Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <------MYB83                                                                           <---------MYB46(3)                                                                           <------MYB46(1)                                                              <---------AHL20(2)                                                          --------->AHL20(2)                                                          <---------AHL20(2)    ----------->GT1                                    --------->ANAC55(2)<---------ICU4   <-------GAMYB              <---------AHL20(2)    <---------ANAC58  --------->ICU4   <-----------RAV1(1)              --------->AHL20(2)    <---------ANAC58 <---------AHL20(1)--------->MYB55(2)            --------->AHL20(2)      <---------ANAC46 <---------AHL20(2)--------->MYB111(2)     --------->ZAT6        <----------DOF2          --------->YAB1     <---------MYB46(3) ---------KAN4(2)     <----------DOF2              <---------YAB1      --------->MYB52(2)   agaatgaccactaaatttatatcgctatactttgttttgcgtattgaaagtttataatatttatttcatttgtttgttggttttgttaaataccgagttt  2879200                                                                         --------->AHL20(2)                                                                         <---------AHL20(2)                                                                    --------->AHL20(2)                                                                    <---------AHL20(2)                                                                    <---------AHL20(1)                                                                    --------->AHL20(1)              -                     <-----------GT1                             <---------AHL20(2)       -----------            <------------CBF                               <---------ANAC46   --------->AHL20(2)   --        <------ZmHOX2a(2)      --------->GLK1(1)      <------------CBF  --------->YAB1 --------->CCA1(2)       <---------ARR11(3)      <---------GLK1(1)   >>>>>>>>>>>>>>>>>LFY<---------YAB1 --------->ARR11(3)   gttatccaagatcgaattgaaattcacatttggatatcggtttattctggtttacccattggtgtataaatttattaaaatttaagatgatatggtaaac  2879300                    xxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxx>smallRNA(fl3)                 xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                 <---------ZAT6                 xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <------MYB46(1)          xxxxxxxxxxxxxxxxx>smallRNA(si3)          <------MYB83<---------YAB1         <---------AtMYB61         --------->MYB59<---------GLK1(2)        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------MYB55(1)       xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <---------MYB52(1)       xxxxxxxxxxxxxxxx>smallRNA(i)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <-------GAMYBxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxx>smallRNA(se3)    xxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <----------DOF2 ----------->ARR10 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxx>smallRNA(le3)      *TSSxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(s)    --------->ALFIN1      xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      --------->ANAC58      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC58       --------->ANAC46      xxxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------LBD16      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ANAC58          <---------HSFB2a(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(le3)<----------DOF2      xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->PCF5 --------->HSFB2a(2)  --------->TOE2(3)      xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------GT1      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------DAG2      xxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58         xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58  xxxxxxxxxxxxxxxx>smallRNA(s) <---------YAB1     <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<---------AHL20(1)     <---------ANAC46xxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------YAB1 -------->DAG2   xxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<---------AHL20(2) >GT1<---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(se3)--------->LBD16  --------->ANAC58   --------->ICU4 -------->DOF2 xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) --------->LBD16  --------->SPL7<---------TOE2(3)  -   aaaaagggcgtttggtctagtggtatgattctcgcttagggtgcgagaggtcccgagttcaattctcggaacgcccctttataaacgttattatttttaa  2879400                           <-----------ARR10                           ------->TEIL                           --------->ARR14(2)                           <---------ARR11(1)                        <---------bZIP60(2)                        <---------ANAC58                                          --------->AHL20(1)                        <---------ANAC58                                          <---------AHL20(1)                        <---------ANAC46                                          <---------AHL20(2)                        <---------ANAC55(1)                                       --------->AHL20(2)                        --------->ANAC55(2)                                     <---------YAB1                        <---------ANAC55(2)                                  --------->ICU4                       ----------->STF1                   ---------->DOF2    <---------YAB1               <---------ANAC46                     <---------ICU4          --------->TOE2(3)               <---------ANAC58                     --------->YAB1         <---------ICU4               <---------ANAC58                     --------->ATHB12       --------->YAB1          <---------ARR14(2)                        -------->HAHB4        --------->ICU4          --------->ARR14(2)  <----------DOF2      <---------ATHB12<---------ANAC58               ---          <---------GLK1(2)<---------ARR14(2)      --------->ICU4  <---------ANAC46              <---      --------->At4g35610 <---------ARR14(1)       <---------YAB1  <---------ANAC58   <-----------GT1      <---------At4g35610 <---------CCA1(2)    <------ZmHOX2a(1)<---------GLK1(1)<---------AHL20(2) -------->GLK1(2)    ----------->TGA1        <---------TOE2(3)  --------->GLK1(1)--------->AHL20(2)   aaattctgagcagattagcgtaaatgacgtatctttgtcttgaaaatgaggaaatgattacaaaggaattcgtgtaaacattattaaattaccaagttta  2879500                                                                               ------>ZmHOX2a(2)                                                                              <---------GLK1(1)                                                                              --------->GLK1(1)                                                                              <------ZmHOX2a(2)                                                                             <---------AGP1                                                                             --------->AGP1                                                                             <---------ARR14(2)                                                                             --------->ARR11(3)                                                                             <---------ARR11(3)                                                                             --------->ARR14(2)                                                                            <---------CCA1(2)                                                                     ------------>CBF                                                      <---------AHL20(2)    --------->At4g35610                                                 <----------DOF2--------->TOE1(2)       <---------ATHB12                          <---------DAG2 --------->TOE2(2) ------>YAB1                             ---------->DOF2<---------YAB1    --------->YAB1            < ------YAB1   <---------WOX13(1)   ----------->GT1   <---------AHL20(2)--------->WOX13(1)           -   tgaaaatcaatgactaattgacttattttggttcacattgaaaaaaagaaacttttttatttttaacatgggacaatcagatctctcagcgatactcaaa  2879600                                                                                                  ---                                                                                                <----                                                                                                <----                                                                                                <----                                                                                      --------->GLK1(2)                                                                                      --------->ARR14(2)                                  --------->GLK1(1)                                   <---------ARR14(2)                                  <---------GLK1(1)                                   ------->TEIL---                             --------->At4g35610                                  --------->TOE2(3)                           <---------GLK1(2)                            <---------GLK1(2)       <----          --------->ZAT6  --------->At4g35610                           --------->ARR11(3) <---------AtLEC2        --------->YAB1    <---------At4g35610                     <---------MYB46(3) <---------GLK1(2) ---------At4g35610     <-----------RAV1(2)                     <-------GAMYB     --------->TOE1(3) -------->At4g35610   --------->GLK1(2)      *TSS              <---------MYB46(3)----------->RAV1(2)   tcagatgctataacagtatcagcgaatcagatgctgaaatctctaaaactaaaaacttggtttggctgttgttagattttgaaacctgaatctgaatggc  2879700                                                                                                  <--                                 --------->ZAT2                                                   <--     --------->ATHB12            --------->At4g35610                                     <---------ALFIN1 ------>ANAC58                   <---------ZAT2                                          --------->AtMYB61 -----ANAC46       --------->MYB46(3)          --------->TOE2(3)                      ------->GAMYB -----ANAC58     --------------->AGL15         --------->TOE1(3)                      --------->AtMYB61 -----AtLEC2     <---------------AGL15        --------->ZAT6                         <---------MYB55(2) ------>ANAC58  <-----------------AGL3      <-----------GT1                 ------>ZmHOX2a(1)  <----- -----ANAC58<<<<<<<<<TBF1        <---------At4g35610 <-----------GT1  <<<<<<<<<TBF1  --------->MYB46(3)   atggaattgatttcttcttcaacaattggaaactcagctctgtgtttaaccctaatctccattctcatcttcttcttcctcactacaaccaccattccca  2879800       <------ZmHOX2a(2)                                                                            -       =============HOX2a_HOX2a                                                                    --      <-----------ARR10                                                                           <--      --------->ARR14(2)                                                                         <---      <---------ARR14(2)                                                                         <---    --------->LBD16                                                                         ------>ZmHOX2a(1)   --------->ANAC46                                                         <---------ARR14(2)<------   --------->LBD16                                               --------->TOE2(3)          =========  <---------LBD16                                               ----------->GT1 =====================  --------->HSFB2a(2)                      <---------ICU4       --------->YAB1  ===================== --------DOF2              --------->HSFB2a(2)           --------->At4g35610--------->ARR14(2)------- -------DAG2               <---------HSFB2a(2)      --------->ZAT6<---------MYB52(1)        ========= ----ALFIN1  ------>ZmHOX2a(1)            <---------ATHB12     <---------ATHB12 ------>ZmHOX2a(1)----   ctttcccggatcatcctcttcgttctcttctcgatgactcccaaatcactacgaacagtagctcaatcgttaatcccaaatcctcttgtgtctcctctag  2879900              --------->ATERF1(1)              --------->RAP2.3(1)              <------NtERF2              --------->RRTF1(1)             ------>NtERF2             <---------ATERF1(1)             <---------ERF1             <---------RAP2.6(1)             <---------ORA47(2)            <---------RAP2.3(2)            <---------RRTF1(2)            <---------DREB2C(2)            <---------RAP2.6(2)            <---------RRTF1(3)            <---------DEAR3(1)            <---------RAP2.3(3)            <---------ANAC46       <---------ICU4   --------->ANAC58   --------->ANAC58   --------->ANAC46  <---------TOE1(2) -------->TOE1(2) ---->ZmHOX2a(2)<-----------TGA1 ----ZmHOX2a(2)<---------ANAC46 ------ARR14(2)--------->bZIP60(2) ------ARR11(3)<---------bZIP60(1) ---HSFB2a(2)<---------RAP2.3(1) ====HOX2a_HOX2a<-----------HVH21                      ------->GAMYB ====HOX2a_HOX2a------>NtERF2                 ------->TEIL =====HOX2a_HOX2a--------->TGA2(2)            --------->ARR14(2) -->HSFB2a(2)<---------RRTF1(1)               <---------ARR14(2)          <------ZmHOX2a(2) =====HOX2a_HOX2a<------NtERF2<-----------GT1 <---------ARR11(3)      <---------HSFB2a(2)          << ----->ARR14(2)--------->bZIP60(1)           <---------CCA1(2)        --------->HSFB2a(2)   <--------   atcccacgataatggcggcgtcatcaactatttctccctccattactgtatcttcaacgaaaacctattcttctcgatcccaatattgtctcttctcatt  2880000                                                                                                    -                                                                                                <----                                                                                                -----                                                           --------->ZAT2                       <----                                                <-----------TGA1                                -----                                                <-----------HVH21    ------>ZmHOX2a(2)          <----                                               --------->ANAC46     <------ZmHOX2a(2)         <------                           --------->At4g35610 --------->DREB2C(2) <---------ARR14(2)    --------->YAB1      <---------DAG2   <-----------GT1         --------->DEAR3(1)  --------->ARR14(2)   <---------ATHB12 <<<<<<<TBF1     <---------ICU4             <---------ALFIN1     --------->DEAR3(1)    --------->ANAC58 -YAB1<----------DOF2---------->DOF2  <---------CCA1(2) ---------->DOF2                --------->ANAC58   cttcttcacttttacatactcattaaaaccgctcagactcatttctccaccgtcactacaaagctcgccgatcgtctcaatctctctccaagcatggctg  2880100  Previous    Next  AGI:  At1g08940.1    Description:  phosphoglycerate/bisphosphoglycerate mutase family protein. similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT3G05170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68574.1); contains InterPro domain Phosphoglycerate mutase (InterPro:IPR013078) Range:  from: 2877695    to: 2879172    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g08950.1    Description:  pre-tRNA. tRNA-Pro (anticodon: AGG) Range:  from: 2879306    to: 2879377    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g08960.1    Description:  CAX11 (cation exchanger 11); cation:cation antiporter. similar to CAX7 (CALCIUM EXCHANGER 7), calcium:sodium antiporter/ cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT5G17860.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61084.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) Range:  from: 2879645    to: 2882234    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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