Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   ---->YAB1                                                                                  <-------- ----ATHB12                                                                      --------->ANAC55(2) ->WOX13(1)         ---------->DOF2--------->ANAC46                     --------->YAB1 <-----------GT1 ->YAB1 <----------DOF2          <-----------GT1              <---------TOE2(3)  <---------ANAC55(2)- >MYB46(3) --------->YAB1      <----------DOF2            <----------DOF2   --------->ANAC46---------   actaggccaactttcataaatccaaagttgattctttactccacaatgccagacattgttcttttatgttacatttataagtcatgtattatccgatttg  2852100                                                   <---------AHL20(2)        --------->CCA1(2)            --------->AHL20(2)                               ---------------       <---------ARR14(2)            <---------AHL20(2)    --------->ETT(2)   <---------ICU4       --------->ARR14(2)   <-----------GT1       <---------AHL20(1)          --------->YAB1  --------->ALFIN1      <---------AHL20(2)        <---------AHL20(2)       --------->YAB1------->TEIL --------->ALFIN1       --------->AHL20(2)        <---------ARR11(3)      --------->KAN4(1)      <--- -ARR14(2)    --------->GLK1(1)  <---------YAB1   --------->AHL20(1)     <---------KAN4(2)   -------- -------->ALFIN1   --------->LBD16--------->YAB1  --------->AHL20(2)    --------->YAB1<-------------- >ARR14(2)    <---------GLK1(1)<----------DOF2    --------->ARR11(3)---------->DOF2<-----------GT1  <   gaggggggggatatggatttccgaatttttttactttgataaattttgtcaatatattttgttgacagaaaaaagaataatcaatatactgtatgtggta  2852200                                                                                                <----                                      ------->TEIL<-----------GT1      ------->TEIL          --------                                   --------->ANAC55(2)              <---------ANAC55(2)      -------- >AGL15   <---------ARR11(3)       <---------ANAC55(2) <---------CCA1(2)           --------->AHL20(2) ------YAB1                       --------------->AtSPL8            --------->ANAC55(2)      -------- --->GT1  <---------AHL20(1)      <---------------AtSPL3           --------------->AtSPL8  <---------ALFIN1 -AGL15   --------->AHL20(1) <---------YAB1    --------->YAB1 <---------YAB1----------->GT1--------->ANAC46 ---------YAB1   <-----------GT1  <---------------AtSPL8  --------->YAB1 <----------DOF2 <-----------GT1   ttattctaacaatattttttaaacgtataatatgattatgtaccaatatttataaccatatcatatgattatgtacttttgtaaaaaaaattcacacccc  2852300                          ------>ZmHOX2a(2)                        <---------ARR14(2)                        --------->ARR14(2)                        <---------ARR11(3)                                       ---------->DOF2        ----------->GT1 --------->ARR11(3)                                      --------->AHL20(2) -----ALFIN1            <---------AGP1                                          <---------AHL20(2) ->ANAC46              <---------CCA1(2)                                    <---------AHL20(2) ->ANAC58         --------->ATHB12                                          --------->AHL20(2) ->ANAC58     --------------->AGL15                                        --------->AHL20(2)    ----   acttaaaacttggttactactaattggatcttgcaactcaattttctaaatcgcattacaaaatactgaatgagcaaattaataaaagattagtcaaatg  2852400          <---------ATHB12                               *TSS     ---------->DOF2      ------------>CBF                                  --------->YAB1---------->DOF2  ---------->DOF2    ------->GAMYB                                       <------ZmHOX2a(1)          --------->At4g35610   <---------MYB52(2)                                 <---------TOE2(3)           --------->GLK1(2)   --------->MYB46(3)                                 <---------TOE1(3)          <---------GLK1(2) ------->HVH21             ---------->DOF2     ---------->DOF2 ------------------------>ANAC81   tgacaacgaccaatgaggcatggccaaataaaagcttgaagagactattcaaagttaaggataagaatcaaagaaagaagatggaatctgaaagactcga  2852500                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                     ------>ZmHOX2a(1)                                                                                     ================                                                                                     ================                                                                                   --------->HSFC1(2)                                                                                   <---------HSFC1(2)                                                                                   --------->HSFB2a(1)                                                                                   ------>ZmHOX2a(2)                                                                         <-----------HVH21      <----                                                                        <-----------RAV1(1)     <----                            <---------HSFB2a(1)                       <-------GAMYB<---------HSFB2a(1)                            --------->HSFC1(2)                        ===============================                            <---------HSFC1(2)                       <---------MYB46(3)   <---------MYB52(1)                       >>>>>>>>>TBF1                           <---------ARR14(2) <------ZmHOX2a(2)              --------->ANAC58                                 --------->ARR14(2)--------->ARR14(2)              --------->ANAC58                              <---------ALFIN1     <---------ARR11(3)              --------->ANAC46                             <---------At4g35610   <---------ARR14(2) -      --------->At4g35610   --------->HSFB2a(1)            --------->At4g35610<---------TOE1(2) <----   atcacatcttctgaataagcaagaagaagaagcttcttccttcacttctggtcttcttctcagcacatccgtcgttgtcgctggatccttctgttatggc  2852600          ------>ZmHOX2a(2)         --------->GLK1(1)         <---------GLK1(1)         <------ZmHOX2a(2)        <---------ARR11(3)        --------->ARR11(3)    <---------MYB52(1)   <-----------HVH21   --------->LBD16  <---------O2  --------->TGA1a  --------->O2  <---------TGA1a  ==========================bZIP_DOF  <---------ANAC46 <------NtERF2 ----NtERF2 ------>ATERF1(1) -------ABI4(2) ------RRTF1(1) ------ATERF1(1) ------ERF1 ------RAP2.3(1) -----RRTF1(3) ===============HOX2a_HOX2a                                                    <---------ANAC46 ================HOX2a_HOX2a                                                   <---------ANAC58 -----DEAR3(1)                                                                 <---------ANAC58 -----RAP2.3(3)                                                        <---------ICU4 ===========MYC_MYB                      <---------ATHB12           --------->YAB1                --- ----->NtERF2                  <-----------GT1        <-----------GT1 ------>ZmHOX2a(1)     --------- -----RAP2.3(2)  <----------DOF2     --------->MYB46(3)           --------->GLK1(2)        <---------YAB1   tgcgccgtgagatctcttcctttctctctcaatttgctatccactgattttggatattacagttttagaatcctaatttcttcgtgcataattttcataa  2852700                                                                                       --------->TGA1a                                                                                       --------->O2                                 <---------At4g35610                         <---------REM1(1)                                 --------->At4g35610                 <-------GAMYB     <---------ZAT2                                 --------->ZAT2                      ============================MYC_MYB                                 <---------ZAT2                     <---------ANAC58   ----------->RAV1(2)                              ----------->RAV1(2)                   <---------ANAC58   --------->ZAT2                              <------NtERF2                     =================================bZIP_DOF                              --------->ATERF1(1)               <----------DOF2        <---------O2                             ------>NtERF2                     <---------HSFB2a(1)     <---------TGA1a                             <---------ATERF1(1)               --------->HSFB2a(1)   <---------ALFIN1                      <---------ARR14(2)               --------->ARR14(2)   <-----------ARR10 ------>YAB1          --------->ARR14(2)               <---------ARR14(2)  --------->At4g35610 >YAB1  <----------DOF2   <-----------HVH21            --------->ARR11(3)  <---------At4g35610     --   ctataacatactttgtagatgtcatattcgtcgcctgctcagtccaaaatcatggaagaactgggactttccgttgcagatgtaagcccacctgtgttca  2852800                                                                      -------->P                        <---------AHL20(2)                          ----------->HVH21                    <---------ICU4                       <-----------GT1 <-------TEIL     <---------ARR11(3)                    ---------->DOF2         <---------AtLEC2 ------->YAB1<------ZmHOX2a(2)<----------DOF2          <---------ATHB12 <---------LBD16        <-----   atgttcatcatatagatcaaaatcatttttttcttttaagactctcaaaccggttcaataaaccagaccagtaacccggtttgaatggtctacttctatg  2852900                                                                                              -------                                                                                              -------                                                                                              -------                                                                                            <--------                                                                                            =========                                                                                         ----------->HVH21                                                                                         --------->ETT(2)                                                    <---------ANAC46               <------MYB46(1)                                                  ------>NtERF2           --------->ZAT14<---------ETT(2)                                                 --------->DEAR3(1)       <---------At4g35610 -------                                               <---------At5g28300   --------->RVE1(1)  <------NtERF2                                           --------->YAB1           --------->ARR11(3)<---------DEAR3(1)                                           <---------ICU4           <---------ARR11(3)<---------MYB46(3)                                           --------->ATHB12    --------->At5g28300 <------MYB83                                          --------->ICU4      ----------->GT1      <---------MYB46(3)      <---------ARR14(2)                  <---------YAB1    --------->At4g35610   <---------AtMYB61      --------->ARR14(2)               <------ZmHOX2a(1)    <---------At4g35610  <---------MYB52(1)-- ------RAV1(1)<-----------GT1       <------ZmHOX2a(1)  --------->REM1(2)  --------->At4g35610 <------   ttggccagtattcgtttttcacttcggtaatgacattaggaggaatgattaccgccgtgttcagcggtaaaatctctgctctcgttggtcgtcgacaggt  2853000  Previous    Next  AGI:  At1g08890.1    Description:  sugar transporter family protein. Identical to Sugar transporter ERD6-like 1 (SUGTL4) [Arabidopsis Thaliana] (GB:Q9SCW7;GB:O04041); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08900.2); similar to carbohydrate transmembrane transporter [Arabidopsis thaliana] (TAIR:AT1G08900.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08900.3); similar to unnamed protein product [Vitis vinifera] (GB:CAO68582.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Sugar transporter, conserved site; Range:  from: 2848351    to: 2852273    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g08900.1    Description:  carbohydrate transmembrane transporter. Identical to Sugar transporter ERD6-like 2 (SUGTL3) [Arabidopsis Thaliana] (GB:Q4F7G0;GB:O04040;GB:Q94F32;GB:Q9SCW8); similar to sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT1G08890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68582.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Sugar transporter, conserved site; (InterPro:IPR005829); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196); contains InterPr Range:  from: 2852457    to: 2855782    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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