Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->ANAC58                                                          --------->ANAC46                                                 --------->GLK1(2)                                                <---------ARR14(2)                                                --------->ARR14(2)                                                <---------GLK1(2)                                           --------->ANAC46                                         <-----------GT1  --------->ANAC58                                      <---------ICU4   <---------ARR14(2)          --------->At5g28300 --->YAB1                            --------->AHL20(2)--------->ARR14(2) --------->ANAC46 ---YAB1   --------->YAB1            --------->ICU4 <---------ANAC46  ------>ZmHOX2a(1)           <--   taatgttcaagaatcaaaaatcgagtcaaactcaccgaaatatttacgccgattctgtatacgacacaattcctctacgacttgctgtaactcccaattc  2645600                                                                            --------->YAB1                                                                    --------->TGA2(2)                                                                   <-----------HVH21                                                                   <-----------TGA1                                                                  --------->ANAC58                                                                  --------->ANAC58              <---------ARR14(2)                                  --------->ANAC46              --------->ARR14(2)                                  --------->ANAC55(2)              --------->GLK1(2)                                   <---------ANAC55(2)             <---------GLK1(2)                                    <---------bZIP60(1)        ----------->RAV1(1)                                       --------->bZIP60(1)       --------->ANAC46                                          <-----------STF1             <------MYB83       <---------ETT(1)                                         <-----------GT1               <------MYB46(1)   <----------DOF2           --------->YAB1                --------->ARR11(3)                 -------  <---------ANAC58   --------->At4g35610                   <---------AHL20(1)                --------  <---------ANAC58--------->LBD16--------->DAG2            <---------ARR11(3)                -------- -------MYB52(1) <---------ANAC55(2)          --------->YAB1  <----------DOF2  --------->AHL20(2)  <-   gtttgctttccgacagaatccgtagctacaatgaaaaattggagacaataagaaaactcaatatctttacgtcaccaaaaataaaacacgagggtttggt  2645700                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                   --------->MYB52(1)                                                                                  --------->ARR14(2)                                                                                  <---------ARR14(2)                                                                                 ====================                                                                                 ====================                                                                                 <------ZmHOX2a(1)                                                                                --------->ANAC46                                                                               --------->LBD16                                      <---------ARR11(3)                   <---------ARR14(2)    --------->LBD16                   --------->ARR14(2)                   --------->AGP1 --------->ALFIN1   <---------ANAC46                   <---------ARR14(2)           <---------TOE2(3)    <---------ANAC58  <---------LBD16                     --------->ARR11(3)      --------->DAG2  <-----------RAV1(2)   < --------->MYB52(1)                  <---------CCA1(2)       ---------->DOF2  <---------LBD16       - ---->GT1                   <-------TEIL                 --------->At4g35610--------->CCA1(2)      -- ->MYB46(2)             --------->LBD16                  <---------At4g35610<------ZmHOX2a(2)  <----- ->MYB59      <------ZmHOX2a(1)  --------->TOE2(3)       <---------LBD16   --------->ARR14(2)  <----- --------MYB52(2)      <-----------RAV1(2)           <----------DOF2       --------->ARR11(3)  <-----   aacttacggagacagaggaggctctccaggttcaatctcaaatcttcgagtgaaactttagcggaaagtgaggttgagatccaggaaacggcgtgcttcg  2645800                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)         --------->LBD16                                                                <---------ARR14(2)        --------->HSFB2a(2)                                                             <---------AGP1       --------->SPL7                                                                   --------->ARR14(2)       <---------LBD16                                                                  <-----------ARR10     <---------SPL7                                                                     --------->ARR14(3)     <-----------HVH21                                                                  <---------ARR14(3)   <-------TEIL                                                                         --------->ARR11(3)   ------>ZmHOX2a(2)                                                                    <---------ARR11(3)  <------ZmHOX2a(2)                                                                     --------->AGP1 --------->AGP1                                                                        <---------CCA1(2) <---------ARR14(2)                                                                    <---------ARR14(1) --------->ARR14(2)                                                                   ----------->ARR10 <---------ARR11(3)                                            --------->TGA2(2)    --------->At4g35610 --------->ARR11(3)                                           <-----------HVH21     <---------At4g35610 ========HOX2a_HOX2a                                         --------->ANAC58     <------ZmHOX2a(1) =========HOX2a_HOX2a                                        --------->TGA1a      ==============HOX2a_HOX2a ---------GLK1(1)                                    <---------AHL20(2)           ===============HOX2a_HOX2a -------->GLK1(1)                            <---------ANAC58<---------TGA1a--------->ZAT18 --------->ARR10                        --------->ZAT14      --------->ANAC46  <------NtERF2 ----ANAC46                             <---------ZAT14      --------->ANAC58 --------->LBD16 ----ANAC58                        <------ZmHOX2a(2)--------->AHL20(2)      <---------LBD16 ----ANAC58                <---------MYB46(3)<---------ANAC58--------->bZIP60(1)--------->ALFIN1   tgagatccgtccggagatggagaagacggtcgtttagatcagaacagtcgtggtttaaattggacgtcagagtcgaagcgcggaggagcagatcttggag  2645900                                                 --------->LBD16                                               --------->ATERF1(1)                                               <---------LBD16                                               <---------ANAC46    ----------->RAV1(1)                                               ----------------->AGL1                                            <---------RAP2.6(2)   --------->ANAC58                                            --------->ALFIN1      --------->MYB46(3)                 <---------ATHB12         --------->ALFIN1        --------->ANAC58         <---------At5g28300        --------->LBD16               ----------->HVH21        <-----------GT1        ----------->HVH21 <------NtERF2   --------->SPL7  --------->ANAC46           <---------ANAC58  <-----------------AGL1  --------->ANAC58           <---------ANAC58 <------NtERF2     --------->MYB52(1)            -------  --------->ANAC58---------->DOF2  <---------LBD16  --------->ALFIN1          --------->ALFIN1-------   gtctacgaaattaccgtcaataaagcctagtgcgagaccgggaagggtggccgggtttggcaagacgaacgacagtggaagtggatgttccatcggaagc  2646000                                                           --------->ATHB12               <---------MYB46(3)                          -------->HAHB4     <------NtERF2                                         --------->YAB1    ------>NtERF2                                          <---------ICU4    --------->LBD16                                       --------->ICU4   <---------LBD16                                        <---------YAB1   <---------ANAC46                            ------>ZmHOX2a(1)   --------->ETT(1)                            --------->At4g35610   --------->LBD16                             <---------At4g35610       <---------YAB1  <---------LBD16    <----------DOF2    <---------ANAC58  <---------ATHB12      --------->AHL20(2) -->ANAC58 <---------TOE2(3)    ---------->DOF2----------->RAV1(2)       --------->ICU4  <---------MYB52(1) -->ANAC58 --------->DAG2       *TSS    <---------ANAC58 <---------TOE2(3)      <---------AHL20(2)   atttgccgggaaaaaggttgttccttttgttttctaaagccttcgtgtcctctgagtctaatgatgggttatgttatgatttttaatttcccttaagttt  2646100                                                                                                  <--                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              -------                                                                                              <------NtERF2                                                                                              <------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             ------>NtERF2                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           --------->ATERF1(1)                                                                                           <---------At4g35610                                                                                      *TSS <------NtERF2                                                                           --------->REM1(2)---------                                                                           --------->SPL7 <---------RAP2.3(1)                                                                         --------->LBD16 <---------RAP2.3(3)                                                                        <---------ANAC58 <---------DEAR3(1)                                                                        <---------ANAC46 <---------DREB2C(2)                                                                        <---------ANAC58--------->ATERF1(1)                                                                  <---------GLK1(2) --------->ZAT18                                        --------->AHL20(2)--------->AHL20(2)        --------->ZAT14                            --------->AHL20(2)            <---------AHL20(2)        <---------ZAT18                 <----------DOF2 ----------->GT1         --------->AHL20(2)<---------ZAT14<---------ATERF1(1)              <-----------GT1  ---------->DOF2     --------->YAB1<---------At4g35610<---------ZAT14              <---------AHL20(2)--------->DAG2  <----------DOF2<-----------GT1     --------->ALFIN1<-    <---------ICU4      ------------------------>ANAC81  <---------AHL20(2)--------->ZAT14<---------ORA47(2)   aactaaaaattagtatttactttgaagaaaataaaaagtaaaaaaaatcgctttgataaaaaaatttagcttctccgtgcagcgagtgtagtcggcggct  2646200      <----------DOF2 -------TOE2(3) ------TGA2(2) ------>TGA1 ------>HVH21 -GAMYB -->ATERF1(1) ---ZAT2                                         <---------ARR14(2) -->ZAT2                                         --------->ARR14(2) ---->bZIP910(2)                             <------NtERF2 -->At4g35610                                ------>NtERF2 ---At4g35610                                --------->LBD16 --RAP2.3(1)                                --------->DEAR3(1) --DEAR3(2)                                 --------->RAP2.3(2) --ATERF1(1)                                <---------ANAC46 --MYB46(3)                                --------->ATERF1(1) --ERF1                                    <------NtERF2 -RAP2.6(2)              --------->ANAC58  --------->RAP2.3(1)                       <---------ANAC58 -RAP2.3(2)              --------->ANAC58 ------>NtERF2                              <---------ANAC58 -RAP2.3(3)              --------->ANAC46 <---------ATERF1(1)                    <XXXXXXXXXXXXXXXXXXX -DEAR3(1)         <----------DOF2       --------->ANAC46                       <XXXXXXXXXXXXXXXXXXXXMIR398B/C -ATERF1(2)--------->TOE1(3)       <---------MYB52(2)       <---------TOE1(3) <---------TOE2(3) >ATERF1(2)--------->TOE2(3)----------->RAV1(1)  --------->GLK1(2)       <----------DOF2    <-------- --------ANAC46 --------->ZAT6     --------->MYB46(3)       <---------TOE2(3) <---------TOE1(3)    --   gacgttttctttaccctaacacttttgaagcaacataacaaacgcgccgcgaatccatttttaagggtttagagacttttagggtttacttgagaacaga  2646300                        <---------MYB52(1)                       <-------GAMYB            --------->AtMYB61                   <---------O2                 <---------ALFIN1 --------->ALFIN1  --------->O2               ----------->RAV1(1)                    --------->ANAC58 XMIR398A     ---------->DOF2            ---------->DOF2     --------->CCA1(2)---------->DOF2    ---- -ZAT14    <----------ID1        <------ZmHOX2a(2)--------->MYB46(3)--------->GLK1(2)--------->ANAC58 ------->CCA1(2)  <-----------------------TaNAC69(2)      <---------YAB1---------->DOF2         <----   gagatggggaagagcgaaaagacgtcgttggggcgatcactcgtgaagcaccacaaccatatgatacaagaatccaaagacaaaggcaagtactacaaga  2646400                   <---------ARR11(1)                   <---------ARR14(2)                   ------->TEIL                     <---------ICU4                   --------->GLK1(2)                -------->ATHB1                   --------->ARR14(2)               --------->ATHB12                  <---------CCA1(2)             ------------>ATHB5               <---------HSFB2a(2)             ------>NtERF2                                       <-            --------->ARR11(3)                --------->ANAC58                                     <-          <---------HSFB2a(1)                 --------->ANAC46<---------ZAT2                       --          --------->HSFB2a(1)   <-----------HVH21  <---------YAB1         <------NtERF2        ------          <---------HSFC1(2)   --------->bZIP60(1) <---------ATHB12    <------NtERF2           <-----          --------->HSFC1(2)   <---------bZIP60(1) --------->ICU4   <------ZmHOX2a(1)       ---------        ---------->DOF2 ----------->HVH21     --------->ANAC58--------->At4g35610          --------->AHL20(2) ----->GLK1(2) --------->HSFC1(1)       <---------bZIP60(1)   --------->ZAT2         --------->ANAC46 -----GLK1(2)  --------->HSFB2a(2)   ----------->HVH21        <---------At4g35610<----------DOF2   --   atctacagaagaaagttctcgaatctgtgactgaggtcagtgacatcgacgccatcattgagcaagctgaggaggcagagcgtctttacaccattaatca  2646500  Previous    Next  AGI:  At1g08400.1    Description:  chromosome structural maintenance protein-related. similar to MAG2 (MAIGO2) [Arabidopsis thaliana] (TAIR:AT3G47700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81787.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68276.1); contains InterPro domain RINT-1/TIP-1 (InterPro:IPR007528) Range:  from: 2643327    to: 2646032    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08410.1    Description:  GTP-binding family protein. similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT2G27200.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89192.1); similar to Os12g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067291.1); contains InterPro domain GTP-binding; (InterPro:IPR005289); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073) Range:  from: 2646186    to: 2649376    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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