttaactttaattttgattagagcgtagctactttggtaaaagaaattattcttgatgaagcaatggttggcttatggaatgtcaaaacctt  2909500  Previous    Next  AGI:  At1g09030.1    Description:  histone-like transcription factor (CBF/NF-Y) family protein. Identical to Nuclear transcription factor Y subunit B-4 (NFYB4) [Arabidopsis Thaliana] (GB:O04027); similar to histone-like transcription factor (CBF/NF-Y) family protein [Arabidopsis thaliana] (TAIR:AT2G47810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17563.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Transcription factor, CBFA/NFYB, DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 2908614    to: 2909033    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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