Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    -                                                                                                    <          --------->At4g35610                                                                    ----          <---------At4g35610                                                                    <---          ----------->RAV1(2)                      --------->TOE1(2)                             ----       <-------TEIL                              <---------TOE2(3)                            ------- -----MYB59                --------->AHL20(2)    ------->TEIL                     ---------->DOF2<--- --->STY1(2)      <----------DOF2         ------>ZmHOX2a(1)--------->YAB1       <--------------------   taactcaaattcatctgtagctttagcacttaaatagtgtattcctcgatgaacgttggaattatagaactcatagtaattctgcaaagcgtccaataca  2688200       <---------At4g35610     <---------ANAC58     <---------ANAC58                       --------->WRKY12   ------>NtERF2                            --------->WRKY38(1) -------->ZAT2                              --------->WRKY45 ---------At4g35610                         ----------->HVH21 -------->At4g35610               --------->ZAT18 ---------ZAT2                    --------->ZAT14 ----->ZAT2                       <---------ZAT18                                          <---------ANAC58 ------ZAT2                       <-------TEIL---------->ID1                               <---------ANAC58 ----->At4g35610      <---------ALFIN1 --------->ANAC58                          --------->YAB1 --->DOF2            <---------At4g35610  <----------DOF2                 --------->WOX13(1) ------At4g35610     <---------ZAT14   --------->ANAC58     ------>ZmHOX2a(1)    ----------->GT1 -WRI1 --------->At4g35610        <---------ZAT14           --------->LBD16 <---------ATHB12   gctgctggcttctgagaagttgcagcactgtctaagtacacaagctttgacccattcacttcctgaaataaaaactcaatcaatggtaaaattgcttaat  2688300                                                                         --------->HSFB2a(2)                                                                   --------->ARR11(3)                                                                  --------->GLK1(1)                                                ----------->RAV1(2)<---------ARR11(3)                                         <----------ID1           <---------GLK1(1)                <-                                         <---------ZAT18   <---------ARR14(2)                      --                                    ---------->DOF2        --------->GLK1(2)  --------->ANAC58     <-                      --------->WOX13(1) --------->ZAT18   --------->ARR14(2) --------->ANAC58-------                ---------->DOF2  <---------TOE2(3)   <---------ANAC46 <----------DOF2   <------NtERF2   tttcaaatccatacaattcaaagttaatcaggtttatggaaagtggacaaacctggtggagaattcggaaatcttttcgaacgcgatggccgagagagac  2688400                                              <---------MYB52(2)                                        --------->RAP2.3(1)                                        --------->ATERF1(1)                                        --------->At4g35610                                        <---------At4g35610                                        <---------LBD16                                        <------NtERF2                                       ------>NtERF2                                       <---------ATERF1(1)                                       <---------DEAR4(2)                                       <---------RAP2.6(1)                                      <---------RAP2.3(3)                                      <---------RAP2.3(2)                                      <---------RRTF1(3)                                      <---------ANAC46                                      --------->ALFIN1                                      <---------RRTF1(2)                                      --------->DEAR3(1)                                      <---------RAP2.6(2)                                      <---------DEAR3(1)                                     <---------At4g35610                                     --------->RAP2.3(1)                                     --------->DEAR4(2)                                     <------NtERF2                                     --------->DREB2C(1)                                     --------->At4g35610                                     <---------ABI4(1)                                    <---------RAP2.3(1)                                    <---------RAP2.6(1)                                    <---------ORA47(2)                                    ------>NtERF2                                    <---------ATERF1(1)                                    <---------RRTF1(1)                                    <---------DEAR4(2)                                   <---------RAP2.3(2)                                   <---------RAP2.3(3)                                   <---------RRTF1(3)                                   <---------RRTF1(2)                                   <---------RAP2.6(2)                                   --------->DEAR3(1)                                   --------->ATERF1(2)                                   <---------ANAC46                                   --------->ALFIN1                                   <---------DEAR3(1)                                  <---------ABI4(1)                                  --------->RAP2.3(1)                                  <------NtERF2 --------->MYB52(1)                                 <---------ATERF1(1)                                 <---------DEAR4(2)                                <---------RAP2.3(2)                                <---------DEAR3(1)                               --------->ATERF1(1)                               <---------At4g35610                                   <---------ARR14(2)                               --------->At4g35610                                  --------->ZAT2                            <------ZmHOX2a(1) --------->MYB46(3)                    --------->At4g35610                         <------NtERF2<---------ATERF1(2)                           --------->HSFB2a(1)                       <---------DEAR3(1)  <------NtERF2                            --------->HSFC1(2)                       <---------ANAC58<---------ERF1                        --------->LBD16  <------                       <---------ANAC46<---------RAP2.3(1)                  <---------LBD16  <------NtERF2                       <---------ANAC58<---------ORA47(2)                  <---------LBD16 --------->ALFIN1                      --------->ATERF1(1) --------->LBD16                  --------->TOE1(2)------>NtERF2                      <---------LBD16--------->ATERF1(1)                 ------->TEIL--------->ARR14(2)                      <------NtERF2<---------ATERF1(2)                --------->MYB46(3)  <---------MYB52(1)        --------->ATHB12--------->LBD16<---------RRTF1(1)             <---------MYB52(2) --------->LBD16 --------GLK1(2)    <---------DEAR3(1)--------->ATERF1(2)           --------->MYB52(1) <---------LBD16 ------->ARR14(2)   --------->ALFIN1<---------ERF1              <------ZmHOX2a(1)   <---------HSFC1(2) --------ARR14(2)--------->ALFIN1<---------RAP2.3(1)          --------->ALFIN1     ----------->ARR10 -->CCA1(2)      <---------AtMYB61--------->ATERF1(1)<---------ARR14(2)------->GAMYB<---------HSFB2a(1)   ggattcggaatcagtggagatggtggcggaggaagcggcggcggcggaacaaacggatagcgaagaggagcaacgaacgcgggagaagctccggtggccg  2688500                   <---------LBD16                 ----------->HVH21         <---------MYB52(1)        <----------DOF2                                                                             <       <---------ANAC58                          <---------ANAC46                                 <--       <---------ANAC58                   ------>MYB83                                            *TSS       <---------ANAC46     <-------TEIL  ------>MYB46(1)                                         --- ---ANAC46      --------->SPL7       <---------ALFIN1                            ---------->DOF2 ----   atggagatggcgttagggaacgacgggagtttcatagccacaccttccatggtggagaagacgaatgaacaagagtgagtcttcaaagtcacaagttcga  2688600           <---------WRKY38(1)          --------->WRKY18(1)         <-----------HVH21         <--------ZAP1         --------->At5g28300        <---------DEAR3(2)        ----------->GT1        <---------MYB46(3)       <---------ANAC46       <---------DEAR3(1)      <---------At4g35610      --------->ATERF1(1)      --------->At4g35610      <------NtERF2     <---------ATERF1(1)     <---------RRTF1(1)     <---------DEAR4(2)     <---------ORA47(2)     <---------RAP2.3(1)     ------>NtERF2     <---------ERF1    <---------RRTF1(2)    <---------RAP2.3(3)    <---------RAP2.3(2)    --------->ATERF1(2)    <---------DREB2C(2)            --------->CCA1(2)    --------->ALFIN1              --------->ARR11(1)    <---------RRTF1(3)            --------->ARR11(3)                                                -    <---------ATERF1(2)           --------->ARR14(2)                                          -------    <---------DEAR3(1)            <---------ARR11(3)      --------->ANAC46                 --------->WOX13(1) -----------RAV1(2)               <---------ARR14(2) <----------DOF2       <---------MYB52(1)<------- -------ALFIN1                ---------->DOF2   --------->MYB59  <---------AHL20(2)      ------------ ------>AtMYB61    --------->AHL20(2)      <------NtERF2<-----------GT1<---------PCF2<---------TOE1(3) ----->MYB46(3)    <---------AHL20(2)    <-----------------AGL1 --------->AHL20(2)   <---------TOE2(3)   ccacaggcggcggtcaaaagattaatttcatctaaagatatgggccgaattaggccttttactccattaaatgggcccttggtttttaaggtccaatcaa  2688700                                                           --------------->AGL15                                                       --------->ARR14(2)                                                       <---------ARR14(2)                                                       --------->ARR11(3)                                                       <---------ARR11(3)                <---------CCA1(1)                                                      --------->RVE1(1)                 <---------ARR11(3)                     ------>MYB83                     --------->CCA1(1)               <XXXXXXXXXXXXXX                     ------>MYB46(1)        --------->DOF5.7(2)                   --------->WRKY12                   --------->DREB2C(2)    --------->ANAC58 <---------------AGL15  ----------->HVH21                   ------->GAMYB          <---------ANAC55(2)                   <---------At4g35610                   --------->DEAR3(1)     --------->ANAC46 ------>ZmHOX2a(1)    --------->At4g35610 ---------->GT1   --------->MYB46(3)      --------->ANAC58--------->ANAC46      <-------GAMYB  <----- -->YAB1--------->MYB52(1)    --------->ZAT6<---------MYB52(1)                 <---------MYB46(3)---- --ATHB12         --------->DEAR3(2)      --------->ANAC55(1)              --------->DAG2<---------RVE1(1) >CBF  <-----------GT1 <----------DOF2    --------->ANAC55(2)            ---------->DOF2--------->ARR11(3)   accggttaaataccggttcaaccgactttgaaacactacaaaacacgttatctaaaatatcctccatttagtagaaaaaggcagttgacagatatttatg  2688800                                                                                                    -                                                                                                   <-            <---------ANAC55(2)                                                              <-------        --------->YAB1                                                                     --------->ATHB12        -------->HAHB4                    --------->ALFIN1                                <---------YAB1       --------->ICU4                  --------->DAG2                               <-----------HVH21       <---------YAB1                  <-----------------------TaNAC69(2)---------->DOF2------------- XXXXXXMIR780.2                   --------->DAG2         <------ZmHOX2a(2)      <---------ANAC58   -- ----YAB1  <-------TEIL       --------->At4g35610       <---------ARR11(3)      <---------ANAC46   -- ------>DOF2--------->ANAC55(2)  ---------->DOF2        --------->ARR11(3)      <---------ANAC58  ---   aaagaagtaatgatacgtagggaagcgaagacagcaaaagtaaggtgtgagagtgagagatcacatggggaagagcaaagaggcgttgtcatttgattgg  2688900           <---------ARR14(2)          <---------CCA1(2)   <---------ALFIN1   --------->AtMYB61  --------->MYB46(3) ------>MYB46(1)                                        <---------ALFIN1 ------>MYB83                                       <-----------HVH21 -------->ORA47(1)                                 --------->ANAC46  <---------ANAC58 --------MYB59                                     --------->bZIP60(2)     <-----------TBP --WOX13(1)--------->ARR14(2)                     <-------MYC3       <---------ANAC58     <---------ATHB12 -------->WRI1                                    ------->MYC3       <---------ANAC46  <---------WRKY12 ------->MYB46(3)                             --------->ETT(2)   ------->MYC3          <---------WRKY38(1) ------->DEAR3(1)                             <---------ZAT18    <-------MYC3         --------->WRKY18(1) ------>DEAR3(2)   <---------TOE1(2)     <------------CBF     <---------ALFIN1        ------------>CBF   accgaccacttcgtatcgtctcatgttccttcgcatccccaagaattgtccacatgtcacactcacacatgtcttggttttatatgcagtcaatgacgag  2689000        <----------DOF2        <---------DAG2                                 --------->MYB46(3)           --------->MYB52(1)     <-----------GT1                                   <---------ATHB12   --------->YAB1    <---------YAB1                                   --------->WOX13(1)  <---------YAB1  <--------HAHB4                  <----------DOF2  <------ZmHOX2a(2)   --------->YAB1  <----------ID1  --------->ATHB51    <---------ANAC58            --------->ARR11(3)  --------->AHL20(2)  <---------ICU4      <---------ANAC58    ---------->DOF2--------->MYB52(1)    --------->ANAC58 --------->ICU4    *TSS       <----------DOF2 ---------->DOF2   --------->YAB1 --------->ANAC58 <---------YAB1    <---------GLK1(2)<---------ICU4<---------ARR11(3)  <---------AHL20(2)        -----   ctcattattactttatgtacagtttcttatgcctttctttattacaaagaaagatcaatcaacgaatcacaatttataatcaagaaaaacggacaagaga  2689100  Previous    Next  AGI:  At1g08490.1    Description:  ATCPNIFS/ATNFS2/ATSUFS/CPNIFS/SUFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase. Identical to Cysteine desulfurase 2, chloroplast precursor (NFS2) [Arabidopsis Thaliana] (GB:Q93WX6;GB:Q9SJE3); similar to ATNFS1/ATNIFS1/NFS1/NIFS1 (ARABIOPSIS THALIANA NITROGEN FIXATION S HOMOLOG 1), cysteine desulfurase/ transaminase [Arabidopsis thaliana] (TAIR:AT5G65720.1); similar to unknown [Picea sitchensis] (GB:ABK25420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67306.1); contains InterPro domain Cysteine desulphurase, SufS; (InterPro:IPR010970); contains InterPro domain Pyr Range:  from: 2685662    to: 2688598    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08500.1    Description:  plastocyanin-like domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO67283.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN75991.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) Range:  from: 2689019    to: 2690048    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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