Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->TOE2(3)                                     <-----------HVH21                                    --------->TGA1a                                    <---------TGA1a                                    ==============================bZIP_DOF                        <---------HSFB2a(2)         --------->YAB1                        --------->HSFB2a(2)        <---------ZAT6                       ----------------->AGL2 --------->CCA1(2)                      <------ZmHOX2a(2)      --------->ARR14(2)                     --------->ARR11(3)      --------->ARR11(3)                     --------->ARR14(2)      <---------ARR11(3)                     <---------ARR14(2)      <---------ARR14(2)                     --------->AGP1 <---------bZIP60(1)  <---------TOE2(3)                          -                    --------->GLK1(1)<-----------TGA1   --------->DAG2                              -                    --------->At4g35610<-----------RAV1(2)   <---------GLK1(1)                      <                 <---------At4g35610--------->bZIP60(1)---------->DOF2                 <-----------RAV1(1)            <---------ZAT6          --------->O2   --------------->AGL15               --------->ALFIN1        <------ZmHOX2a(1)           <---------O2   <---------------AGL15  <------ZmHOX2a(1)        <- --->GT1=====================HOX2a_HOX2a <---------At4g35610 --------->GLK1(1)     ---------->DOF2<--   aaaatatgcaggaagtgatagcagatccagaagcagtaacgtcagaagatatactgataaaggaattcatgaggcaggacttggacaaagtgttggactc  2706500    <-------TEIL <---------ANAC58 <------MYB46(1) <---------ANAC46                                                                              ------ <---------ANAC58                                                                              <----- <------MYB83                                                                       --------->ATHB12 -------->MYB55(2)                            <------ZmHOX2a(1)                    --------->ICU4 -------->MYB59                   --------->CCA1(2)                              <---------At4g35610 ---------MYB46(3)               <---------ARR14(2)                          <------ZmHOX2a(1) ------ --------MYB55(1)                --------->ARR14(2)                       --------->CCA1(2)    <----- -------MYB52(1)        <-------TEIL     --------->ALFIN1               --------->CCA1(2)    --------   gttgggtacaagggagaaacaagtgatacgttggagatttgggatggaggatgggagaatgaagacgttgcaagagataggagagatgatgggagtgagc  2706600                                                                                             --------                                                                                             <-------                                                                                           <---------ICU4                                                                                           --------->YAB1                                                                                 <---------ANAC58                                                                                 <---------ANAC58 --->At4g35610                           ---------->DOF2       --------------->AGL15      <---------ATHB12 ----ZAT2                          <------ZmHOX2a(1)          ----------------->AGL2      <<<<<<<<<ARR1 --->ZAT2                         --------->ANAC46           -------->P          <-------GAMYB<------ ----At4g35610          <---------At4g35610                --------->MYB46(3)   <---------MYB46(3) <- ->ZAT18                --------->At4g35610           ----------->GT1      --------->ICU4 <<<<<<<<<ARR2   agggagagagtaagacagatagagtcatctgcattcaggaaactaaagaacaagaagagaaacaaccatttgcagcaatacttggttgcacaatcataat  2706700                                           <---------O2                                           --------->TGA1a                                           --------->ZAT2                                           --------->O2                                           <---------ZAT2                                           <---------TGA1a                                           ----------->RAV1(2)                                           ========================================bZIP_DOF                                          --------->MYB52(1)                                          ------>MYB83                                          ------>MYB46(1)                                          -------->P                                         --------->MYB55(1)                                         <---------ALFIN1                                        --------->DEAR3(1)                                        --------->MYB46(3)                                        <---------MYB111(1)          <-----------GT1                                        <---------MYB55(2)          <---------YAB1                                        <---------MYB46(2)        <---------ICU4                                       --------->ANAC58           -------->ATHB1                                       <---------ALFIN1           --------->ATHB51                                       --------->ANAC46          <---------ATHB51                                       --------->ANAC58          <---------AHL20(2)       <---------ANAC58                                      ------>MYB83               --------->AHL20(2)       <---------ANAC58                                      ------>MYB46(1)       --------->At5g28300      <---------YAB1                                     <---------ALFIN1   --------->ANAC58            <---------TOE2(3) ->ICU4                             --------->MYB46(3)  --------->ANAC58<----------DOF2 --------->GLK1(2) --YAB1                            --------->DEAR3(2)   --------->ANAC46<---------DAG2 <---------GLK1(2) ---ICU4                    <---------AtLEC2     --------->YAB1  --------->ICU4    <-----------GT1 ---------DOF2          <---------ANAC46<---------MYB111(2)----------->GT1  <-----------GT1   -------   tctttttctcttcaatatggaatgttttgtgcatagaacccacccacctgagcataacaagcagtaaattattactttttagcatttacgattcttgtga  2706800                                                                                        --------->YAB1                      <---------AHL20(2)                                          <---------ARR11(3)                    <---------YAB1                                                --------->ARR11(3)                   --------->AHL20(1)                                            --------->RVE1(1)                  <---------AHL20(2)                                             --------->CCA1(1)                  --------->AHL20(2)                                         <---------AHL20(2)                 <---------AHL20(2)                                          --------->AHL20(2)    --              --------->ICU4                                              --------->AHL20(2)   ------              --------->AHL20(2)      <------------CBF                   --------->AHL20(2)--------->YAB1         ----------->GT1            --------->ARR11(3)                 --------->YAB1--------------->AGL15 ---->HVH21   <---------AHL20(2)---------->DOF2                      ------------>CBF<---------------AGL15   caactactaaatcgaaaaaattattttaaaactaaaaagaaattgttgtctgaaaaacataagtgatatacaacaataaataaatatctcttataagaat  2706900                                                ------->GAMYB                                                --------->RAP2.6(2)                                                --------->DEAR3(1)                           ========                                    ----------->GT1                                     <------ZmHOX2a(1)                                   --------->ALFIN1                             --------->ALFIN1                                 <---------ANAC58                      <---------MYB46(3)    <-------                           <---------CCA1(1)   --------->MYB46(3)     <---------ANAC46  --------->ATERF1(1)                           <---------RVE1(1)  -------->P        <---------AHL20(2)    --------->ALFIN1                           *TSS  <---------ANAC46               --------->AHL20(2)   <------ZmHOX2a(1)        --------->AHL20(2)--------->ARR11(3) --------->MYB52(1) --------->AHL20(1) --------->ALFIN1 --------->GT1            <---------ARR11(3)--------->MYB46(3) --------->AHL20(2) <------ZmHOX2a(1) --->GLK1(2)     <---------ATHB12<---------ANAC58      <------ZmHOX2a(1)       <------ZmHOX2a(1)  <--   ttgggaaaaaaaaaatccaaagattagagatatttgggtggagaaaacaaccgcctaggacaaaaaaaaattgtgggtagaggaggaggaggaggctttg  2707000                  <---------HSFB2a(1)                  <---------HSFC1(2)                  --------->KAN4(1)                  --------->HSFB2a(1)                  <---------KAN4(1)             --------->ANAC58             --------->ANAC58           --------->MYB52(1)          --------->ANAC58          --------->ANAC46          =========================================bZIP_DOF          ----------->HVH21          <---------TGA1a          --------->TGA1a          --------->ANAC58          --------->O2      <---------ALFIN1      --------->AtMYB61     --------->ANAC58     --------->ANAC58                                                           <---------ARR14(2)     --------->ANAC46                                                           --------->ARR14(2)   --------->ANAC46                                                           ------>NtERF2   --------->ANAC58                                               --------->ARR11(3)   --------->ANAC58--------->KAN4(2)      --------->ANAC58        <---------ARR11(3) --------->ANAC46 --------->HSFC1(2)      --------->ANAC58       --------->CCA1(1) <---------ALFIN1<---------KAN4(2)      ---------->DOF2    <---------ANAC58   --------->LBD16 ===================bZIP_DOF<---------ANAC58               <---------ANAC58 <---------LBD16 ---DOF2--------->ANAC46    <---------ANAC58      --------->YAB1 --------->RVE1(1) -------ZAT18--------->ANAC46--------->LBD16    <---------ARR11(3)--------->ARR14(2)   ttcacacaccacacgacggaacattctcttccgagtcttatccaaagcaaaatcatattttgcttaaatatcttcttctccggctctgtctctgtctctc  2707100            <----------DOF2                                                               --------->ANAC46        <------NtERF2                                                                     --------->ANAC58       --------->LBD16                                                        <-----------GT1      --------->ANAC46                                                <---------YAB1      --------->ANAC58      <----------CDC5      <------MYB83                     --------->GLK1(1) ---------->ID1     --------->LBD16       ----------->GT1                  --------->bZIP60(1)          ------->GAMYB     <---------LBD16       <------MYB46(1)            --------->ZAT6 <-----------GT1    <---------ALFIN1    --------->LBD16       --------->MYB59  <----------DOF2  <---------bZIP60(1)  <----------DOF2  <--   <---------LBD16        --------->MYB46(2)    --------->ZAT6 --------->YAB1<-----------GT1      ---   ttcttcccgcggagctttcagtttttgtttggtaacatcgtttctctttctcactaactctgatatcatattatcaatttttccttttcaacacccaaaa  2707200            <---------DAG2     <---------ANAC58          <---------At4g35610  <---------ANAC58          --------->At4g35610  <---------ANAC46  --------->GLK1(2)        <---------ANAC58 ---------GT1           <-----------GT1                                                            -- ------>YAB1<----------DOF2<---------ANAC58       <-------TEIL                              <--------   tcacaatctttcagctttattctgtttttccttgcttgagaattgtgttcgattcatgtctacgaactgaaatcacaaattttgccaacgttttatgatt  2707300           <---------AHL20(2)     --------->ANAC55(2)     <---------ANAC55(2)     <---------ANAC46                                                   --------->ATHB12     <---------ANAC58                                        --------->AHL20(2)     <---------ANAC55(1)                                     --------->AHL20(1)     <---------ANAC58             <---------At4g35610        <---------AHL20(2)  <---------ARR14(2)              --------->At4g35610       --------->AHL20(2)  --------->ARR14(2)             --------->MYB59  --------->YAB1       <---------YAB1 ---->ZmHOX2a(1)        --------->ICU4         --------->YAB1<---------YAB1       <---------LBD16 -YAB1--------->LBD16   <---------ATHB12     <---------KAN4(2)         --------->ICU4     ---------->DOF2   cctggttccgtatttttttttttgtaatcaatagttagctcatttcgaataatcaaactcaattttattgttcatgatttgttatctgggataaaagaga  2707400  Previous    Next  AGI:  At1g08540.1    Description:  SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGF (RNA POLYMERASE SIGMA-70 FACTOR), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G36990.1); similar to sigma factor 2 [Sinapis alba] (GB:CAB83106.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262); conta Range:  from: 2703339    to: 2706848    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g08550.1    Description:  NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1). Identical to Violaxanthin de-epoxidase, chloroplast precursor (VDE1) [Arabidopsis Thaliana] (GB:Q39249;GB:Q9SJD9); similar to violaxanthin de-epoxidase-related [Arabidopsis thaliana] (TAIR:AT2G21860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70809.1); contains InterPro domain Lipocalin; (InterPro:IPR002345); contains InterPro domain Violaxanthin de-epoxidase (InterPro:IPR010788); contains InterPro domain Calycin-like (InterPro:IPR011038); contains InterPro domain Calycin; (InterPro:IPR012674) Range:  from: 2706927    to: 2709534    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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