Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->ARR14(2)                     <---------ARR14(2)                    --------->ATERF1(1)              ---------->DOF2                   ------>NtERF2                   ------>ZmHOX2a(2)                   <---------ATERF1(1)           <---------ARR14(2)                  --------->DEAR3(1)             --------->ARR14(2)                  <---------DEAR3(1)           --------->LBD16                 <------NtERF2                <---------ANAC58                 --------->ATERF1(1)          <---------ANAC58                ------>NtERF2    =========================HOX2a_HOX2a                <---------RAP2.3(1)           <---------ANAC46                <---------ATERF1(1)    <---------ALFIN1                <---------DEAR3(2)    --------->ANAC58            <---------LBD16                ----               <---------At1g77200    --------->ANAC46 --------->ANAC58                         -----     <---------ARR14(2)  --------->LBD16     <---------LBD16     <---------LBD16                <----     --------->ARR14(2)<---------LBD16--------->ANAC58 --------->ANAC58                        <----- ------->DOF2<-----------HVH21   ========================HOX2a_HOX2a                       ========== -----HSFB2a(2)<---------DEAR3(1)<------ZmHOX2a(1)<------ZmHOX2a(2)          ------->TEIL  ----------   aaaagagaattcgaccgtcggcgactccggtataaggaccacgaccttgcggatcgaaagcaatgctctcgggaccttgaacctcgttaagaaacctgat  2683800                                                         <---------ANAC58                       <XXXXXXXXXXXXXXXXXXXXMIR391       <---------ANAC58                   <-----------RAV1(1)                  <------NtERF2                --------->HSFB2a(2)   --------->GLK1(1)  <---------ANAC58              ------->GAMYB                    <---------HSFB2a(2)   <---------GLK1(1)  <---------ANAC58           <---------DOF5.7(2)                 --------->LBD16 -->ZmHOX2a(2)  --------->GLK1(2)              --------->DOF5.7(2)                  <---------LBD16 ---->GLK1(1)  <---------ARR14(2)            <---------YAB1                        <---------LBD16 -----GLK1(1)  <---------GLK1(2)          ----------->HVH21                      <---------ARR14(2) ----ARR11(3)  --------->ARR14(2)         ----------->TGA1                      --------->GLK1(1) =====================RAV         <----------DOF2--------->MYB52(1)             <---------GLK1(1) ->RAV1(2)----------->RAV1(1)     --------------------->WRI1   --------->WOX13(1)--------->ARR14(2)   ctctgaattctgcaacagattctggcggtctctctcctttggaagtgacgataacggaggcatgtcaatcttgtaagttttgaaatccgggaacttggaa  2683900                                                         --------->HSFB2a(2)                                                    <------ZmHOX2a(2)                                                   <-----------ARR10                                                   --------->ARR14(3)                                                   <---------ARR11(3)                               <                                                   <---------ARR14(3)                               -                                                   --------->ARR14(2)                             ---           <---------ZAT14                         <---------ARR14(2)                            ----      ----------->HVH21                            --------->AGP1                                <---  --------->At4g35610                              --------->ARR11(3)                          ------  <---------ZAT2          --------->ZAT18        ----------->ARR10                            -------  --------->ZAT2   ------>ZmHOX2a(2)  ---------->DOF2------>ZmHOX2a(2)                 <---------TOE1(1)  <---------At4g35610     <---------ZAT18      ---------->DOF2                         <---------TOE2(1)   atggagctgtgactgaagggatcgatagcgcaatagatggcaaagacgagaaagatcttcgcgagtatgctcatggccattttctttgtacgagggatga  2684000    --------->ATHB12   --------->ICU4                                                             <---------DAG2   <---------YAB1                                                             <----------DOF2 --------->YAB1                                                           --------->ZAT14 ---------YAB1                                                            <---------ZAT14 -------->ICU4           <------MYB46(1)                                  --------->ZAT18 ------>YAB1             <------MYB83                                     <---------ZAT18 ----->ICU4            <--------P    <---------TOE1(3)                <---------------AtSPL8 ------YAB1          --------->ATHB12<---------TOE2(3)                --------------->AtSPL8 --->YAB1            <---------MYB46(3)                              --------->ZAT14 -->ICU4     >>>>>>>>>TBF1<---------HSFB2a(2)               --------->MYB111(1)               -------   tgatgatgatttgaagaagaaaatggttggggaagttttaaggtagagaagtagagaagaagtagttgcagtagagtacacttttctggttgaaaattta  2684100                                                                                           <---------AHL20(2)                                                                                           --------->AHL20(2)                                                                                       <---------AHL20(2)                                          <<<<<<<<<WRKY18                              --------->AHL20(2)                                         --------->WRKY18(1)                           <---------AHL20(1)                            --------->AHL20(2)                                    <---------MYB52(1)                            <---------ARR11(3)             --------->RAP2.6(3)   --------->LBD16      ------------>CBF      <---------AHL20(1)            --------->ARR14(2)    --------->ANAC46   *TSS  <------------CBF   --------->AHL20(1)  ------------>CBF  --------->GLK1(2)   --------->AHL20(2) <----------DOF2   <----------DOF2   ---------->DOF2      <---------ARR14(2)   <---------LBD16  ----- -->AHL20(2)   <---------At4g35610<---------TOE2(3)<------------CBF          -------->P--------->AHL20(1)   aaacttttctcaattgctgctctttttcgatatattaagaaaagtcaaggagcaattgcaaatcggctaatctgatggcaacccggtattaaattaaaaa  2684200                         <------ZmHOX2a(2)                        --------->ARR14(2)                                 -------->HAHB4                        <---------ARR14(2)                                 --------->YAB1                        <-----------ARR10                                  <---------ICU4                    <---------LBD16                                       --------->ICU4        -----                   ------->TEIL ------>MYB46(1)                           <---------YAB1--------->YAB1                ----------->HVH21    *TSS                               --------->YAB1 <---------ATHB12             --------->LBD16    ------>MYB83                <---------AHL20(2)       --------->WOX13(1) ----->DOF2<---------LBD16------>ZmHOX2a(2)   <---------ETT(2)         --------->AHL20(2)      ------   aagaaacatgaaaaccgggtgaaccggatcgaccttccattttttcggtagaccagttttatttattctgcaaataataatcgtcttcaatcagagaaaa  2684300                                                           <-----------RAV1(1)                                                           <---------MYB46(3)                                               --------->GLK1(2)                                               --------->ARR14(1)                                              <---------GLK1(2)                                              --------->ARR11(1)                                   --                                              --------->ARR14(2)                                  ---                                              <---------ARR14(2)                                  <--                            <---------AGP1   --------->HSFB2a(1)                                <----                      <---------AHL20(2)     <---------HSFB2a(1)                             --------                     <---------WOX13(1)      <---------HSFC1(2)                              <-------                   --------->ATHB12         ----------->ARR10                               <--------  <---------ZAT14<---------WOX13(1)---------->DOF2     --------->ATHB12                  --------->GLK1(1) ---->DAG2   <------ZmHOX2a(1)------>ZmHOX2a(2)--------->CCA1(2)     --------->DAG2      <---------GLK1(1) ---->DOF2   ========================HOX2a_HOX2a<-------TEIL    ----------->GT1        <------ZmHOX2a(1)   agtttgcagtgagaaggagattgattaatcgatctgagaaagatgggagattcggagtcatttgttgggaaaaattggaatggattgaaggatttctgga  2684400                                                --------->ANAC58                                                --------->ANAC58                                               ------>NtERF2                                              <---------ATERF1(1)                                           --------->ANAC46                                           ----------->HVH21                                         --------->ANAC46                                         --------->ANAC58                                       ------>MYB46(1)                               --------->GLK1(1)                                       ------>MYB83                                  <---------GLK1(1)                                      --------->MYB55(1)                           <------ZmHOX2a(1)                                     <---------MYB46(2)                            ==================         --------->YAB1              --------->AtMYB61                       <-----------HVH21   <------MYB83                      <---------MYB55(2)                     --------->TGA1a   <------MYB46(1)                   --------->MYB46(3)                     <---------TGA1a         < ------->ATHB12                     --------->ANAC46                        <---------O2           <- -------->HVH21                   <-----------GT1                           --------->O2           -- -------ZAT6                     <-------TEIL --------->DEAR3(1)          ------>NtERF2        ------ -----ANAC46                   --------->ARR14(2) <------NtERF2          --------->DEAR3(1)  <------- ->HSFB2a(2)                   <---------ARR14(2)------>NtERF2           ----------->HVH21   <------- --HSFB2a(2)                   <---------GLK1(2)--------->ANAC46       ============================== -LBD16 <---------YAB1   <-----------GT1 --------->ANAC58              ------>ZmHOX2a(1)--------->ATHB12   gtgataggttatcatttttcgaaaattacaccagattcaccaaacgcgacgcgcctcttccttcttggtcttcctccgacgtcgaggaattcattgcctc  2684500                ------>MYB46(1)                ------>MYB83                --------->MYB52(1)               <---------ALFIN1              <---------ABI4(2)              <---------MYB55(2)              --------->MYB46(3)      <-------TEIL                                                                               <--- ======HOX2a_HOX2a                                                                               <--- ------ZmHOX2a(2)                                                                 <---------ARR11(3) --------ARR14(2)                                                               <---------MYB52(1) ------->ARR14(2)   <---------MYB52(1)                                    <------MYB46(1)       <---- >NtERF2    ------->TEIL<-----------GT1                                   <------MYB83        ------- --ANAC58   <---------TCP20        <----------DOF2                    <-----------RAV1(1)     <------ --ANAC58   --------->PCF2     <---------CCA1(2)                  --------->ARR11(3)          <------ ======HOX2a_HOX2a --------->At5g28300                            <---------ARR11(3)   ----------->HVH21   cgatcccgttcatggacccaccgtaatttccttctatctttctctcgctctgtgttttggaatctatagatattgttggtccattatctatgactcggct  2684600                  <-----------HVH21                                                     ---------->DOF2 ---MYB83      --------->ZAT2                                                        --------->YAB1 ---MYB46(1)   <---------At4g35610         --------->ATHB12                         <---------YAB1 -----MYB46(3) --------->ZAT14         <<<<<<<<<TBF1 <<<<<<<<<<<<<<<<<LFY  <----------DOF2 ---->RAV1(2)  --------->At4g35610 <-----------GT1   >>>>>>>>>>>>>>>>>LFY  <---------DAG2      ------ ---ZAT2 <-----------GT1          <------------------------ANAC81 --------->GLK1(2)--------->AHL20(2) ---At4g35610  <---------ZAT2   <---------AHL20(2)  <-----------GT1    <---------MYB52(1)--------->DAG2   ggtactcgattttactctgctgtcatcggtttatttttttcttcttcatttgattttccattggaaagtttctgttactttttgatataataaagttcca  2684700  Previous    Next  AGI:  At1g08470.1    Description:  strictosidine synthase family protein. similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67432.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 2682130    to: 2684103    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08480.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK92625.1) Range:  from: 2684237    to: 2685624    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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