Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               ---------->DOF2                                                        --------->ZAT18                                                        <---------ZAT18                                                 --------->ATHB12                                                 <--------HAHB4                                                 --------->YAB1                                                 <---------ICU4                                        <-------TEIL<---------ICU4                 --------->YAB1     --------->LBD16<---------YAB1     <---------ANAC58             ------->GAMYB <---------ATHB12     <---------ANAC58     ---------->DOF2       --------->ICU4 -->MYB46(3)  <----------DOF2   -------->P      <---------YAB1                             <---------YAB1 >P  <---------ANAC46   --------->At4g35610<---------At4g35610                     <---------ATHB12   ccatgttccttgaattctttcatatcagcaaagtaaccccgattcatctcatcattactgccctaaatcacatcaaattccactaatcaacttctcattg  2582900                                    ------->TEIL                                    <---------ARR14(2)                                             <-   <------ZmHOX2a(2)                --------->GLK1(2)                               --------->ANAC58-  <---------ARR11(3)                --------->ARR14(2)     ---------->DOF2   ---------->DOF2       --  --------->ARR11(3)      <---------ATHB12    <------ZmHOX2a(1)      ------->TEIL   --------->ANAC58-   agacgatctatgtcgaaacagatagcaaatcaatgctgaatctgaataggagcaaaacccaaaaagaattgaatctagataaaggcaagcttacagtcta  2583000                                                             <------ZmHOX2a(2)                                                            <---------AGP1                                                            --------->AGP1                            --------->LBD16                 --------->ARR14(2)                            <XXXXXXXXXXXXXXXXXXXXMIR168A/B  <---------ARR14(2)                           <---------HSFB2a(2)         ----------->RAV1(1)                           --------->HSFB2a(2)         ------->GAMYB                          <---------LBD16  --------->RAP2.6(2)     --------->ANAC46              <--- --------ZAT18       <---------YAB1        ----------->RAV1(1)------>ZmHOX2a(2)               ------- -------->ANAC58 <----------DOF2        --------->ANAC58    <---------ARR11(3)               -------- ------->ZAT18  <---------ANAC58        --------->ANAC58    --------->ARR11(3)     ---------->DOF2 -------->ANAC58<---------ANAC58      ---------->DOF2 --------->MYB46(3)          <---------MYB52(1)   gcacgctcatcttcaattgctttcttattcccgaactgtgcaaagccacaacaacaacgacagatctataaacaacgtttctccgataagcgaaattgat  2583100                                                         --------->At4g35610                                              <---------WOX13(1)                       <---------AHL20(2)     <--------P --------->ZAT2                      --------->YAB1         <-------GAMYB                 --------->TOE2(3)          <------MYB46(1)                 --------->TOE1(3)          --------->MYB55(2)                 --------------------->WRI1 <---------MYB46(3)                 <---------DAG2             <------MYB83 <---------At4g35610               -------->P                  <---------AtMYB61               ------>MYB46(1)             --------->ALFIN1               ------>MYB83               <---------MYB52(1) <------NtERF2                   <-------       <---------GLK1(2)             --------->MYB52(1)  <---------ZAT2               <---------GLK1(2) ------ICU4   ------>ZmHOX2a(1) ==========================HOX2a_HOX2a               <---------YAB1 -->YAB1     <---------MYB59    <------ZmHOX2a(1)       --------->ARR11(3)          --------->ICU4 --->GT1   --------------->AtSPL8---------->DOF2   ------>ZmHOX2a(2)              --------->YAB1    -   aatttctcagaatttcctaccttataaaaatcgaggaaagaacgggtggttgatcgaagagctggcatttgagaagggagagagtcatgattctcgtatc  2583200                                   <---------At4g35610                     <------NtERF2                                   --------->At4g35610                   <---------DEAR3(1)                           <---------MYB46(3)              <---------ARR14(2)                         <---------ANAC58                  --------->ARR14(2) <------NtERF2                         <---------ANAC58                 <------ZmHOX2a(1)--------->ATERF1(1)                         <---------ANAC46      ==================HOX2a_HOX2a ------>NtERF2 --CCA1(2)             <---------YAB1          ------>ZmHOX2a(2)       <-----------HVH21 -------->ALFIN1------>ZmHOX2a(1)  <---------ZAT14     <-----------RAV1(2)<---------ATERF1(1)   gagtgagggagaagagtccttgatgatgcttgttgagagcagagactgatctatgcttcaggattcgattcaacgtcgtcgccattttagtagagcttaa  2583300                                    ------>MYB46(1)                                    ------>MYB83                                  <---------MYB59                                 --------->MYB46(3)                                 <--------------OsCBT                                              --                            --------->ATERF1(1)                                               -------                            <------NtERF2                                            <-----------RAV1(1)                           --------->LBD16                                           <---------ANAC58                           ------>NtERF2                                             <---------ANAC58                          <---------DEAR3(1)                                     <XXXXXXXXXXXXXXXXXXX                          --------->DEAR3(1)                                  <---------GLK1(2)   <--                          --------->ATERF1(2)                                 <---------ARR11(3) ----                       <-----------RAV1(1)                                    <---------ARR14(2) ----                    *TSS  <---------ATERF1(2)                                 --------->ARR14(2)-----               <XXXXXXXXXXXXXXXXXXXXXMIR173     <------------CBF      ------>ZmHOX2a(1)       -------          <------MYB46(1)<---------LBD16--------->ANAC46            ----------->RAV1(2) <---------MYB46(3)          <------MYB83 ----------->HVH21--------->ANAC58            =============================RAV         --------->MYB59------>NtERF2   --------->ANAC58          --------->ARR11(3) <---------ANAC46   accctatttgtttggttatgtctctctgccggcgaaccaaacacgcttgaaattgaaaacgagtctaaaatcctgaaccagatttttgtgtgggtaacca  2583400                            ---------->DOF2                           <---------ICU4                           --------->YAB1                           -------->HAHB4                          <---------YAB1<----------DOF2     <------ZmHOX2a(1)      <---------GLK1(2)--------->AHL20(2)                --------->HSFB2a(2)<---------ANAC58 ------->YAB1          <---------AHL20(2)                --------->HSFC1(1) <---------ANAC58 -->MYB46(3)       --------->LBD16      <---------DAG2   <---------HSFC1(1) <------MYB46(1) XMIR774           ----------->GT1   <---------ALFIN1    <---------HSFB2a(2)<------MYB83 -------ATHB12   <---------LBD16    <---------ALFIN1 <---------MYB52(1)<---------ANAC58 -->MYB46(1)   --------->ARR14(2)  <------NtERF2   <---------------AGL15 <---------MYB52(1) -->MYB83   <---------AHL20(2)    --------->ANAC46 <---------ANAC58    <---------ANAC58 ---->WOX13(1) <---------ARR14(2) --------->ANAC58 <---------ANAC58    <---------ANAC46 ----->CBF  --------->AHL20(2)    --------->ANAC58 --------------->AGL15<-------GAMYB      <---------   atcaaaccgattttttaaatccggtttaattatagcccccaacttttgggcttccgtttctaggaattgttttgcgttgggtttcaaatgctcatattcc  2583500                                                                               <---------ANAC55(2)                                                                    <---------AHL20(2)                                                                    --------->AHL20(2)                                        <---------At4g35610        <---------AHL20(2)                                 <---------AHL20(2)            <---------AHL20(2)                             <---------RVE1(1)                 --------->AHL20(2)                             <---------CCA1(1)                 --------->AHL20(1)       ----------->GT1      <---------ARR11(3)           --------->YAB1        ----------->GT1     --------->ZAT14        --------->ARR11(3)         --------->AtLEC2 --------->AHL20(2)      -----     <---------ZAT14     <---------HSFB2a(2)    --------->AHL20(2) --------->AHL20(2) --------->AHL20(1)   <---------ZAT14       --------->HSFB2a(2)    <---------AHL20(2) <---------AHL20(1) --------->ARR11(3)   --------->ZAT14    <-----------GT1   --------->At4g35610   --------->AHL20(2)      <---------AHL20(1) -TaMYB80      <-----------GT1   --------->AHL20(2) <---------AHL20(2)  <---------AHL20(2)     <-----   aggcctgtactgtgatttatcaattttctagatatttatttcatctgtatttatttcattcaaaattaattaatttaaattatgtaaaaatattgttatc  2583600                          --------->YAB1                         <---------YAB1                      --------->AHL20(2)                      <---------AHL20(2)                     --------->AHL20(2)                                                            <-                 =================================================================MADS_MADS        <-                 --------------->AGL15                            <---------------AGL15            <-              <-----------GT1                                   --------->TOE2(3)              <-----         <---------AHL20(2) <---------YAB1                    <---------YAB1   <-----------GT1<------ ---->YAB1 <---------AHL20(2)--------->YAB1                  --------->KAN4(2) --------->YAB1 <------ ----YAB1<---------YAB1--------->YAB1                ---------->DOF2     ----------->GT1  <----------DOF2   aaaatttgaatattattttccaaatttataatcataaacatttttctaagaaaaaaaaaggcttattcttaaatatagaaataacaatctcactttgctt  2583700                                                                       --------->TOE2(3)                                                                  <---------At4g35610                                                                 --------->RAP2.3(2)                                                                 --------->RRTF1(3)                                                                 --------->DEAR3(1)                                                                 --------->RAP2.6(2)                                                              --------->ANAC46                                                              ------->GAMYB                                                              --------->DEAR3(1)                                --------->ANAC55(2)          <---------MYB55(2)                                <---------ANAC55(2)          <------------AtMYB77                                --------->ANAC46 <---------YAB1 --------->RAP2.3(1)      <----------DOF2--------->ANAC58           <---------AHL20(2)--------->At4g35610       --------- --------ANAC58      --------->ANAC58           --------->AHL20(2)------>NtERF2             --------- --------AtLEC2   --------->LBD16              --------->YAB1--------->MYB46(3)             --------- --------ANAC58  --------->ANAC46             <---------YAB1 --------->DEAR3(2)--------->MYB46(3) -----DOF2       --------->ANAC58  --------->ARR14(2)       <---------At5g28300<---------ATHB12 ---ANAC58       --------->ANAC58  <---------ARR14(2)      --------->MYB52(1)--------->WOX13(1) <---- ---ANAC58      <---------LBD16 --------->ANAC55(1)--------->GLK1(2)   --------->YAB1       ---------   tgcatgttcttttatacatccgcaaacaacttatacgtattggcatctattataatctgtctaaccgccgctaccatagcaatcacccctaaacacgaaa  2583800  Previous    Next  AGI:  At1g08220.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO16719.1); contains InterPro domain ATP10 (InterPro:IPR007849) Range:  from: 2581019    to: 2583320    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08230.2    Description:  amino acid transporter family protein. similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G41800.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16699.1); contains InterPro domain Amino acid transporter, transmembrane (InterPro:IPR013057) Range:  from: 2583651    to: 2586741    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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