Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              ----------->GT1             --------->CCA1(2)                            <------MYB83         ------->TEIL            --------------->AGL15             --------->ANAC58         <-----------GT1    <------MYB46(1)   --------->ANAC58      <----------DOF2   --------->STY1(2)   <---------ANAC58      --------->TOE2(3) <---------STY1(2)   <---------ANAC58    <---------YAB1  <---------STY1(2)      <-------TEIL--------->ARR14(2)                   ---------   --------->ARR11(3)   <---------ZAT2  --------->At4g35610                                 <--------   <---------ARR11(3)   --------->ZAT2  --------->GLK1(1)      <---------ARR14(2)    --------->WOX13(1) <---------MYB52(1) --------->STY1(2) <------ZmHOX2a(1)<---------ARR14(2) --------->ZAT6 ---------->DOF2   tccattatctttaacctcttgtagctagctaggttaattaggagatgcatgcatctagataggcatatatagtctaacattacaaatccatcaaaggttc  2826700                                                                                    <---------AHL20(2)                                                                   <---------YAB1  --------->AHL20(2)                                                          <---------AHL20(2)      <---------YAB1                                                        <---------AHL20(2)     <---------AHL20(2)                                                        --------->AHL20(2)     --------->AHL20(2)                                                      --------->AHL20(2)    --------->AHL20(2)                                                     --------->AHL20(1)     <---------AHL20(1)    <--                                                     <---------AHL20(1)     <---------AHL20(2)    <--   <<<<<<<<<TBF1        <-------TEIL                --------->AHL20(2)     --------->AHL20(2)    ---- >HSFB2a(1)          --------->At4g35610      --------->YAB1<---------AHL20(2) <---------YAB1    <--- -HSFB2a(1)---------->DOF2               <---------GLK1(2)--------->AHL20(2)--------->AHL20(1)  -----   ccttcttcttctccaaagaaattagctacatacaaatttgacagactctcataaatatatatatatatgtttatagattatattattaaaaatacaaatg  2826800                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                                                                     --------->ANAC55(1)                                                                                     --------->ANAC55(2)                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                              --------->ANAC46                                                                          --------->YAB1                                                --------->ATHB51         <---------YAB1                                               <---------AHL20(2)       ----------------------->TaNAC69(2)                                             --------->YAB1            --------->YAB1--------->ANAC46  <-----------GT1                           --------->AHL20(2)         <---------ICU4<---------ANAC55(2) -------RVE1(1)                             <---------AHL20(2)        --------->ICU4<-------TEIL -------CCA1(1)                 <---------ARR11(3)                    --------->AHL20(2) ----->ARR11(3)  <---------YAB1 --------->ARR11(3)                    <---------AHL20(2) ------ARR11(3) --------->AHL20(2) <---------AHL20(2)    --------->MYB52(1) <-----------GT1 <-------- ---->YAB1  ----------->GT1   <---------TOE2(3)<---------YAB1         <---------ATHB51      ---------   atattttctgtattttgttaaaattagttcttaagattttatgaaatttataattgagccaacgtcttagaaataattatacgacatacgtaatttaaat  2826900                                           --------->YAB1   --------->ZAT2         ---------->DOF2  --------->YAB1            --------->ZAT6 --------->AHL20(2)                      ================== <---------ATHB12          <---------At5g28300    <-----------GT1    ----------->GT1 ----------->TGA1         <-----------GT1 <---------ATHB12  --------->At4g35610  <------ZmHOX2a(1) -AHL20(2)          <---------TOE2(3)   --------->WOX13(1)  <---------At4g35610<---------TOE2(3) >AHL20(2)      --------->TOE2(3)   <-----------GT1    --------->bZIP60(2)   --------->TOE1(2)      <   tcaatgacgatgacttaaacttaatgttttacagtatttatccaatcaaattttaccacatcagcagagaagagtcaaacttaggaaaagtctatcttgg  2827000                                                          ------>MYB46(1)                                                          ------>MYB83                                                          -------->P                                                         --------->MYB55(1)                                                        <---------MYB111(1)                                                        --------->MYB46(3)                                                   <---------ANAC55(2)                                                   --------->ANAC58             <----------DOF2                       <---------ANAC58            <---------ANAC46                       <---------ANAC58            <---------ANAC58                       --------->ANAC55(2)            <---------ANAC58                       --------->ANAC58       --------->bZIP60(1)                        --------->SPL7       <---------ANAC58                        --------->ANAC55(2)       >>>>>>>>>>AtbZIP1                       --------->ANAC58       <---------bZIP60(1)                     --------->ANAC58       <---------TGA1a                         <---------ANAC55(2)       <---------bZIP60(2)                    --------------->AtSPL3       =================bZIP_DOF              <---------------AtSPL3       <---------ANAC58            <---------AHL20(2)   <---------MYB59       <---------O2               --------->AHL20(2)    <---------MYB111(2)       <---------ANAC46           <---------AHL20(2)    <---------MYB46(2)       --------->O2            <---------AHL20(1) ------->TEIL       --------->TGA1a         <---------AHL20(2) --------------->AtSPL3                        <----     <---------TGA2(2)         --------->AHL20(2) <-------TEIL   <----------DOF2               ------    ----------->HVH21          --------->AHL20(1) <---------TOE1(2)                            ------    ------>ZmHOX2a(1)         --------->AHL20(2)<---------SPL7  *TSS              <----------DOF2   -    ----------->TGA1     --------->ANAC58     <---------------AtSPL8          --------->ZAT18  ------  ----------->RAV1(2)--------->ANAC58  --------->YAB1 ------->TEIL         <---------O2        <----- ================bZIP_DOF--------->ANAC58   <---------ATHB12   <---------ZAT2 <---------ZAT18  ------ -----------GT1      --------->ANAC58<---------TOE2(3)<-----------ARR10    --------->O2        ------   attatcctgacgtggcttttttcaagtaagaaataaattaatgctaatcacgtacgtacctacccagcttttggacctcgtgggctatatagaaaacaag  2827100         --------->CCA1(2)        <----------ID1  ---------->DOF2 -----MYB52(2) --->ANAC55(2) --->ANAC55(1)                                                                         ------>ZmHOX2a(1) -------->MYB46(3)                                        --------->ANAC58             --------->LBD16 --->ANAC58                                               --------->ANAC58        --------->GLK1(1) < ----ANAC55(2)                                       <---------At4g35610          <---------GLK1(1) < --->ANAC46   --------->ANAC58                       --------->At4g35610   ---------->DOF2    <------ --->ANAC58   --------->ANAC58 ----------->GT1  <---------YAB1    <---------GLK1(2)  ----------->RAV1(2)   taaccaaagagagacgaagcaaaaacattcagagagaaaattcagcatttttgatagctcaagcacttgattctttccaaaggggtttcctgaggtatgt  2827200                                                                                    --------->At4g35610      <---------DAG2                                                              <---------ZAT14      <----------DOF2                                                <---------ANAC58 <----------DOF2                                                     <---------ANAC58            <--- ---------ANAC58               --------->TOE2(3)      <---------GLK1(2)         <---------DEAR3(1) ---------ANAC58            <---------CCA1(2)    <----------DOF2  <---------GLK1(2) <---------At4g35610 ---YAB1        <---------AHL20(2)      <---------GLK1(2)--------->TOE2(3)  ------>ZmHOX2a(1)    <---   ttgctttcctttttggttttaatttgtttcaaatcttagatcgattcttcactttggattcttaaatcgattcttgtcctcgtctgtgctgatttcgaac  2827300                                                                         ------>ZmHOX2a(2)                                  ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                                 ===============HOX2a_HOX2a            --------->ARR14(2)                         <---------ANAC46                              <---------ARR14(2)                      --------->TOE2(2)                                <-----------ARR10                    --------->GLK1(2)                                  <---------ARR11(3)                    <-----------ARR10                                  --------->ARR11(3)                    --------->ARR14(2)                                 <---------AGP1                    ------->TEIL <------ZmHOX2a(2)                     <---------ARR11(1)                    <---------ARR11(1)   ===============================HOX2a_HOX2a                    <---------ARR14(2)   <------ZmHOX2a(1)            <---------ARR14(1)                   <---------ARR14(1)  <---------TOE2(3)              <------NtERF2                 --------->DEAR3(1)<----------DOF2                    <---------CCA1(2)          ----               --------->LBD16  <---------AGP1                   ------>ZmHOX2a(2)      <---------ANAC58               --------->At4g35610==============HOX2a_HOX2a      <---------DEAR3(1)     <---------ANAC58               ------>NtERF2    --------->AGP1                --------->ATHB12          <---------ANAC46 -------DOF2  --------->DEAR3(1)<---------ARR11(3)           <---------YAB1    <---------GLK1(2) <--- ------DAG2  <---------LBD16    --------->ARR11(3)  <-----------GT1<---------LBD16  <----------DOF2   ttttccgattccaactccgccgaatctacgtatagatctttgaggaaatgtttttttcgatttatgatcggcggatctaccgattcctttgcttgttttc  2827400                                                                                <---------ARR14(2)                                                                                --------->GLK1(2)                                                                                --------->ARR11(3)                                  <----------DOF2                               <---------ARR11(3)                                 <---------DAG2                                 --------->ARR14(2)                               ---------->ID1                           ------>ZmHOX2a(2)                              <---------WRKY18(1)                     --------->ARR11(3)                             --------->WRKY12                         <---------ARR11(3)                             --------->WRKY38(1)                 <---------ANAC46                   <                             ----------->HVH21                   <---------ANAC58                 ---        <-----------GT1    <---------ANAC58                      <---------ANAC58                <---      ------->TEIL    <---------At4g35610                   <---------ICU4     --------->RVE1(1) ---- ----------------->WRI1    <---------ANAC58                <---------YAB1      <---------GLK1(1) <--- -------DOF2    --------->At4g35610        --------->ZAT18 --------->ICU4<-------GAMYB          <----   tttggatgtatcacactcttctgaagatgccttgacctttttatgtgaactagtaagagttattatggcttagatcgttgaatatctggtatatgtgttc  2827500                            --------->ANAC55(2)                            <---------ANAC58                            <---------ANAC58                            <---------ANAC55(2)                            <---------ANAC46                           <-------TEIL                          <---------ANAC46                        <---------ANAC58               ------>ZmHOX2a(2)                                                                  <--             --------->ARR11(3)                                                       <---------At4g35610             <---------ARR14(2)                                                       --------->At4g35610             --------->ARR14(2)                                                       <-------GAMYB <             <-----------ARR10                                                       <-----------RAV1(1) ---------YAB1<------ZmHOX2a(2)                                                      <---------MYB46(3) ------>YAB1 <---------ARR11(3)                                                <---------ANAC46  <--- ------------AGL15      <---------ANAC58            <---------TOE2(3)          <---------ANAC58  ---- ----------->AGL15     <-----------RAV1(1)    <---------TOE2(3)                <---------ANAC58  ---- ------YAB1 <------ZmHOX2a(1)     ---------->DOF2<---------WOX13(1)    --------->GLK1(2)         <--- -------------AGL3     <---------AtMYB61 --------->MYB52(2)           <---------GLK1(2)    <---------At4g35610   ttataatgggattaggatctatgttttggtgcgtattaaagcttagttgagattgatgtttttgggttttcaaattctgtttcttgtctgttgagctaat  2827600  Previous    Next  AGI:  At1g08830.1    Description:  CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1); copper, zinc superoxide dismutase. Identical to Superoxide dismutase [Cu-Zn] (SODCC) [Arabidopsis Thaliana] (GB:P24704;GB:Q9FRQ6); similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu-Zn superoxide dismutase [Thellungiella halophila] (GB:ABQ59346.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) Range:  from: 2827064    to: 2829318    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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