Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------LBD16       <---------HSFB2a(2)                           <---------CCA1(2)                             <-      ------>ZmHOX2a(2)       --------->At4g35610  <---------REM1(1)          <---------TOE1(3)  <---    --------->ARR11(3)   <---------ANAC58        <---------ANAC58             <---------TOE2(3)  <<<<    <---------ARR11(3)   <---------ANAC46        <---------ANAC58    <---------TOE1(3)          <---- >ANAC58                 <---------ANAC58        <---------ANAC46    <---------TOE2(3)     --------->ZAT2 >ANAC58              ------->TEIL            <----------DOF2   --------->ATHB12  <-----------HVH21<-   gctcgtgatctcggagaactgatgtatgcgtatgctgtaagtcttctcctttcgtgtagcttcaattgattagggtttttcaggtttcagagcaactggg  2724200                                                       <---------ANAC58                                               <---------TOE1(3)                                               <---------TOE2(3)                                               <---------YAB1                                             -------->HAHB4                                             <---------ICU4       --------->TOE1(2)                                             --------->YAB1  --------->LBD16                                            --------->ICU4  --------->HSFC1(1)       <---------ANAC58                     <---------ATHB51<---------HSFC1(1)   --------->GLK1(1)                     <---------------AGL15  --------->GLK1(2)   <---------GLK1(1)                     --------------->AGL15 <---------ARR14(2)  <---------ARR14(2)                     --------->AHL20(2) --------->HSFB2a(2)                    <-  --------->ARR14(2)  ----------------------->TaNAC69(2)    <---------HSFB2a(2)                 <---- -----MYB46(1)      ---------->ID1      ============================================================= -----P<---------ANAC58                 <-----------------AGL2 --------->ARR14(2)           --------- <<<<<MYB98     <----------DOF2         <-----------------AGL3 <---------GLK1(2)            <-------- ---GAMYB     <------NtERF2        --------->ANAC46    <---------ANAC58                     <-------- -----MYB83 <---------ZAT18      <-----------GT1     <-----------GT1              ------------>CBF --   ttgggatttgctggtccgctttgtcttctactgttttacacaactaattatggttttgccttccagaacctgcaaaattttggatgcaattctcgtctct  2724300      --------->ANAC58      --------->ANAC58    <---------DOF5.7(2)                                                                          <---   <---------WRKY12                                                                    <---------YAB1 --------TOE2(3)                                                                    --------->ICU4 ------DOF2                                                 <---------ARR11(3)    <---------MYB46(3) =========MADS_MADS                                   <----------DOF2          <---------ANAC58------ ->ID1--------->ANAC46                        <---------ANAC46  <---------YAB1 <---------ANAC58<----- -CCA1(2) <------------CBF                <---------GLK1(2) --------->ARR11(3)<-------TEIL<---------- ---------AG  <---------ANAC58        <------------CBF--------->TOE1(3)   --------->DAG2--------->AHL20(2) ------->MYB59<---------ANAC58     ------------>CBF   --------->TOE2(3)  ---------->DOF2<---------AHL20(2)   ttaggtaaacgctattgcttcttctcttattttctaagtcaattgattctgggtaactttaatatcatgcttaaataaagttcgtggttattaattgtcg  2724400                                                <---------RVE1(1)                                         <---------ANAC58                                   <---------YAB1                                  ------>ZmHOX2a(2)                                 <------ZmHOX2a(2)                                --------->ARR14(3)                                <-----------ARR10                                --------->ARR11(3)      --------->MYB52(1)  <---------ANAC58      --------->ZAT2            <---------ARR11(3)  <---------AHL20(2)      <---------ANAC46      <---------ZAT2            <---------ARR14(3) --------->AHL20(2)       <---------ANAC58      <---------At4g35610     ----------->ARR10--------->ARR11(3)          <-------TEIL ---NtERF2                   <---------TOE1(2) <---------ARR11(3)       <---------At4g35610 --->ETT(1)          <---------ANAC58    <---------ANAC58    <------------CBF                       < ----LBD16           <---------ANAC58<------------CBF  <-----------GT1  --------->At4g35610  <------- --CBF--------->At4g35610  <---------SPL7<---------ANAC46    <---------GLK1(2)  <----------DOF2     <   ggatttagagctgagtttagttgtcttgtcgtaagatcttattgtgtgagatattaaataccagattgtttcacagatgcgtctttttagttgtggtaag  2724500                          <------------CBF                         <---------ICU4                         --------->ATHB12                         --------->ATHB51                         -------->ATHB1                        <---------YAB1               <---------TOE1(3)              --------->MYB52(1)  <----------DOF2            <----------DOF2  <-----------GT1       --------->STY1(2)       --------->ALFIN1 --------->ICU4             <---------STY1(2) ---------LBD16<---------TOE2(3)  <---------DAG2  --------->ANAC58                                 -- -P<------ZmHOX2a(1) ------------>ATHB5           --------->ANAC58    --------->MYB52(1)----------->GT1 -----------RAV1(2)  <-----------------AGL3     <---------MYB52(2) <------NtERF2        <----------ID1   tctcaggaggtgtgcttaacgtttccattattgacactttttcagtagcaactagcaagtgaagatggaggcaaacgaagaaagtttgaagggaaaaatt  2724600                                                        --------->YAB1                                                       <---------YAB1                                                     --------->YAB1                      --------->MYB52(1)                                                    <---------YAB1                  <------ZmHOX2a(1)                                       <------ZmHOX2a(1)-------->HAHB4           <-----------RAV1(2)           ---------->DOF2       ---------->DOF2   --------->AHL20(2)      --------->At4g35610 -------->DOF2              ----------->GT1    ----------->GT1             <---------At4g35610     --   gaaaagctagagggaaaggaggttattgtggagtcaaaagaggatgagatggatataataatagaagaaaatagggaagcagaacaggaggtaatggagg  2724700                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                         --------->HSFC1(2)                                                                                  <-------TEIL<------                                                                               --------->GLK1(1)    -                                                                    ---------->DOF2      <---------HSFC1(2)                                                                --------->At4g35610    <---------ARR11(3)        --------->CCA1(2)                               --------->YAB1         --------->At4g35610  < --------->ANAC58     --------->At4g35610              <---------ATHB12      ======================== --------->ANAC58    ----------->GT1                 --------->WOX13(1)      ======================== -------->DOF2  --------->ALFIN1    --------->ICU4  --------->MYB46(3)       <------ZmHOX2a(1)-------   tgaaagcaagagatggaagaggggagcaaaatgatgtactgatggaagaaaacaacaatcagggtgagcaaaaagatgaggagatgcaagatgcttctag  2724800     ---------->DOF2   ----------->HVH21  ------>ZmHOX2a(2) --------->CCA1(2) <------ZmHOX2a(2)                                       <---------YAB1 ---------ARR14(2)                                  <---------ANAC46 -------->ARR11(3)                                  <---------ANAC58 ---------AGP1                                      <---------ANAC58  ------>ZmHOX2a(2) -------->ARR14(2)                                 <------NtERF2    <---------ARR14(2) ---HSFB2a(2)                                     --------->LBD16   --------->ARR11(3) -------->AGP1                                    ------>NtERF2     <---------ARR11(3)     --------->ARR11(3) ---------ARR11(3)                       --------->GLK1(2)          <---------AGP1        <---------GLK1(1) =======HOX2a_HOX2a                     <---------GLK1(2)--------->ICU4   <---------TOE2(3)<---------ARR11(3) ========HOX2a_HOX2a     <---------At4g35610    <---------LBD16     --------->ARR14(2)    --------->GLK1(1) -->HSFB2a(2)            --------->At4g35610 <-----------HVH21     <---------CCA1(2)      <---------CCA1(2)   tagatctgaaagttctgacttcaattcagatgaagatgaacaaattctgtcccggcgtgatgatgagttggatcttgaggtatgcatcatggatatctct  2724900                                                                                                    -                                                                                                    <                                                  <------------ATHB5                                -                                                  <---------ICU4                                    <                                                  -------->ATHB1                                    <                                                  --------->ATHB51                                  <             <------ZmHOX2a(1)                    --------->ATHB12                                  -          <------NtERF2                           <--------ATHB1                                    <         --------->LBD16                         <---------YAB1                                     -        <---------DEAR3(1)                       <---------ATHB51                          <---------AHL20(2)        <---------ANAC46                         --------->ICU4            ==========================       <---------LBD16                           <---------ATHB12          ==========================   <---------ANAC58                           ------------>ATHB5           <------ZmHOX2a(1)       <-   <---------ANAC58   ------->TEIL      <----------DOF2         --------->TOE2(3)       ----------->GT1   tgtttacttggcggaggaatagtgtatgtttatctaatatttcttttttcaattattgggcagaaacctttgagcgaggaagaaatagatgagttaattt  2725000           <---------At4g35610           <---------ZAT2           <-------GAMYB           --------->At4g35610          <---------MYB46(3)      <---------HSFB2a(2)      --------->HSFB2a(2)  ------>ZmHOX2a(2) <------ZmHOX2a(2) -------->ARR11(3) -----------ARR10 -------->ARR14(3) ---------ARR14(2) ---------GLK1(2) ---------ARR11(3)                                          <---------ARR14(2) -------->ARR14(2)                                          --------->ARR14(2) ---------ARR14(3)          <---------AHL20(2)       --------->GLK1(1)      <-----------HVH21 -------->AGP1         <---------ARR11(3)            <---------GLK1(1) <---------AHL20(2) ========HOX2a_HOX2a  ----------->GT1  <----------DOF2<---------ARR14(2)   <----------DOF2 =======HOX2a_HOX2a  --------->ANAC58 <---------ANAC58--------->GLK1(2)<-----------GT1              < --------CCA1(2)     --------->ANAC58 <---------ANAC58--------->ARR14(2)<-----------GT1         <----   cagatcttctggcagttgagagcaaggtatttaatctcttgcttttgttcaatggaaatctggataggcctatttaactttcaggtctaaatctcactct  2725100  Previous    Next  AGI:  At1g08600.1    Description:  ATRX/CHR20; ATP binding / DNA binding / helicase. similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G19210.1); similar to hypothetical protein OsJ_030527 [Oryza sativa (japonica cultivar-group)] (GB:EAZ16318.1); similar to SNF2 domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47753.2); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAK54297.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); con Range:  from: 2724565    to: 2733616    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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