Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <------ZmHOX2a(1) <---------AHL20(2)                                                 --------->MYB59 -------->AHL20(1)                                                <<<<<<<<<MYB2 -------->AHL20(2)                                                <<<<<<<<<MYB1               ------- ---------AHL20(1)       --------->At4g35610                      <---------MYB52(1)         >>>>>>>> ---------AHL20(2)      ------->TEIL                          ===============HOX2a_HOX2a <---------ANAC55(2) ---->AHL20(1)      --------->DAG2                            <------ZmHOX2a(2)          --------->ANAC55(2) -----AHL20(1)     ---------->DOF2                            =========================HOX2a_HOX2a -----AHL20(2)--------->TOE2(3)   --------->AHL20(2)    --------->TOE1(2)          <---------ARR11(3) ---->AHL20(2)<---------------AGL15         <----------DOF2  --------->ARR11(3)    --------->ARR11(3) ----AHL20(2) --------------->AGL15      --------->ANAC58    <---------ARR11(3)   <---------CCA1(2) --->AHL20(2)----------------->AGL2      --------->ANAC58------>ZmHOX2a(1)      ------>ZmHOX2a(1)   aatttattagaaaataccctaaaaagcacctcaaaattaaaacaagctttattaagttcctaagatcagttaggactcattcctatatcttaagtaacat  2641400                                                                                         ----------->HVH21                                                         --------------->AGL15     ------>MYB83                                                  <---------YAB1                   ------>MYB46(1)                                           --------->ARR11(3)                      -------->P                                          --------->GLK1(1) --------->YAB1        --------->MYB55(1)                              --------->YAB1  <----------DOF2                    <---------MYB59            --------->HSFB2a(2)           <---------GLK1(1)<---------YAB1        <---------MYB111(1)   <---------ZAT6    <-----------GT1 ----------->GT1     <---------------AGL15<-----------GT1    <xxx -->YAB1    <---------HSFB2a(2)  --------->AHL20(2)  <---------YAB1    ---------->DOF2 --------->O2 >MYB98    <---------LBD16   <---------YAB1<---------ARR11(3)   ----------->GT1  --------->TOE1(2) --   aactagtgatacttctggagttttaagcattttcataaaatgtgatatctttgttattactatgagaagaaaataaagagtaacctaccaagtgactctt  2641500          --------->DEAR3(1)          <-------PIF5          ------->PIF5         --------->ATERF1(1)                 <---------MYB46(3)         --------->DEAR3(2)              <-----------RAV1(1)                                  -------         <---------LBD16          <---------ANAC46      ----------->GT1                      <-------        ------->TEIL             ---------->ID1        --------->DAG2                    <---------GLK1(2)      <---------ABI4(2)      <---------ANAC58<------MYB46(1)       --------->TOE2(2)     <---------ARR11(3)  --------->LBD16            <---------ANAC58<------MYB83          --------->TOE1(2)   <---------YAB1 xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------TOE2(3)----------->GT1               --------->ICU4 ---->ZmHOX2a(1)     ---------->DOF2 <----------DOF2 ---------->DOF2                <---------ATHB12   cctcccgatgcaccggcgagtctcaaagggttcttggcgcttaatgttggttttaaaaaggctaaaaaacatacgagaaatcacaaatcaagattatcat  2641600                                                                                    --------->ARR11(3)                                                                                    <---------ARR14(2)                                                                                    <---------ARR11(3)                                                                              <---------WOX13(1)                                                                         <---------MYB46(3)                                                                      <------MYB46(1)                                                                      <------MYB83  --------->ARR14(2)                                                                     --------->MYB55(2)                                                                     --------->MYB111(1)         <xxx                              ------------------------>ANAC81        <---------MYB46(3)       ------>NtERF2                     <---------ATHB51           <---------------AtSPL8<---------ANAC46     --------->LBD16                     --------->ICU4    ----------->GT1               --------->MYB111(2)------>ZmHOX2a(1) -->YAB1       <---------WOX13(1)  ---------->DOF2  <-------TEIL     --------->MYB46(2)--------->TOE1(2) --YAB1      --------->ATHB12---------->DOF2 ---------->DOF2         <---------AtMYB61------>ZmHOX2a(2)   atgcatatatatgtttgattgaaattattcgaaaagagaaagagagaaaaagagtacatgaagagaagggtttggtggtgatggatgatcctccgaggcc  2641700                                                                           --------->AHL20(2)                                                                           <---------AHL20(2)                                                                      <---------MYB52(1)            --------->ALFIN1       <-----------GT1                   <----------DOF2            <---------REM1(1)     <------------------------ANAC81------>ZmHOX2a(2)    <-----------HVH21       ------>NtERF2                       <---------GLK1(1)   --------->DEAR3(1)    <---------At4g35610     <----------DOF2--------->GLK1(1)         ----------- <---------At5g28300 <-----------RAV1(1) <----------DOF2       <---------ARR11(3)  --------->AHL20(2) xxxxxxxxxxxxxsmallRNA(s)--------->At4g35610<---------At4g35610--------->ARR11(3)----------->GT1   tatcaccgtcgatggtgttgcaaatgttgctgccatttttcttctttgctgctttctcccaaactgatctcctttatttttttaagtaaatacaacacaa  2641800                                                           --------->YAB1            <---------AHL20(2)                         *TSS                         ------------>CBF          --------->ICU4              <---------YAB1                          <---------YAB1            <---------YAB1          <---------ARR11(3)                 <------ZmHOX2a(1)           <---------ALFIN1          <---------GLK1(2)---------->DOF2--------->HSFB2a(2)         ----------->HVH21 <----------DOF2  --------->ANAC58     <---------ETT(2)   <---------HSFB2a(2)     <----------DOF2<---------ICU4  --------->ANAC46     <---------ZAT18   <---------ANAC46 <---------ATHB12 --------->ANAC58     <----  --------->ANAC58  <---------ANAC46  --------->GLK1(1)   ------------>CBF --------->ANAC58--------->YAB1 >RAV1(1) --------->ARR11(3)         --------->ARR11(3) --------->WOX13(1) --------->bZIP60(2)<------   acacaagaaatagatttttattctgtggacaaagagagagatttcgaggatgtgttatcaatcaatagctttgtgacacctcattattttctttgatatt  2641900                    <---------WOX13(1)                   <------------CBF                                                     <-----------GT1         <---------ANAC58                                                           <---------RVE1(1)         <---------ANAC46        <---------AHL20(2)                                <---------GLK1(2)         <---------ANAC58   --------->LBD16                                        <---------ARR11(3) -------RAV1(1)  <---------YAB1 --------->AHL20(2)          <---------AHL20(2)     --------->ARR11(3) ------CBF       <---------TOE2(3)        ---------->ID1<---------AHL20(2) <---------AHL20(2) <------   gtgggtctatttcttggataagattgattccagatttattttttgtctcaaaatttgtttattttttttgtttgtattttataaagatttttacatcttt  2642000                  <---------YAB1                  --------->AHL20(2)                  <---------AHL20(2)                 --------->AHL20(2)                 <---------AHL20(2)             --------->ATHB12             <---------ICU4            <---------ATHB12            --------->ICU4                                                                <---------ARR14(2)            <---------YAB1     --------->ANAC58                                           <---------ARR11(3)    <---------ANAC58           --------->ANAC58                                           --------->ARR14(2)    <---------AtLEC2           <----------ID1                              --------->KAN4(2)    <---------ANAC58          --------->DAG2           <---------AHL20(2) <---------KAN4(1) ----DOF2  <---------TOE2(3) ---------->DOF2   --------->GLK1(1)     --------->YAB1       --------->ARR11(3)   tagtttgcatgttaatgattttaattagtcaaaaagccaaaacaccatgaattccattttttttttttcaaacacaatattccctctcccaatatctgcc  2642100                                          ----------->GT1                                          <------MYB46(1)                                          <------MYB83                    ------->TEIL         --------->MYB59                  <---------ZAT14    <------MYB83                                                   <                  <---------SPL7     <------MYB46(1) <---------MYB52(1)                             -                <---------------AtSPL3 <---------MYB52(1)                                      <-----               <---------At5g28300   <---------DEAR3(2)        <---------TOE2(3)          --------->At4g35610              <-----------GT1   <---------MYB46(3)<---------LBD16                         <---------At4g35610   --------->YAB1 --------->ZAT14   --------->MYB59 --------->LBD16---------->DOF2<------------CBF<--   aaaaatcaaaatcaaattactgtaccgataccatttgttcggttcggtttaatccggtaatcgatgaggtaaaggcatttgtgaaattgatcagccgagt  2642200                                                                                                  <--                                                                                                  ---                                                                                              ------>NtERF2                                                                                             <-------                                                                                             --------                                  --------->At5g28300                  --------->DEAR3(1)   <------NtERF2                                  <------NtERF2                --------->ANAC58            ------>NtERF2           *TSS                  <---------MYB46(3)            --------->ANAC58            --------->ABI4(1)       <------NtERF2            <---------DEAR3(1)            --------->SPL7              --------->DEAR3(1)       ----------->GT1          <---------ANAC46            ----------->HVH21             --------->RAP2.6(2)      <---------MYB46(3)       <------NtERF2               --------->HSFB2a(2)           --------->ORA47(2)      ------>NtERF2            <---------ABI4(1)           --------->LBD16               --------->DEAR4(2)      --------->LBD16         <---------RAP2.3(1)         <---------HSFB2a(2)          --------->ANAC58     <---------ANAC46        <---------DEAR3(1)           --------->HSFB2a(2)          --------->ANAC46    <---------LBD16          <---------RAP2.3(2)          <---------LBD16  ------>NtERF2 --------->ERF1  ------>ZmHOX2a(2)          <---------RRTF1(3)          <---------LBD16<---------ATERF1(1)<---------ATERF1(1)  <---------DEAR3(1)         <---------RAP2.6(2)       <---------ARR14(2) --------->DEAR3(1)--------- <------ZmHOX2a(2)          <---------At4g35610       --------->At4g35610 --------->ANAC58--------->RAP2.3(2) ---------ARR14(2)          --------->At4g35610       <---------ZAT2  --------->DEAR3(2) --------->RAP2.3(1) -------->ARR14(2)        ---------->CDC5             <---------At4g35610 --------->ANAC58--------->RAP2.3(3) ------HVH21           <---------At4g35610            --------->ZAT2  --------->MYB46(3)<---------ATERF1(1) -------DEAR3(2)       --------->At4g35610  <----------DOF2<---------HSFB2a(2)         --------->ANAC58   cggatcggcgggtaaaatggactacagcttagcggcggtgaagatgctttgttctcagctccgggacgctaaaccgacgccttctcagaacgccgcctcc  2642300  Previous    Next  AGI:  At1g08380.1    Description:  PSAO (photosystem I subunit O). similar to putative 16kDa membrane protein [Nicotiana tabacum] (GB:CAB75430.1) Range:  from: 2640810    to: 2641825    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08390.1    Description:  nucleic acid binding. similar to unknown [Populus trichocarpa] (GB:ABK93675.1); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) Range:  from: 2642211    to: 2643282    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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