Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->YAB1             <---------YAB1            <---------AHL20(2)            --------->AHL20(1)           --------->YAB1      ------>NtERF2      --------->LBD16                         <---------HSFB2a(2)      <---------RAP2.6(3)                     --------->HSFB2a(2)     --------->ANAC46                       <------ZmHOX2a(2)     --------->RAP2.6(2)                    =============================HOX2a_HOX2a     --------->DEAR3(1)                    <---------ARR14(2)     <---------ATERF1(2)              --------->GLK1(2)     --------->ATERF1(2)              --------->ARR14(2)    <---------LBD16               ------>ZmHOX2a(2)                                <---------At4g35610  ------>ZmHOX2a(2)         ----------->RAV1(2)       <---------WRKY12      --------->ZAT18 -------YAB1<---------AHL20(1)  <---------ARR14(2)    <---------WRKY38(1)   <---------ZAT18 ------>ICU4--------->AHL20(2)  --------->ARR14(2)   --------->WRKY18(1)    <---------ZAT14   ------>NtERF2 ---ID1<------NtERF2       ------->TEIL    --------->ARR14(2)     <------ZmHOX2a(1)--------->At4g35610 ------TaNAC69(2)<---------MYB46(3)   <---------ARR14(2) --------->AtLEC2   --------->ZAT14  --------   atgatcgccggcattataatggttcgacgagcctgatccgattccgatccagaaggtcaatgcaagtaggacttgtagtacagtaagcagaaattgcgcc  2635600                             ---------->DOF2                     --------->HSFB2a(2)                           <---------HSFB2a(2)                   <---------HSFB2a(2)                           --------->HSFB2a(2)                   <-----------RAV1(2)                  --------->ZAT2                             --------->GLK1(1)          --------->TOE2(3)                  <---------ZAT2                             --------->At4g35610        --------->YAB1                  <---------At4g35610              ==========================RAV      <---------ARR11(3)                  --------->At4g35610              ----------->RAV1(1)       <---------At4g35610  ---                 <-----------RAV1(1)    <---------ATHB12    <---------ARR11(3)        --------->ARR11(3) ->ANAC46      <---------At4g35610--------->MYB52(1)        --------->ARR11(3)    --------->HSFB2a(2)   atgaattggcactcttcttctgctgggttccaaaagaaacgaatcaatatgtgcaacaagaagagctccagaagcagtcatcttctaaaatcttaatcta  2635700                                                                                                 ----                                                                                                <----                                                                                               ------           ----------->GT1                                 <---------ANAC46             <---------ANAC58   <---------At4g35610                                  <---------O2                    <---------ANAC58   --------->At4g35610                                  --------->bZIP60(1)     --------->TOE1(3)---- --------->MYB46(3)                                     <---------bZIP60(1)     --------->TOE2(3)<--- ------>MYB46(3)--------->AHL20(2)       ---------->DOF2--------->O2  ---------->DOF2   <---------ANAC46   acaacagctcaagaagaaaaaaattccatagctagagagaacacaaagtcacaagacgacgtcgtagaggcacaaagtcaaacctgaatggcttaagccg  2635800           <-----------GT1                                                        <-----------RAV1(1)     <---------MYB46(3)                                                 --------->ICU4       -------- ----->MYB52(1)                                                      --------->AHL20(2)     <-------- -----RAP2.6(3)              ---------->DOF2       <-------GAMYB   --------->ANAC58   <------MYB46(1) --->RAP2.6(2)          --------->At4g35610   <---------MYB46(3)   --------->ANAC58  <---------AtMYB61 ----->ARR14(2)       <---------ICU4     --------->RAP2.6(3) ------>ZmHOX2a(2)    =================== ------ARR14(2)       --------->YAB1   *TSS <---------MYB52(1)     --------->ANAC55(2)<------MYB83   aactgagtggttttgactagaccatcatcagaaaagtctccaagacggtagtcggatgttagatcgctcaagtaatttttggttttgttggtctcacgtt  2635900    ------>NtERF2                                                                    ------>ZmHOX2a(1) --------->At4g35610                                                                --------->TOE2(3) --------->ZAT2                      --------->ZAT6                               <---------YAB1 <---------ZAT2                   <---------CCA1(2)                            <---------YAB1 <---------At4g35610             ------>ZmHOX2a(1)                           <---------ICU4 ----------->RAV1(2)          ---------->ID1               <---------TOE1(3) --------->YAB1 ->ANAC55(2)               <---------DAG2---------->DOF2   --------->MYB59   <--------HAHB4       <-- -TOE1(2)     <---------GLK1(1) --------->TOE2(3)          <---------TOE2(3)<---------YAB1  --------- ============RAV           <----------DOF2     ------------>CBF     <---------AHL20(2)  <---------YAB1   ttcagctgcccatttgatttcagtttgggcttttccttatctctaaaggcccaatttcatttaggtttagtttatttgatcattatccttactataaagg  2636000                                             <---------TOE2(2)                                      <-----------HVH21                                      <-----------TGA1                                     <---------O2        --------->HSFC1(1)           =========================================bZIP_DOF        <---------HSFB2a(2)          --------->O2        <---------HSFC1(1)           <---------TGA1a        *TSS xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------RAV1(2)    ===========================================bZIP_DOF                                   <<<<<<<<<TBF1    <----------DOF2                  <---------bZIP60(1)                               <<<<<<<<<TBF1   <---------DAG2 <---------TOE2(3)  --------->bZIP60(2)                      <---------ANAC58 -------ATERF1(1) <---------TOE1(3)  --------->bZIP60(1)           <----------DOF2<---------GLK1(2) ->DOF2 --------->HSFB2a(2)          --------->TGA1a        --------->MYB46(3)<---------ANAC58   cttcgcctttcgagaaatttagggtttcttctgtctgtctcgtcactcaggtttgtgcctcaacgactgcttcacttctagcttgattcttcttcttcgt  2636100                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                              -------                                                                                            <------ZmHOX2a(2)                                                                                          ===========                                                                                          ===========                                 --------->HSFB2a(2)                                    --------->LBD16                                 <---------HSFB2a(2)                                   <---------HSFB2a(2)                       <---------YAB1                       <----------DOF2      <---------ANAC58 ---                      --------->KAN4(2)               <---------YAB1             <---------ANAC58<---                   <---------GLK1(2)              <---------ARR11(3)      <----------DOF2 <------ZmHOX2a(1)     --------->ZAT14 <---------KAN4(1)            --------->ARR11(3) ---------->ID1    --------->HSFB2a(2)     <---------ZAT14 --------->KAN4(1)            <---------GLK1(2)<-----------RAV1(1) <---------LBD16   ttatatgtatactgtacattagattattcttgtttctcgagcttctgctatagattttgattcttttttttgttgtctttgtttcgtttccaggatcaga  2636200  --------->At4g35610  <---------At4g35610 ---->AGP1 -----ARR11(3) -----AGP1 ---->ARR11(3)                           <---------CCA1(2) ---->ARR14(2)                          ------->TEIL -------ARR10                        --------->ANAC58 -----ARR14(2)                       --------->ANAC46 ----CCA1(2)                         --------->ANAC58                                   <---------YAB1 ---->ARR10<----------ID1         ----------->HVH21                        --------->ANAC55(2)     <- ===HOX2a_HOX2a                <-------TEIL                                <---------ANAC55(2)     <- ====HOX2a_HOX2a           <---------TOE2(3)               --------->AHL20(2)         --------->YAB1 --->ZmHOX2a(2) --------->ANAC58<---------ANAC58           <---------AHL20(2)         ----------->GT1 ---ZmHOX2a(2)  --------->ANAC58<---------ANAC58     <---------At5g28300   --------->ANAC46        --   tcttagctaaattgagacaagctcaaaatgaggtacttgacgcatctcttacattcactgtttaattagagaacaatacgtctctgaatcgtgattcaga  2636300                                                            --------->ATHB12                      <--                                              <---------ANAC55(2)                                 ---             <-----------HVH21                --------->ANAC46<---------WOX13(1)           <---------DAG2 --------ANAC46  --------->At4g35610          --------->ANAC55(2)              <-------GAMYB    ----- --------ANAC55(2)            <---------AHL20(2)           <---------YAB1      <----------DOF2 <----- ------->ANAC55(2)            --------->AHL20(2)         --------->YAB1      <-------TEIL  <---------   gacgtattgttcttctgtcatatgcaataagtttaattagagaacaatacgtctctgaatcgtgattgttttttggatgtgcgttattgatagctttatg  2636400                    --------->ANAC46     <---------AtLEC2 -------YAB1        --------->ANAC58<---------ARR14(2)                                  <---------ARR11(3) -------->GT1       --------->ANAC58--------->ARR14(2)                                  --------->ARR11(3) ---->YAB1     ----------->HVH21--------->ZAT14                                     --------->TOE2(3) ----YAB1     <---------WOX13(1)<---------ZAT14                  <-----------------AGL3<---------CCA1(2) -DOF2      <------ZmHOX2a(1)   <---------At4g35610 <----------DOF2       <---------AtLEC2   atgttaatagtctaggattgacacgaagttgttctgcagttttgcataaatgctctttactaaggcctctaaatttggatgacaaatctaaatcttgcct  2636500  Previous    Next  AGI:  At1g08350.1    Description:  endomembrane protein 70 family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48747.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) Range:  from: 2632807    to: 2635839    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08360.1    Description:  60S ribosomal protein L10A (RPL10aA). Identical to 60S ribosomal protein L10a-1 (RPL10AA) [Arabidopsis Thaliana] (GB:Q8VZB9;GB:Q9SJF4); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.1); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.2); similar to Os02g0321900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046690.1); similar to unknown [Picea sitchensis] (GB:ABK22320.1); contains InterPro domain Ribosomal protein L1, 2-layer alpha/beta-sandwich; (InterPro:IPR016094); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) Range:  from: 2636008    to: 2637912    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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