Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       --------->ATHB51     <---------ICU4     --------->YAB1    <---------YAB1                               <-------TEIL    --------->ICU4                  --------->TOE1(3)                    --------->RAP2.6(2) ---------At4g35610                ------>ZmHOX2a(2)      <---------ANAC55(2)<------ZmHOX2a(2) -------->At4g35610        <---------YAB1 --------->TOE2(3)             <---------LBD16 ------>RAV1(1)    <---------AHL20(2)     --------->TOE1(3)     <----------ID1 -->MYB46(3)       --------->AHL20(2)------>ZmHOX2a(1)  --------->AHL20(2)--------->LBD16          -- -->DEAR3(2)      --------->AHL20(2)--------->TOE2(3)<---------ICU4 ---------->DOF2             <----   acagctataattgcaaaaaaaaaaattttaaaattgatccttaaccatagattcaaaattacttaaacaacaaagccggatcaaaaccgaaacacccata  2498400                       ---------->DOF2                 --------->LBD16             --------->ARR14(2)                    --------->ANAC58            <---------GLK1(1)                      --------->ANAC58 ------->ANAC46<---------LBD16            --------->ANAC58                                    <------ZmHOX2a(2) -----REM1(2)<---------ARR14(2)           --------->ANAC58                                  <------ZmHOX2a(1)   cacagaagaaatcgaaatccggctcaaaagaaaatcaaaaaatgaagcaattcaaggaaaatgcgataatacatacttacacagagaatggacaggatca  2498500                                 ------>ZmHOX2a(2)                                 ==============HOX2a_HOX2a                                 ===================================HOX2a_HOX2a                                <------ZmHOX2a(2)                   ------->TEIL ===============HOX2a_HOX2a                   <---------ARR11(1)                                                           -----                  <---------CCA1(2)     <------ZmHOX2a(1)                                       <----                  <---------GLK1(2)   <---------TOE1(2)                                       =======          <---------TOE1(3)     ====================================HOX2a_HOX2a               <------          <---------TOE2(3)    --------->ARR11(3)             ----------->GT1    --------->ARR11(3)   <---------WOX13(1)          <---------ARR11(3)            <------ZmHOX2a(1)<---------WOX13(1)-----   aattgatagattagggtttcgaatctcttatacgatctcgcaggactactgaagaaacactgaggagagaaaacgagccgattgatattgtttttctcag  2498600                                                                                                   <-                                                                                              <------                                                                                              <------                                                                                              -------              ------->GAMYB                                                                   <------             <---------MYB55(2)                                                               -------             <---------MYB52(2)                                                               -------             --------->MYB46(3)                                                               =======       --------->ANAC46                                                                       <------       --------->ANAC58                                                                       <------       --------->ANAC58                                                                       =======   --------->YAB1                                                    ================================ ---->At4g35610                                                    --------->YAB1     --------->CCA1(2) -----At4g35610                                          <----------DOF2       --------->TOE2(3)   <- ======================RAV                               ============================================ -----RAV1(2)<---------MYB111(2)                    --------->MYB52(1)      --------->REM1(1) ======= ------>GT1----------->RAV1(1)                      <---------ALFIN1 ---------->DOF2--------->AHL20(2)   gtgaattataagccaacaaacaaaaaaaaacttgttttgatatttggaagagcccaacgctttgttttatcaaaagcttcacctaaatatatgcatacgt  2498700                                   --------->AHL20(2)                             <------MYB83                             <------MYB46(1)                            <---------AtMYB61    <---------CCA1(2)       --------->MYB111(2)    ------>ZmHOX2a(1)       --------->MYB46(2) --------ANAC58             --------->MYB55(2) ---ANAC58                  <---------MYB46(3) ---ANAC58                  --------->MYB111(1) -->O2                     <---------MYB55(1) ---TGA1a                <------MYB46(1)                                                           -- -->ANAC55(2)            <------MYB83                                                    <----------- -->TGA1a  <---------YAB1<---------MYB46(3)                                         <---------AGP1 -- ===================================MYC_MYB                                         --------->ARR14(2) ---O2  <----------DOF2 <---------AtMYB61                                           <---------ARR11(3) ---ANAC55(2)          <---------MYB52(1)                                           <---------ARR14(2) =============================MYC_MYB                                               --------->ARR11(3) ===bZIP_DOF          <-------GAMYB<---------AHL20(2)                              <---------CCA1(2)< --------ANAC58      <---------MYB46(3)<-----------GT1                       XXXXXXXXXXXXXXXXXXXX>MIR865-5P ===bZIP_DOF         <-----------RAV1(1)                               --------->MYB59------>ZmHOX2a(2) ==================bZIP_DOF<--------P  --------->YAB1        *TSS    <---------MYB52(1)<---------YAB1   ggcttcctatcttttgattttgtctgttggtaggtgtttaattacaacatcccgtcttaatggtgtttttagttaggctgaatttggatcttattgtata  2498800                                                        --------->AHL20(2)                                                     --------->YAB1            --------->ZAT14             <---------YAB1  --------->YAB1            <---------ZAT14             <---------------AGL15             <----------ID1          --------------->AtSPL8     <-------TEIL --------->YAB1 ---------->DOF2         <---------ANAC46        --------->AHL20(2) <---------YAB1      --------->DAG2  <------------CBF            --------->YAB1   ----------->GT1  ------------------------>ANAC81 ------->TOE2(3)       <---------AHL20(2)--------->YAB1<---------------AGL15  --------->DAG2 -CBF   <---------DEAR3(1)   <---------YAB1 --------->YAB1  ---------->DOF2  ---------->DOF2 ------->YAB1       <---------AHL20(2)  ===============================MADS_MADS ---------YAB1      --------->AHL20(2)--------->YAB1--------->ICU4     ---------->DOF2   atcttattgggctgtgtaccatttttttattctcataaattcataatagtagtaataataaaaaaagaaaagaaaaaggaaaaggaagactattgtatgc  2498900                                    <-------TEIL                                 <------MYB46(1)                                 <------MYB83                                    <-------TEIL                                --------->MYB111(1)                           --------->LBD16                                --------->MYB59                              <---------TOE1(2)------>MYB83         ------>MYB46(1)        --------->MYB46(2)                           --------->LBD16  ------>MYB46(1)         ------>MYB83          <--------P                                   <------NtERF2   ------->GAMYB    <-----------GT1            <---------MYB55(1)                       <-----------HVH21<-----------GT1  --------->AHL20(2)          <---------MYB52(1)        --------->ARR11(3)  <---------LBD16--------->MYB46(3)   acaattaaaccaaatattgaacagagataaccagtaggtacatattgatgctcaagaagaactagtagaaaccatgtccccggttcagacttaaccaact  2499000                     ------>MYB83                     ------>MYB46(1)                   --------->AtMYB61           --------->YAB1                   <---------MYB46(2)         <---------ATHB12                   --------->MYB46(3)       --------->WOX13(1)                  --------->ANAC46       --------->ANAC58              --------->ANAC58           --------->ANAC58                                        ----              --------->ANAC58           --------->ANAC46                                        ----              --------->ANAC46       ------>MYB83--------->ANAC46                                ----            --------->ZAT6           ------>MYB46(1)                                  <----------DOF2         <---------REM1(2)         --------->AtMYB61                 <----------DOF2--------->At4g35610         --------->ZAT14           <---------MYB59             <---------YAB1       <---------At4g35610   caatgtctctcttcacactcaccaaaccaaaataaaaccaaaccagcaatcacagaacccattttcttattctttctgtcaaattcagctttgctctcca  2499100                                                                                          --------->LBD16                                                                                         --------->DEAR3(1)                                                                                     <---------ABI4(2)                                                                                     --------->ZAT14                                                                       --------->O2  <---------ZAT14        <---------DEAR3(1)                                             <---------O2 <---------ATERF1(1)     <---------SPL7                      ----------->HVH21             <---------TGA1a  <---------LBD16     ----------->HVH21        ----------->RAV1(1)             --------->ATHB12    ----------->RAV1(2) <-----------RAV1(2)      --------->HSFB2a(2)     <-----------GT1      --------->TGA1a<---------ALFIN1 ------->HVH21        <----------DOF2--------->At4g35610   --------->ANAC46     --------->ANAC58 ----->ANAC46        <---------ANAC58--------->ZAT2        --------->ANAC58     --------->ANAC58 ----->MYB46(3)      <---------ANAC58<---------At4g35610   --------->ANAC58  --------->ARR14(2)     -   cgaccaggggacggtttagtagggctttcgagcaccagtagctgagaccgagtcaccatacgagccattggagacgtctgatacgcctgcaccgggctaa  2499200                                                                       --------->ANAC58                                                                       --------->ANAC58           --------->GLK1(1)                                        --------->At4g35610         -----          <---------ARR14(2)                                        --------->ZAT2           ------>ZmHOX2a(1)          <---------ARR11(1)                                        <---------At4g35610<-------TEIL          <-----------ARR10                   <---------At4g35610   <---------ZAT2     --------->SPL7          --------->ARR14(2)                  --------->At4g35610 --------->SPL7     <---------MYB52(1)          ------->TEIL                        <---------ZAT2   <---------ANAC46     --------->LBD16         <---------CCA1(2)                 <---------ANAC58    <---------ANAC58    --------------->AtSPL3  --------->LBD16 ------->PIF5             <---------ANAC58    <---------ANAC58    --------------->AtSPL8 <---------LBD16  <-------PIF5     --------->At4g35610  --------->HSFB2a(2)       <---------LBD16 ---------->RAV1(2)                <---------At4g35610  <---------HSFB2a(2)     <---------SPL7-------   aaccctgggtcgaatctccacgagcagttgctctctgagccgaatgcgagctcatgctcgagaaggcgtaagctcgccctgatgtccggtacatcctcct  2499300  Previous    Next  AGI:  At1g08040.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G28310.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G28310.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21860.1); contains InterPro domain Protein of unknown function DUF707 (InterPro:IPR007877) Range:  from: 2495339    to: 2498761    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g08050.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G60710.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70517.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain von Willebrand factor, type A (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 2498833    to: 2501424    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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