Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ------>NtERF2                                                                                         ----------->RAV1(1)                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                      <---------ARR14(2)                              ------>ZmHOX2a(2)                     --------->ATHB12 ------->TEIL                        --------->ALFIN1<------NtERF2                <---------YAB1        --------->ARR14(2)         ============================HOX2a_HOX2a           --------->ZAT6       <---------AHL20(2)  ---------->DOF2     <-----------RAV1(1)         <---------ARR11(3)   <---------YAB1   <---------------AGL15   <---------TOE2(3)--------->ANAC46        <---------ICU4 <---------WOX13(1)  <---------MYB52(1)    <------ZmHOX2a(1)----------->HVH21   attagactcattatctctatgagtgattgagtattatatgaatccgtttctaaacaaagatgccgaaggagttgatgttggggtctgatcgcgccagaaa  2567100                                    --------->At5g28300      <---------AHL20(2)       <-----------GT1          <---------ANAC58            <---------ATHB12 <---------TOE1(2)              <---------ANAC46      --------->GLK1(2) <---------TOE2(2)              <---------ANAC58     <---------GLK1(2)                   ---------->DOF2 <---------TOE2(3)         ---------->DOF2       ---------->DOF2               <---------MYB52(1)----   acttaggtttttctctctgtgtttgaaccaaaagtcgtggtaactctgtctcaaagaatctaataaatctctaattagaccgtttgtaagtaaaagaaaa  2567200                                                                                 <----------DOF2                                                                                --------------->AGL15                                                                            <---------MYB111(2)                                <---------WOX13(1)                --------->AHL20(2)                              --------->ATHB12                    <---------ICU4<---------DAG2                              -------->HAHB4                      --------->ATHB51    <---------HSFB2a(2)                              <--------ATHB1                     --------->ICU4----------------->AGL2                              <---------ICU4                   --------->YAB1  ----------------->AGL3                         <---------ARR11(3)                   --------->AHL20(2)--------->TOE2(3)                         --------->ARR11(3)        --------------->AtSPL8   <------------MYB.PH3(2)                        --------->YAB1          --------->MYB52(2)<---------AHL20(2)  --------->HSFB2a(2)                     ---------->DOF2   <----------DOF2        <---------AHL20(2)<---------------AGL15              --------->YAB1 <---------YAB1<---------TOE2(3)<----------DOF2 --------->MYB46(3) ------>DOF2 <---------ATHB12--------->ICU4<---------TOE1(3)--------->TOE2(3)------->GAMYB   aaagcttcaagttcaatgaaaaataaagataatgattgggacttttaggtttgtttgtgcttctttaattattttctaacaaccttttatagaaaaaaaa  2567300                                               --------->ANAC58                                               --------->ANAC46                                               =============================bZIP_DOF                                               --------->bZIP60(2)                                               <---------TGA1a                                               --------->ANAC58               --------->DAG2                                               --------->O2                  ========================                                               <---------O2                  ---------->DOF2                                               --------->TGA1a            <---------ANAC55(2)                                             <---------ALFIN1             --------->At4g35610                                            --------->ANAC46             --------->MYB59                                          --------->ANAC46              <-----------RAV1(2)             <---------ARR14(2)           --------->REM1(1)           <-----------HVH21       -------             --------->ARR14(2) <---------At4g35610              ---------->DOF2            <--------        <---------ZAT6      <-----------RAV1(1)=============================bZIP_DOF    <---------TOE2(3)      ----------->GT1    <-------TEIL    <---------ZAT14         ====================================   ctctagactagtgaaaattcggagagtttcatgttgctgcgactacaccacgtctctatctaaacagaaaagggtcaggtaaaggagattaatgtaacaa  2567400             <----------DOF2             <---------DAG2      --------->ALFIN1     ------->MYC3     <-------MYC2     <-------MYC3     ------->MYC2     <-------MYC4                                                                             -------     -------->ABF1                                                                            <------     ------->MYC4                                                                      --------->YAB1     <-------PIF5                                                                   --------->AHL20(2)     ------->PIF5                               <-----------GT1                     <--------ATHB1    ====================bZIP_DOF            <---------AHL20(1)                      --------->ATHB51    ====================bZIP_DOF            --------->AHL20(2)            --------->YAB1     <-------    --------->ANAC55(2)                     <---------AHL20(2)       --------->ZAT14<---------ICU4    --------->ANAC46                        --------->AHL20(1)       <---------ZAT2 <---------AHL20(1)    --------->O2                           --------->AHL20(2)        --------->At4g35610--------->AHL20(2)    <---------O2                    --------->ATHB12                 --------->ZAT2 --------->YAB1    --------->TGA1a                 <---------ICU4                   <---------At4g35610<---------AHL20(2)    <---------TGA1a  <-----------RAV1(1)   <---------AHL20(2)  <-----------GT1     --------->ICU4  <---------ALFIN1 <----------DOF2  --------->YAB1         --------->AHL20(2)      <---------ATHB12 ---------------->PIF3(2)          <---------ATHB12    <---------AHL20(2) <---------bZIP60(1)-------- =============bZIP_DOF             --------->ICU4      --------->AHL20(2) --------->bZIP60(1)<------- -->MYB46(3)<---------DAG2<------NtERF2<---------AHL20(2)  <---------AHL20(2)      <---------ATHB51*TSS ---GT1   ------>NtERF2  ------>NtERF2 --------->AHL20(2) <---------AHL20(2)   ------------>CBF   <-- =============bZIP_DOF ---------->ID1--------->TOE2(3)--------->AHL20(2)<-----------HVH21<---------AHL20(2)   tcgcacacgtggcacctttttctttgtcgccttccaaatcattaattaaatttccatttatttattttctctgctgtcatcaccaataattttaatttaa  2567500    <---------------AGL15                                                    <-----------RAV1(1)    --------------->AGL15                                            <---------MYB52(1)   ----------------->AG                                           ------>ZmHOX2a(2)                 -   ----------------->AGL2                                       <---------ARR11(3)                  =   ----------------->AGL1                                       --------->ARR14(2)              ----- <-----------GT1                                                <---------ARR14(2)             ------ -->AHL20(2)                                                    --------->ARR11(3)             ====== ---AHL20(2)                                                    --------->AGP1                <------ --AHL20(2)                                                     <---------AGP1<-------GAMYB  <------- ->AHL20(2)                                                    <---------CCA1(2)          <---------WOX13(1) --AHL20(1)                                                   ----------->ARR10         --------->ATHB12 -------ICU4    --------->YAB1                    ---------->DOF2<------ZmHOX2a(2)     <---------YAB1   tttttaccaaaaccagaatcaaaattttgaacggagaagaagattgaattcagaaaggaagaggcagatctgttattctctgttgaagtctgattgatct  2567600                                                            ----------->RAV1(2)                                                           ------>NtERF2                       <---------ZAT14                 --------->ARR14(2)          ----------->HVH21                      <----------DOF2                <---------MYB46(3)            ----------->TGA1           <---------ANAC58                         <---------DEAR3(1)           <---------At4g35610           <---------ANAC46                        <---------At4g35610    --------->WRKY12           <---------ANAC58                        <------NtERF2         --------->ALFIN1 ----->ZmHOX2a(2)--------->ALFIN1                 <---------ERF1  --------->MYB52(1) ======================HOX2a_HOX2a               <---------RAP2.3(3)   <---------ANAC58 ------>HVH21   <------ZmHOX2a(1)                <---------RRTF1(3)    <---------ANAC58 >ZmHOX2a(2)--------->LBD16                      <---------DEAR3(1)    <---------ANAC46 ======================HOX2a_HOX2a       <---------MYB46(3)--------->LBD16----------->HVH21     <---- ---At4g35610 --------->ALFIN1          --------->ALFIN1<---------ATERF1(1)      --------->At4g35610> --AGP1   <---------LBD16            <---------DEAR3(1)<---------ARR14(2)<------NtERF2  ---------->DOF2   gatcggagctattgcggaggaggggtttactgcaattgcacggtggtaatggctgcggttccgcctgaaaacggcgtggacggagatgacgaaagagagg  2567700                                                                       --------->ANAC46                                                                       --------->ANAC58                                                                       --------->ANAC58                                                                       ==============================                                                                       <---------O2                    <------ZmHOX2a(1)                                  <---------TGA1a              -                 <------ZmHOX2a(1)                                     --------->TGA1a              <            --------->ALFIN1  >>>>>>>>>TBF1                            --------->O2             <----          <---------TOE2(1)   ------------------------>ANAC81    <------ZmHOX2a(1)          <--------          <---------TOE1(1)>>>>>>>>>TBF1                         --------->ATERF1(1)        ---------        <------ZmHOX2a(1)------------------------>ANAC81       --------->ALFIN1             <--------       <----------ID1   >>>>>>>>>TBF1       --------->MYB52(1)<------ZmHOX2a(1)            --------->MYB55(2) --ZmHOX2a(1)  --------->ALFIN1     >>>>>>>>>TBF1 <---------At4g35610  --------->bZIP60(2) <---------MYB46(3) >>>>>>>>TBF1 <------ZmHOX2a(1)  >>>>>>>>>TBF1    --------->At4g35610<---------ALFIN1   <------ZmHOX2a(1)   aagaagaagaggacgaggaggaggaagaagaagaagaagaagaagagaacggagatgaggctgaggaggagccacgtctcaaatatcagaggatgggtgg  2567800                                                                           --------->ANAC46<XXXXXXXXX                                                                           --------->ANAC58--------->ARR14(2)                                                                           ----------->HVH21                                                                           --------->ANAC58<---------ARR11(1)                                                                         --------->ANAC46  <---------ARR14(2)                                                                        --------->TOE1(2) <---------ARR14(1)                                                                       --------->ANAC58   <---------CCA1(2)      ------>ZmHOX2a(1)                                               <---------ZAT18   <---------ANAC58     --------->TOE1(2)                                      ------>ZmHOX2a(2)       <---------ANAC58 ================MYC_MYB          =================================HOX2a_HOX2a      <---------ANAC58 -------->HSFB2a(1)               ------>ZmHOX2a(1)   <------ZmHOX2a(1)--------->ANAC58 <---------ANAC58 ---------HSFB2a(1)         <---------At4g35610       =============HOX2a_HOX2a  <---------SPL7 ------ --NtERF2                   --------->At4g35610   <---------ANAC46  <---------SPL7 --------------->AtSPL3 -ANAC58            <---------TOE2(3)      <-------GAMYB<---------YAB1--------->SPL7<---------ANAC46 >ALFIN1           --------->MYB52(1)     <-----------RAV1(1)      <------MYB83<---------DEAR3(2)   - -ANAC58 <-------GAMYB   <---------At4g35610  <---------At4g35610  <------MYB46(1)--------->SPL7   <-   caacgttcctgcgttgctatctaacgatgctgcttcctgcatcgctgttgctgcgaggatgatcgcgcttggtacgcacgacggtaccgtgcgtatcctc  2567900              --------->ANAC58          --------->GLK1(2)     <---------LBD16 <---------AHL20(2) --------->ATHB12                          <---------ANAC58 XXXXXXXXXXXMIR862-5P                      <---------ANAC46 >ZmHOX2a(1)<-----------RAV1(2)            <---------ANAC58 -------->AHL20(2)                        <---------LBD16                 <---------ZAT6 ---------DOF2--------->ANAC58         <---------GLK1(1)   --------------->AtSPL8             <------ZmHOX2a(1)   gatttattggggaatcaggcaagttttccattgatttttggaatttcgggtctatttcaacattgtacaagttttagtgtcaatttcaacattttaggag  2568000  Previous    Next  AGI:  At1g08190.1    Description:  vacuolar assembly protein, putative (VPS41). Identical to Vacuolar protein sorting-associated protein 41 homolog (VPS41) [Arabidopsis Thaliana] (GB:P93043;GB:Q9SGE1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36333.1); similar to Vacuolar protein sorting-associated protein 41 homolog (GB:P93231); similar to unnamed protein product [Vitis vinifera] (GB:CAO16729.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680); contains Range:  from: 2567499    to: 2573390    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version