Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------AHL20(2)                                                                           --------->AHL20(2)                                                                      <---------MYB52(1)                                   <-----------GT1                   <----------DOF2            --------->ALFIN1------>NtERF2                       <---------GLK1(1)            <---------REM1(1)     <------------------------ANAC81------>ZmHOX2a(2)    <-----------HVH21    <---------At4g35610     <----------DOF2--------->GLK1(1)         -----------   --------->DEAR3(1)    --------->At4g35610<---------At4g35610--------->ARR11(3)  --------->AHL20(2) <---------At5g28300 <-----------RAV1(1) <----------DOF2       <---------ARR11(3)----------->GT1   tatcaccgtcgatggtgttgcaaatgttgctgccatttttcttctttgctgctttctcccaaactgatctcctttatttttttaagtaaatacaacacaa  2641800                                                           --------->YAB1            <---------AHL20(2)                         *TSS                         <---------YAB1            <---------YAB1              <---------YAB1                          ------------>CBF          --------->ICU4          --------->ARR11(3)                 <------ZmHOX2a(1)           <---------ALFIN1          <---------GLK1(2)---------->DOF2--------->HSFB2a(2)         ----------->HVH21 <----------DOF2  --------->ANAC58     <---------ZAT18    <---------HSFB2a(2)     <----------DOF2<---------ICU4  --------->ANAC46     <---------ETT(2)  <---------ANAC46 <---------ATHB12 --------->ANAC58     <----  --------->ANAC58  <---------ANAC46  --------->GLK1(1)   ------------>CBF --------->bZIP60(2)<------ >RAV1(1) <---------ARR11(3)         --------->ARR11(3) --------->WOX13(1) --------->ANAC58--------->YAB1   acacaagaaatagatttttattctgtggacaaagagagagatttcgaggatgtgttatcaatcaatagctttgtgacacctcattattttctttgatatt  2641900                    <---------WOX13(1)                   <------------CBF                                                     <-----------GT1         <---------ANAC46                                                           <---------RVE1(1)         <---------ANAC58        <---------AHL20(2)                                <---------GLK1(2)         <---------ANAC58   --------->LBD16                                        <---------ARR11(3) -------RAV1(1)  <---------YAB1 --------->AHL20(2)          <---------AHL20(2)     --------->ARR11(3) ------CBF       <---------TOE2(3)        ---------->ID1<---------AHL20(2) <---------AHL20(2) <------   gtgggtctatttcttggataagattgattccagatttattttttgtctcaaaatttgtttattttttttgtttgtattttataaagatttttacatcttt  2642000                  <---------AHL20(2)                  --------->AHL20(2)                  <---------YAB1                 <---------AHL20(2)                 --------->AHL20(2)             <---------ICU4             --------->ATHB12            <---------ATHB12            <---------YAB1                                                                <---------ARR14(2)            --------->ICU4     <----------ID1                                             --------->ARR14(2)    <---------ANAC58           --------->ANAC58                                           <---------ARR11(3)    <---------AtLEC2           --------->ANAC58                            --------->KAN4(2)    <---------ANAC58          --------->DAG2           <---------AHL20(2) <---------KAN4(1) ----DOF2  <---------TOE2(3) ---------->DOF2   --------->GLK1(1)     --------->YAB1       --------->ARR11(3)   tagtttgcatgttaatgattttaattagtcaaaaagccaaaacaccatgaattccattttttttttttcaaacacaatattccctctcccaatatctgcc  2642100                                          <------MYB46(1)                                          ----------->GT1                                          <------MYB83                    ------->TEIL         --------->MYB59                  <---------ZAT14    <------MYB46(1)                                                -                  --------->ZAT14    <---------DEAR3(2)                                             <                <---------------AtSPL3 <---------MYB52(1)      <---------TOE2(3)               <-----               <---------At5g28300   <------MYB83    <---------MYB52(1)                   <---------At4g35610              <-----------GT1       --------->MYB59 --------->LBD16                       --------->At4g35610   --------->YAB1 <---------SPL7<---------MYB46(3)<---------LBD16  ---------->DOF2<------------CBF<--   aaaaatcaaaatcaaattactgtaccgataccatttgttcggttcggtttaatccggtaatcgatgaggtaaaggcatttgtgaaattgatcagccgagt  2642200                                                                                                  <--                                                                                                  ---                                                                                              ------>NtERF2                                                                                             --------                                                                                             <-------                                  --------->At5g28300                  --------->DEAR3(1)   <------NtERF2                                  <------NtERF2                --------->ANAC58            --------->ABI4(1)           *TSS                  <---------MYB46(3)            --------->ANAC58            ------>NtERF2       <------NtERF2            <---------DEAR3(1)            --------->SPL7              --------->RAP2.3(3)       ----------->GT1          <---------ANAC46            ----------->HVH21             --------->DEAR3(1)      --------->LBD16          <---------ABI4(1)           --------->LBD16               --------->ERF1      <---------MYB46(3)       <------NtERF2               <---------HSFB2a(2)           --------->ORA47(2)      ------>NtERF2           <---------RAP2.3(1)         <---------HSFB2a(2)          --------->ANAC58     <---------ANAC46        <---------RAP2.3(2)          <---------LBD16  ------>NtERF2 --------->DEAR4(2)    <---------LBD16          <---------RRTF1(3)           --------->HSFB2a(2)          --------->ANAC46  <---------DEAR3(1)         <---------RAP2.6(2)         <---------LBD16<---------ATERF1(1)<---------ATERF1(1)  ------>ZmHOX2a(2)          <---------DEAR3(1)        <---------ARR14(2) --------->ANAC58--------->RAP2.3(2) <------ZmHOX2a(2)          --------->At4g35610       --------->ZAT2  --------->DEAR3(2) --------->RAP2.3(1) -------->ARR14(2)          <---------At4g35610       <---------ZAT2  --------->MYB46(3)<---------ATERF1(1) ---------ARR14(2)        ---------->CDC5             <---------At4g35610 --------->ANAC58--------->RAP2.6(2) ------HVH21           <---------At4g35610            --------->At4g35610 --------->DEAR3(1)--------- -------DEAR3(2)       --------->At4g35610  <----------DOF2--------->HSFB2a(2)         --------->ANAC58   cggatcggcgggtaaaatggactacagcttagcggcggtgaagatgctttgttctcagctccgggacgctaaaccgacgccttctcagaacgccgcctcc  2642300          <---------DAG2        ------->TEIL      <---------ZAT18      <---------ZAT14    <------MYB46(1)      --------->ZAT14    <------MYB83    --------------->AtSPL8    <------NtERF2     <---------ANAC58  <---------DEAR3(1)  <---------ANAC58 -------STY1(1)    ------->MYC3 ------>STY1(1)    <-------MYC2               --------->YAB1 ->DEAR3(1)        ------->MYC2          <---------ATHB12 --ALFIN1 <----------DOF2<---------MYB46(3)--------->WOX13(1)                     ------>ZmHOX2a(1) >ATERF1(1)        <-------MYC3  <---------GLK1(2) ------>ZmHOX2a(1)    ----------->GT1   ctaggcggtgtactttttcaacgtgcttggttacaggttcccaatctatcatcctctcattgtctatagctaaattgttaattcctgtttcgatgacttc  2642400                                                --------->ICU4                                                <---------ATHB51                                            <------NtERF2                                            --------->RAP2.3(1)                                           <---------DEAR4(2)                                           <---------ATERF1(1)                                           <---------RAP2.3(1)                                           <---------ERF1                                           <---------ORA47(2)                                           ------>NtERF2                                          <---------RAP2.6(2)                                          <---------RAP2.3(3)                                          <---------RAP2.3(2)                                          --------->ATERF1(2)                                          <---------DEAR3(1)                                          <---------ANAC46                                         <------NtERF2                <----------DOF2          <---------ABI4(1)                      <----------DOF2               <---------ANAC58          --------->ATERF1(1)            <---------ARR14(2)               <---------ANAC58         <---------RAP2.3(1)             --------->ARR14(2)          -          <---------AtLEC2              <---------ATERF1(1)          --------->ANAC55(2)           --      <-------GAMYB                 --------->ALFIN1                 --------->ANAC58  <---------ZAT2     <---------ANAC46             --------->LBD16<---------ICU4      <---------ANAC55(2)    <--------     <---------ANAC58           <---------LBD16 <---------YAB1       --------->ANAC58  --------->ZAT2     <---------ANAC58  ---------->ID1  <---------DEAR3(1)         ----------->TGA1     <---------At4g35610 <---------ANAC58      --------->PCF5 --------->ATERF1(1)         ----------->HVH21    <---------GLK1(1) <---------ANAC58   <---------AtMYB61<---------MYB46(3)   <---------MYB52(1) <---------MYB52(1)   ---   aagtcttgcgttgcagggcgttttggtccccttctccggtggaggcggcgataattgtctggtacttgatgacggaaccggtcttttggagctcggtctc  2642500                                               --------->MYB55(2)                                               --------->MYB111(2)                                               <---------MYB46(3)                                               --------->MYB111(1)                                              <--------P                                             <-------GAMYB                                            <---------MYB46(3)                                        ----------->HVH21                                      --------->ANAC55(2)                     --------->ARR14(2)                                      <---------ANAC55(2)                     <---------ARR14(2)                                      <---------ANAC58                       --------->At4g35610                                      <---------ANAC58                       <---------At4g35610        <-----------GT1              <-------TEIL  <------MYB46(1)   --------->SPL7  <---------ATHB12               <---------KAN4(2) <------MYB83    <---------SPL7 ------>MYB83            <---------GLK1(1) <---------AtMYB61       <---------SPL1(2) ------>MYB46(1)         --------->GLK1(1) <---------YAB1         <---------ANAC58 -------->MYB52(1)<---------WRKY12<---------HSFB2a(1)             <---------ANAC58 ------->DEAR3(1)<---------MYB52(1)  ------->TEIL <---------AtMYB61<---------ZAT14          --------- ---HVH21       <-----------HVH21<---------------AtSPL3          --------------->AtSPL3    <---------TOE2(3) ------>MYB46(3)--------->LBD16<------ZmHOX2a(1)<-------GAMYB  ------------------>SPL14    <---------TOE1(3)   accaacgattttgccctccgtcaatggaaatcaggaatgtacgtgatggttgttggtgtctaccaagtccgtactgggcagatacctctacttaaggtta  2642600               <----------DOF2            <---------ARR11(3)            --------->ARR11(3)          --------->MYB59        <------ZmHOX2a(2)                       ----------->GT1<---------YAB1 -->GT1<----------DOF2   ------->TEIL>>>>>>>>>>>>>>>>>LFY     <---------ZAT6      ----------->GT1   atttgaaaactttaggtctttgatatgcacattggatcactccaatgtgattttagtttcgctagagttgcagactagtcaaattggtttattatgccaa  2642700  Previous    Next  AGI:  At1g08380.1    Description:  PSAO (photosystem I subunit O). similar to putative 16kDa membrane protein [Nicotiana tabacum] (GB:CAB75430.1) Range:  from: 2640810    to: 2641825    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08390.1    Description:  nucleic acid binding. similar to unknown [Populus trichocarpa] (GB:ABK93675.1); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) Range:  from: 2642211    to: 2643282    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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