Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                                                                                                -----                                                                                                -----                                                                                            ---------                                                                                           <---------YAB1                                                                                       <-----------HVH21                                                                      ------>ZmHOX2a(1)<-----------TGA1                                                               ==============HOX2a_HOX2a   --------->ICU4                                                <---------GLK1(2)  ------>ZmHOX2a(1)  --------->ANAC58                            <<<<<<<ZML2--------->ARR11(3)      ------>ZmHOX2a(2)      --------->ANAC46             --------->WRKY18(1)       <---------ARR11(3)     <---------GLK1(1)       --------->ANAC58 ---------DOF2      ---------->DOF2   <---------CCA1(2)      <---------ARR11(3)      --------->MYB46(3)   tctttgagttccatggtcaaactaaagctagaacaaaaacatatcttacacattctctaacttgatctcctcctcttagattactcacccgtcatcataa  2635400                                                                          ------>MYB46(1)       ----------->GT1                                                    ------>MYB83       --------->ANAC58                                               <---------TCP15(1)       --------->ANAC58                                          <---------ANAC46     ---------->DOF2                                      <---------ARR14(2)<----------DOF2   --------->YAB1                                      --------->TOE1(1) <---------ALFIN1   --------->AHL20(2)                                  --------->TOE2(1)--------->MYB46(3)        ---  <---------ATHB12                 --------->CCA1(2)  <---------LBD16 <---------ARR14(2)          <-- ---->ANAC58                      --------->ARR11(1) --------->TOE2(2)--------->PCF2         <------- ---->ANAC46                      <---------ARR11(3) --------->TOE1(2)--------->ARR14(2)  --------->MYB52(1) ---->ANAC58   <-------TEIL   ---------->DOF2      -------->P <---------ANAC46     <----------------- >YAB1--------->DAG2  <---------ICU4             --------->MYB46(3)  <------ZmHOX2a(1)   ---------->DOF2   gccaataaaaagcaaaatgcataagaattaccaaaagatttgaatttgagaacaacctcggattgtggagaggacccactttgttgacgaacaaagggac  2635500              --------->YAB1             <---------YAB1            <---------AHL20(2)            --------->AHL20(2)           --------->YAB1      <---------RAP2.6(3)      ------>NtERF2                           --------->HSFB2a(2)      --------->LBD16                         <---------HSFB2a(2)     --------->DEAR3(1)                     =============================HOX2a_HOX2a     <---------ATERF1(2)                    <------ZmHOX2a(2)     --------->RAP2.6(2)                   <---------ARR14(2)     --------->ATERF1(2)              --------->ARR14(2)     --------->ANAC46                 <---------ARR14(2)    <---------LBD16               ------>ZmHOX2a(2)                                --------->At4g35610  ------>ZmHOX2a(2)         ----------->RAV1(2)       <---------WRKY12      --------->ZAT14 ------>ICU4--------->AHL20(1)  <---------ARR14(2)    <---------WRKY38(1)   <---------ZAT18 -------YAB1<---------AHL20(1)  --------->ARR14(2)   --------->WRKY18(1)    --------->ZAT18   ------>NtERF2 ---ID1<------NtERF2       ------->TEIL    --------->ARR14(2)     <------ZmHOX2a(1)<---------At4g35610 ------TaNAC69(2)<---------MYB46(3)   --------->GLK1(2)  --------->AtLEC2   <---------ZAT14  --------   atgatcgccggcattataatggttcgacgagcctgatccgattccgatccagaaggtcaatgcaagtaggacttgtagtacagtaagcagaaattgcgcc  2635600                             ---------->DOF2                     --------->HSFB2a(2)                           --------->HSFB2a(2)                   <---------HSFB2a(2)                           <---------HSFB2a(2)                   <-----------RAV1(2)                  --------->ZAT2                             --------->At4g35610        --------->TOE2(3)                  <---------At4g35610                        --------->GLK1(1)          --------->YAB1                  --------->At4g35610              ----------->RAV1(1)       <---------At4g35610  ---                  <---------ZAT2                   ==========================RAV      <---------ARR11(3)                 <-----------RAV1(1)    <---------ATHB12    --------->ARR11(3)        --------->ARR11(3) ->ANAC46      <---------At4g35610--------->MYB52(1)        <---------ARR11(3)    --------->HSFB2a(2)   atgaattggcactcttcttctgctgggttccaaaagaaacgaatcaatatgtgcaacaagaagagctccagaagcagtcatcttctaaaatcttaatcta  2635700                                                                                                 ----                                                                                                <----                                                                                               ------           ----------->GT1                                 <---------ANAC46             <---------ANAC46   <---------At4g35610                                  <---------bZIP60(1)             <---------ANAC58   --------->At4g35610                                  --------->O2            --------->TOE2(3)---- --------->MYB46(3)                                     <---------O2  ---------->DOF2   <---------ANAC58 ------>MYB46(3)--------->AHL20(2)       ---------->DOF2--------->bZIP60(1)     --------->TOE1(3)<---   acaacagctcaagaagaaaaaaattccatagctagagagaacacaaagtcacaagacgacgtcgtagaggcacaaagtcaaacctgaatggcttaagccg  2635800           <-----------GT1                                                        ===================     <---------MYB46(3)                                                 --------->ICU4       -------- ----->MYB52(1)                                                      --------->AHL20(2)     <-------- -----RAP2.6(3)              ---------->DOF2       <-------GAMYB   --------->ANAC58   <------MYB83 --->RAP2.6(2)          --------->At4g35610   <---------MYB46(3)   --------->ANAC55(2)<------MYB46(1) ----->ARR14(2)       --------->YAB1     --------->RAP2.6(3) ------>ZmHOX2a(2)    <-----------RAV1(1) ------ARR14(2)       <---------ICU4   *TSS <---------MYB52(1)     --------->ANAC58  <---------AtMYB61   aactgagtggttttgactagaccatcatcagaaaagtctccaagacggtagtcggatgttagatcgctcaagtaatttttggttttgttggtctcacgtt  2635900    ------>NtERF2                                                                    ------>ZmHOX2a(1) <---------ZAT2                                                                     --------->TOE2(3) ----------->RAV1(2)                 --------->ZAT6                               <---------YAB1 <---------At4g35610              <---------CCA1(2)                            <---------YAB1 --------->At4g35610             ------>ZmHOX2a(1)                           --------->YAB1 --------->ZAT2               ---------->ID1               <---------TOE2(3) <---------ICU4 ============RAV           <----------DOF2     ------------>CBF     <---------AHL20(2)  <---------YAB1 ->ANAC55(2)               <---------DAG2---------->DOF2   --------->MYB59   <--------HAHB4       <-- -TOE1(2)     <---------GLK1(1) --------->TOE2(3)          <---------TOE1(3)<---------YAB1  ---------   ttcagctgcccatttgatttcagtttgggcttttccttatctctaaaggcccaatttcatttaggtttagtttatttgatcattatccttactataaagg  2636000                                             <---------TOE2(2)                                      <-----------TGA1                                      <-----------HVH21                                     --------->O2        <---------HSFC1(1)           --------->bZIP60(2)        --------->HSFB2a(2)          --------->bZIP60(1)        <---------HSFB2a(2)          <---------bZIP60(1)        --------->HSFC1(1)           <---------TGA1a    <----------DOF2                  --------->TGA1a                                      <<<<<<<<<TBF1    ===========================================bZIP_DOF                       <---------ANAC58   <---------DAG2 <---------TOE1(3)  =========================================bZIP_DOF <<<<<<<<<TBF1 -------ATERF1(1) <---------TOE2(3)  <---------O2           --------->MYB46(3)<---------ANAC58 ->DOF2 *TSS xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------RAV1(2)    <----------DOF2<---------GLK1(2)   cttcgcctttcgagaaatttagggtttcttctgtctgtctcgtcactcaggtttgtgcctcaacgactgcttcacttctagcttgattcttcttcttcgt  2636100                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                               <-----                                                                                              -------                                                                                            <------ZmHOX2a(2)                                                                                          ===========                                                                                          ===========                                 <---------HSFB2a(2)                                    --------->LBD16                                 --------->HSFB2a(2)                                   --------->HSFB2a(2)                       <---------YAB1                       <----------DOF2      <---------ANAC58 ---                      --------->KAN4(2)               <---------YAB1             <---------ANAC58<---                   <---------GLK1(2)              <---------ARR11(3)      <----------DOF2 <------ZmHOX2a(1)     --------->ZAT14 --------->KAN4(1)            <---------GLK1(2)<-----------RAV1(1) <---------HSFB2a(2)     <---------ZAT14 <---------KAN4(1)            --------->ARR11(3) ---------->ID1    <---------LBD16   ttatatgtatactgtacattagattattcttgtttctcgagcttctgctatagattttgattcttttttttgttgtctttgtttcgtttccaggatcaga  2636200  --------->At4g35610  <---------At4g35610 ---->ARR14(2) -----AGP1 ---->ARR11(3) -----ARR11(3)                           <---------CCA1(2) -------ARR10                           ------->TEIL -----ARR14(2)                       --------->ANAC58 ---->AGP1                           --------->ANAC58 ----CCA1(2)                         --------->ANAC46                                   <---------YAB1 ---->ARR10<----------ID1         ----------->HVH21                        --------->ANAC55(2)     <- ====HOX2a_HOX2a               <-------TEIL                                <---------ANAC55(2)     <- ===HOX2a_HOX2a            <---------TOE2(3)               <---------AHL20(2)         ----------->GT1 --->ZmHOX2a(2) --------->ANAC58<---------ANAC58           --------->AHL20(2)         --------->YAB1 ---ZmHOX2a(2)  --------->ANAC58<---------ANAC58     <---------At5g28300   --------->ANAC46        --   tcttagctaaattgagacaagctcaaaatgaggtacttgacgcatctcttacattcactgtttaattagagaacaatacgtctctgaatcgtgattcaga  2636300  Previous    Next  AGI:  At1g08350.1    Description:  endomembrane protein 70 family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48747.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) Range:  from: 2632807    to: 2635839    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08360.1    Description:  60S ribosomal protein L10A (RPL10aA). Identical to 60S ribosomal protein L10a-1 (RPL10AA) [Arabidopsis Thaliana] (GB:Q8VZB9;GB:Q9SJF4); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.1); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.2); similar to Os02g0321900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046690.1); similar to unknown [Picea sitchensis] (GB:ABK22320.1); contains InterPro domain Ribosomal protein L1, 2-layer alpha/beta-sandwich; (InterPro:IPR016094); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) Range:  from: 2636008    to: 2637912    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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