Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <------MYB46(1)                     --------->TOE2(3)                 <------MYB83               --------->YAB1                         --------->MYB111(1)            <---------ICU4                            --------->MYB46(2)            --------->YAB1                          <---------MYB52(1)                     ----------           <---------ATHB51               <---------ARR14(2)                        <---------------AGL15        ========================================MADS_MADS                           --------------->AGL15        --------------->AGL15             --------->ARR14(2)   <-----------HVH21   --------->TOE2(3)        <---------------AGL15   ====================================================================MADS_MADS       ----------------->AGL1   --------------->AGL15 --------->MYB59           <---------CCA1(2)   tttctgttttcgaataatggtaacctttgtataacttatttcagtatcgtctcagtttggtactatgtcagttttggtattcttatcttattgaagtaaa  2884000                          --------->ZAT14                          <---------ZAT14                          --------->ZAT2                          <---------ZAT2                       ----------->RAV1(2)                    <-----------GT1                           <---------ARR11(3)                <---------DAG2                                --------->ARR11(3)          --------->ARR14(2)                       ---------->DOF2      --------->ANAC58 <---------YAB1 <----------DOF2              <-----------RAV1(2)--------->TOE2(3)---------->DOF2  --- ->GT1    <---------ARR14(2)       >>>>>>>ZML2   ----------->HVH21      --------->ANAC58    ---------   aatgtgatagtgtattcgcttttctccctgcagcgttctagtctcgtccaggtgaaaggagggagaccttagacaagaaaatgaaaagaacatatcagaa  2884100                      --------->GLK1(2)               <---------HSFB2a(2)               --------->HSFB2a(2)             <---------REM1(1)           <-------GAMYB          --------->ALFIN1        <---------ANAC58        <---------ANAC46                         <----------DOF2 -------->GT1<---------ANAC46                    ------>ZmHOX2a(1)               ---------->DOF2   -- >YAB1  <---------ANAC58  ---------->DOF2     <------ZmHOX2a(2)             ------->TEIL  -----------   ttgtcaaattgggtgttgtagaagaatctaaagtgtttatgtctatcgatccttttctaaacgagaaatttagggatgaaccagaaagaagaatgtataa  2884200             --------->ZAT18                --------->YAB1   --------->ANAC58                         --------->TOE2(3)                          --------->ANAC46   --------->ANAC58                        ----------->GT1                      <---------YAB1     -- --------->GT1   <----------DOF2   <---------AHL20(2)                      <---------TOE2(3)   ------ >GT1        <---------ZAT18      <---------AHL20(2)       <----------DOF2 ----------->GT1    <------   actgtaagaaacaagtgtgcttttgacaaaagtttttttatttgaatgttaatttctgtgtctttatcacacatattaagttattatccacaaaatgtat  2884300                                                                                  <---------ICU4                                    <------ZmHOX2a(1)                             --------->YAB1                              --------->YAB1                                <----------DOF2                      ------------>CBF  <----------ID1                     ----------->GT1                     <------ZmHOX2a(1)---------->DOF2                   --------->ATERF1(1)      <---------CCA1(1)    --------->YAB1                           <---------ZAT14      <---------RVE1(1)    --------->AHL20(2)                       --------->ZAT14   <---------YAB1 ------->ATHB12     <----------ID1<---------TOE2(3)       <---------bZIP60(2)  --------->YAB1 ->TEIL   <---------AHL20(2)--------->AHL20(1)            <---------ANAC58------>NtERF2 ---CCA1(2)      ---------->DOF2  <---------TOE1(3)       <---------ANAC58--------->LBD16    <-------   ctcattggatatttaaaacaaaaggacaataatattaaggaaaagacaaaatagaaaatgacttggccactgtagccgcgttaataatgtgatagctttt  2884400                                                                      --------->ARR11(3)                                                                     --------->ATHB12                                                                     <---------ICU4                                                                    --------->ICU4                            -------->P                              <---------YAB1              <---------ANAC46                            <----------ID1              <---------ANAC58                   --------->REM1(1)<---------ICU4              <---------ANAC58                  <-------TEIL      --------->YAB1            ---------              *TSS          ------->TEIL     --------->ZAT2      <---------ATHB51         ---------->DOF2             --------->MYB52(2)              <---------ZAT2------>NtERF2           --------->ATHB12           <---------MYB52(1)         ---------->DOF2     <---------ETT(2)    <---------At4g35610    --------->ANAC46     --------->At4g35610 --------->At4g35610 <---------ATHB12 <---------YAB1 ---DOF2 ----------->GT1 <---------At4g35610 <---------At4g35610 --------->ICU4 <----------DOF2<-----   atctacaagaagcgttacttggtcgtcatctaccttctcagaaagggagctgcatcaatggcgaccaataatgattttggagctttcattgagaaagtta  2884500                               ------>ZmHOX2a(1)                            ------>NtERF2                           --------->DEAR3(1)                          <------NtERF2                          --------->ATERF1(1)                         ------>NtERF2                         <---------ATERF1(1)                         <---------RAP2.3(1)                        --------->DEAR3(1)                               --------->CCA1(2)                        <---------DEAR3(1)                               <---------GLK1(1)                       ---------->ID1            <----------DOF2         --------->GLK1(1)                      <-----------HVH21   <---------ARR11(3)            <---------ARR11(3)                     --------->O2    --------->ZAT14                    --------->ARR11(3) -->GT1              --------->ANAC46<---------REM1(2)     ---------->DOF2      <---------MYB111(2) ------GT1          ------>ZmHOX2a(1)<---------ZAT14      --------->AHL20(2)    <---------MYB111(1)   caatctctccaacttctacttcctcgtcgcctccttctctacagggtcttactttcgccattaaagacatgtaagatatccaactacttacagagtttct  2884600                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                        <---------------AGL15                                                                       ----------------->AGL3                                                                       <-----------------AGL2                                                                       <-----------------AGL1                                                                       ----------------->AGL2                                                                       <-----------------AG <------MYB46(1)                                                                       ----------------->AGL1      <-                                                                       <-----------------AGL3    <---                                                                      <---------DOF5.7(2)   <------MYB83                                     <------MYB46(1)                 <---------ARR14(2)     <--------                                     <------MYB83                   ----------->HVH21     <---------WOX13(1)               <---------ATHB12   <---------ANAC46                  --------->DOF5.7(2)  <---------ARR14(2)             --------->WOX13(1)   <---------ANAC58                 <-----------HVH21   --------->LBD16       <---------ANAC58           <---------ANAC58            <------ZmHOX2a(1)      <---------LBD16       <---------ANAC58   <---------At4g35610           --------->ALFIN1--------------->AGL15    <---    <----------DOF2<---------DAG2--------->ATHB12     <---------ANAC46--------->MYB52(1) --------->ARR14(2)   tctatactttcttgtcaatcaatttttgagcttattgcttggtttgatcagttttgatgtggaaggacgcgttaccggttttggtaacccggattggtta  2884700                                                               --------->ZAT2            <------NtERF2                                      <---------ZAT2            <---------At4g35610                              <---------ALFIN1            --------->At4g35610                            <---------ALFIN1         <---------At4g35610                               ----------->RAV1(1)         <------NtERF2                                --------->At4g35610         <---------TOE2(3)       --------->ANAC46                <---------CCA1(2) ------>NtERF2         <---------YAB1   <---------ALFIN1                    <---------At4g35610<------NtERF2        --------->ICU4 <------ -----ZmHOX2a(1)                    <-------TEIL     --------->ALFIN1       ----------------->AGL1 ------TOE2(3)          <---------At4g35610        <---------ZAT2           <---------YAB1    <------ -MYB46(3)  <---------ZAT2    <---------MYB52(1)   --------->ZAT2<----------DOF2  <---------YAB1 ------TOE1(3)          --------->At4g35610       --------->GLK1(2)       <-----------GT1     <------   aggacacactcggcagctacttctacagctccagtagtttcatctctcttagaagctggtgccacagctttgggtattaccattatggatgaaatggctt  2884800                                                                                                  <--                                                                                                  ---                                                             --------->MYB52(1)                   <--                                                     --------->CCA1(2)                            <--                                                     <---------GLK1(1)                            <--   <-------TEIL                                     <---------ARR14(2)                          <---- ---ANAC58                                          --------->ARR14(2)                       -------- ---ANAC58      <----------DOF2  <-------TEIL       <---------ARR11(3)             <---------YAB1 <-- ---ANAC46<-----------GT1    <------ZmHOX2a(1)     <------ZmHOX2a(1)     <<<<<<<ZML2         <-------   acaggttcaatttcacatcttttctggtttaggagttcatgttttaagaaacaggatatgtcataacagaggctagaactaaaatatgactaggtttgtt  2884900  Previous    Next  AGI:  At1g08970.1    Description:  HAP5C (HEME ACTIVATED PROTEIN 5C); DNA binding / transcription factor. Identical to Nuclear transcription factor Y subunit C-9 (NFYC9) [Arabidopsis Thaliana] (GB:Q8L4B2;GB:O04033;GB:Q9SNZ0); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT1G54830.2); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT1G54830.1); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT1G54830.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN61083.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal h Range:  from: 2882527    to: 2884014    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g08980.1    Description:  ATAMI1 (AMIDASE-LIKE PROTEIN 1); amidase. similar to ATTOC64-III (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-III), binding / carbon-nitrogen ligase, with glutamine as amido-N-donor [Arabidopsis thaliana] (TAIR:AT3G17970.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77023.1); contains InterPro domain Amidase signature enzyme; (InterPro:IPR000120) Range:  from: 2884414    to: 2886623    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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