Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              <---------ATERF1(2)            --------->ATERF1(2)                                               <---------DAG2           <---------LBD16                                                    <----------DOF2          --------->MYB52(1)                                              <---------MYB111(2)          <---------At5g28300                                             <---------MYB46(2)   ------>NtERF2                                                        ------>MYB46(1) --------->LBD16                                                        ------>MYB83 ------>NtERF2             <---------TOE2(3)                           <---------ALFIN1 -------->DEAR3(1)       ---------->DOF2                              --------->MYB46(3) --------LBD16         <----------DOF2                      --------->YAB1<---------MYB111(1)       < -->ZmHOX2a(2)     --------->ZAT14             <---------MYB52(1) --------->ANAC58     <---------ALFIN1 -----GLK1(1)      <---------ZAT14   <----------DOF2       <---------ATHB12 ------>MYB83 ----------->RAV1(2) --->ARR14(2)      <---------ZAT18 <---------ZAT2        --------->WOX13(1) ------>MYB46(1)         < ----ARR14(2)--------->LBD16       --------->ZAT2  <----------DOF2--------->ANAC58    --------->MYB46(3)   cgccgggccatttaccggcagtgtgcttaaaggttccagctttgccttcgtttcttttccaatcagacaagacccacctacttttccatccacctgaaca  2671400                                                                                            <--------                                                                                            =========                                                                                       ---------->DOF2                                                                                    --------->ANAC58                                                                        <---------------AGL15                                                                        --------------->AGL15                                                                       ----------------->AGL2                                    --------->ANAC58                   <-----------------AG ---------                                    --------->ANAC58                   ----------------->AGL1                                  ---------->DOF2                      ==============================                           --------->AHL20(2)                          <-----------------AGL1   -----                         --------------->AGL15              --------->YAB1         --------->DAG2                         <---------------AGL15              ----------->GT1     <------ZmHOX2a(1)                        ================================================================MADS_MADS        ----------->GT1 ----------------->AGL2           <---------GLK1(2)     <----------ID1  <----- --------->YAB1         <-----------------AGL3<---------HSFB2a(2)    <<<<<<<<<GT-1---------->DOF2 <<<<<<<<ARR2           ----------------->AGL3--------->HSFB2a(2)    <-----------GT1--------->ANAC58 <<<<<<<<ARR1           =================================================================MADS_MADS   caatcttactaagttaattccataaacctataaatagaaagccaaaatccagaaccatagaatcgttatattaaccagaataggaaaagcaaagcctata  2671500                                                                                          --------->ARR11(3)     --------->GLK1(2)                                                                    <---------ARR11(3)    <---------GLK1(2)                                                                     --------->AHL20(1)    <---------ARR11(3)                                                                    <---------AHL20(1)    <---------ARR14(2)                                                                    --------->AHL20(2)    --------->ARR14(2)                                                           --------->YAB1   --------->HSFC1(2)         <-----------GT1                                    <---------ICU4   <---------HSFB2a(1)     <---------ARR14(2)              --------->ANAC58     <---------ATHB12   --------->HSFB2a(1)     --------->ARR14(2)      <---------ARR11(3)         --------->YAB1   <---------HSFC1(2)--------->ARR14(2)            --------->ARR11(3)        <---------------AGL15 -------AGL15        <---------GLK1(2)         --------->YAB1   ----------->GT1 <---------YAB1     -- ============================================================================================MADS_MADS ------>AGL15        --------->ARR11(1)       <---------ATHB12---------->DOF2--------------->AGL15--- =======MADS_MADS    <---------ARR14(2)  <---------ATHB12  --------->ANAC58  ======================== ---->YAB1      <------ZmHOX2a(1)     ------>ZmHOX2a(1)-------->P  <-----------GT1        <---------AHL20(2) ----YAB1     <---------TOE2(3)     --------->YAB1 --------->GLK1(2)         ========================   atagaagattctagtgaaggatggattcggattcactatcctaatcaaatcaaaatctaccaaggaaagttactacttactaatcatagcaatatattca  2671600                                          ----------->GT1                                          <----------ID1                                         ----------->GT1                                       ---------->DOF2                                    --------->LBD16                                   <---------------AGL15                                   <---------HSFB2a(2)                                   --------------->AGL15                                  ----------------->AGL2                                  <---------LBD16---------->DOF2                                  --------------->AGL15                                  ----------------->AGL3                                  <-----------------AGL1          --------->YAB1          <-----------------AG                      --------->ANAC46 ----------->GT1      <---------MYB52(1) ------------------------>ANAC81  <-----------GT1 ------->DAG2      <---------ATHB12--------->HSFB2a(2)                <---------AHL20(2) ------->DOF2<-----------GT1      ----------------->AGL1              --------->AHL20(2)        ===== ===================================================MADS_MADS     --------->AHL20(2)            ===== =================================================MADS_MADS   ----------->GT1                   -----   aaaaggaaacaaaaataacaaatcgttgttttgtttcccagaaaaggaaaaaaaagagagaagagtgtttatatatatacttcaccttcgaaatgctcct  2671700                --------->ANAC58                --------->ANAC58        <---------HSFB2a(2)        <---------LBD16       ------>ZmHOX2a(2)      <---------GLK1(1)      <------ZmHOX2a(2)     <---------ARR14(2)     <---------AGP1     --------->ARR14(2)     <---------ARR11(3)     --------->ARR11(3)     --------->ARR14(3)                          <------ZmHOX2a(1)     <---------ARR14(3)                    --------->CCA1(2) ============HOX2a_HOX2a              <---------ZAT14       ----------->GT1       <---------TOE2(3) =============HOX2a_HOX2a             --------->ZAT14>>>>>>>>>TBF1      <---------At4g35610 ->ZmHOX2a(1) ---------->DOF2     <---------------AtSPL8  --------->At4g35610     <---------TOE1(3)   ctaagaagatctcggagaaagccaatggggcaagagttagtacagagacgaggaagaagaagcagaaaaaactgagcttattttgaggtaatcccatttt  2671800                                                                                          -----------                                                                                         <-----------GT1                                                                                 <------MYB83                                                                                 <------MYB46(1)                                                                                <---------AtMYB61                                             <----------DOF2                  <---------MYB52(1)                --------->YAB1       <---------ANAC58                       <---------ANAC58                <---------ICU4 <------------CBF                             <---------ANAC46               <---------YAB1*TSS    <---------ANAC58            --------->WRKY38(1)  ----------->GT1 <---------GLK1(2)<---------YAB1   <---------YAB1    ---------->DOF2        <---------ANAC58   <-----   tcagaatttctcacttcatcatggttactgaaaaattgtgcttgggcctttatagcaaagcagaatgttgactcagtgtcgtttggtttagttacaatat  2671900                                                                    <---------ZAT14                                                                    <---------ZAT18                                                                    --------->ZAT14                                                                    --------->ZAT18                                                                 <---------ANAC58                                                                 <---------ANAC46                                                               <---------ZAT14                                                              --------->ALFIN1                                                             <---------ZAT14                                                             --------->ZAT14     <---------TOE1(3)                                      --------->ALFIN1   --------->KAN4(1)     <---------TOE2(3)   <-----------GT1                    <---------ANAC46   <---------KAN4(1)   --------->STY1(1)<----------DOF2                   <------NtERF2--------->ALFIN1             ----- ->CBF            ---------->ID1                    <---------DEAR3(1)        <---------KAN4(2)<----- -------CBF      <-----------GT1<-----------RAV1(1)<------NtERF2 <---------ANAC58   ---------->DOF2   tgcccctaaggtttggatttttctttttttctctatgttgtttttctcaagtcgtcgtcgcagtgtggagtggactgaagaatattcaaagtcgtttatc  2672000                                 <---------ICU4                                 --------->ATHB12                                 --------->YAB1                                 <--------ATHB1                                 -------->HAHB4                <---------ARR14(2) <---------WOX13(1)                             <-----------GT1        --------->ALFIN1         --------->ATHB51                              --------->YAB1      --------->CCA1(2)         <---------YAB1                             --------->ATHB12   --------->ANAC58             --------->ICU4<---------ANAC58            <---------YAB1   --------->ANAC58             <---------ATHB51                        <---------ICU4 --------->ARR11(3) ---->YAB1 ----------->GT1    --------->YAB1  <---------ANAC58          --------->YAB1 --------->ARR14(2) ----YAB1 <----------ID1     --------->AHL20(2)                        --------->ICU4  <---------ARR14(2)   atcgtaagaaatggggcaaaactggtctcaaataataattgctatgtttcttgctctaatctcttatattgccattatgatttataacaaatcttgttct  2672100                                                                                      <---------AHL20(2)                                                                       <---------AHL20(2)                                                                       <---------AHL20(1)                                                                       --------->AHL20(1)                                                                       --------->AHL20(2)                                                                      --------->AHL20(2)                                                                      <---------AHL20(2) <----------DOF2                                                                  <---------YAB1      <-----------GT1                                                                --------->YAB1   <---------AHL20(2)                                                              ------->TEIL       --------->AHL20(1)                                                           <---------YAB1        <---------AHL20(1)                            <---------YAB1              <---------ARR14(2)      --------->YAB1 <-----                  --------------->AtSPL8                --------->ARR14(2)      --------->AHL20(2)<--   aactaaatctagccgaatgttttgtacatgatacttgtagccaaatgttttttatacgaatatgaatcataaataaattcaattatattttctttatttt  2672200                                                      <---------AHL20(2)                                                     <---------AHL20(2)                                                  <--------HAHB4                                                  --------->YAB1                                                  <--------ATHB1                 <---------AHL20(2)               --------->ATHB51               <---------AHL20(2)                 <---------ICU4            <---------ARR11(3)                   --------->AHL20(2)            --------->AHL20(2)                   <---------ATHB51            <---------AHL20(1)                   --------->ICU4            --------->ARR11(3)                 --------->YAB1         --------->GLK1(1) >>>>>>>>>RAP2.2            <---------AHL20(2)        <---------TOE2(3)  <-----------RAV1(1)  --------->DAG2 ----AHL20(2)<---------AHL20(2)     ---------->DOF2  --------->AHL20(2)      ---------->DOF2 -------YAB1--------->AHL20(1) --------->AHL20(2)<---------ATHB12--------->MYB52(1)     --------->TOE2(3)   atgagagcgaagaatatattttttttgtagtcaaaaaataaaggttctacaataattaaatgtgggataacgaaatccaaaaagctccaatctaaaacag  2672300  Previous    Next  AGI:  At1g08450.1    Description:  CRT3 (CALRETICULIN 3); calcium ion binding. Identical to Calreticulin-3 precursor (CRT3) [Arabidopsis Thaliana] (GB:O04153;GB:Q93ZR4;GB:Q9SJE7); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to calreticulin 3 [Brassica rapa subsp. pekinensis] (GB:AAQ19995.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580); contains InterPro domain Concanavalin A-like lectin/glucanase (InterPro:IPR008985); contains InterPro domain Calret Range:  from: 2667822    to: 2671829    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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