Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <----------DOF2        ------->TEIL              <---------ANAC58       ----------->GT1                         <--- --------->YAB1                   <---------ANAC58     <-------GAMYB    --------->YAB1          <---- ---------ATHB12            --------->ATHB12     <---------ICU4  --------->AHL20(2)         <-------- ------>WOX13(1)     --------->ANAC46 --------------->AtSPL8     <---------AHL20(2)  ------>NtERF2---   caatcatatgcatttctttatccacaaaattgatttgcttattgtacttcatcatcccgttgtaaaatttataagcacaattttcgccaactatttattc  2476800                                                                       <---------At4g35610                                                                     <---------ANAC46                                                                    <---------ZAT2                                                                   <-----------RAV1(1)                                                                 <---------ZAT2                                                                 <---------At4g35610                                                                 --------->ZAT2 --------->ANAC58                                                                 --------->At4g35610                                                                <-----------RAV1(1)                                                              =================RAV                                  <---------ARR11(3)          <---------At4g35610                           <---------AHL20(2)                 --------->At4g35610  <---------ARR14(2)                          --------->AHL20(2)                  ----------->RAV1(2)  --------->ARR14(2)                      <---------AHL20(2)                      <---------ZAT2    --------->ANAC58          <---------At4g35610     --------->ARR11(3)        <-----------GT1 --------->ANAC58        --------->MYB46(3)<---------AHL20(2)              <-----------HVH21 <---------bZIP60(1) ------ANAC55(2)      --------->AHL20(2)  --------->YAB1 --------->ANAC46   --------->ANAC58 -----LBD16      --------->AHL20(2)  <----------DOF2     --------->ANAC58----------->HVH21 -AHL20(2)--------->At4g35610<---------TOE2(3)           --------->ANAC58----------->TGA1 ------>LBD16    <---------AHL20(2) ------>ZmHOX2a(2)<-----------GT1<---------At4g35610  <---------ALFIN1   cgcaaattgaacagctgattttatttaaattaatgtgatctttatcacaacaaattcacaagtcacctgctgctggtgacgcaagtatccccctctctgt  2476900                                                                     --------->YAB1                                                                  --------->AtMYB61                                                               --------->AtMYB61                                                               <---------ALFIN1                                                              --------->MYB46(3)                                                            <---------ALFIN1         --------->YAB1                                                            --------->DEAR3(1)      <---------YAB1                                                         <---------ALFIN1          <---------ARR11(3)                                                         --------->AtMYB61        --------->YAB1                                                         --------->DEAR3(1)      --------->ICU4              --------->WOX13(1)                        --------->MYB46(3)       <---------YAB1            <------ZmHOX2a(2)                         --------->AtMYB61        --------->YAB1            <---------YAB1                            --------->ANAC46         <---------ICU4           <---------ARR11(3)            ------->TEIL <---------ALFIN1<-----------TGA1 --------->At4g35610        <---------TOE1(2)        --------->YAB1      --------->MYB46(3)   <---------YAB1   <---------ARR11(3)           --------->ICU4     --------->YAB1--------->MYB46(3)--------->ARR11(3)   <-----------ARR10          ---------->DOF2<-----------GT1--------->AtMYB61 <---------ATHB12 ------   --------->ARR11(3)      --------->TOE2(3)<<<<<<<<<MYB98 --------->MYB46(3)------->TEIL    --------   tacaatatctcacgatcattcaattgtatccataaagatgatgtatgttactatcaccaccaccaccaccatcgtcatgaatcatgatcatcagacaacg  2477000                                         ----------->GT1            <--------ATHB1                                      --------->GLK1(2)             <---------ICU4                                      --------->ARR14(2)            -------->HAHB4              -----          --------->YAB1         --------->ANAC46                  <---------ATHB51         --------- --------->ANAC58                --------->ANAC58                  --------->ICU4         <---------ATHB12 --------->ANAC46                --------->ANAC58                  <---------YAB1         ----------- --------->ANAC58    <----------DOF2  <---------ARR14(2)         <---------ICU4      --------->TOE2(3) --->MYB46(3)        <---------------AGL15                       --------->YAB1 <----------DOF2------ ->MYB52(1)          --------------->AGL15                ----------->GT1       <---------DAG2<------   actacgaaaaaatcataagtctacttttattagacacacaaatctgtgaaaatggcgatttagttaataataattcgctcaactttttcttaatcaatca  2477100                                                                                                =====                                                                                                -----                   <---------ICU4                                                              <-----    <---------AHL20(2)                                                                         ======    --------->AHL20(2)                                                                         <----- ----->DOF2        --------->YAB1               <----------DOF2                                ------ >WOX13(1)        <---------YAB1        ---------->ID1                                        <------ ->CBF            --------->ICU4     <---------DAG2                                           ------- --->YAB1       --------->YAB1       <----------DOF2  *TSS     ------>NtERF2             --------->AtMYB61 ---ATHB12     --------->AHL20(2) <-----------GT1   --------->AtLEC2               <-----------GT1   aaggaataaaataacaaataataataagaccattttttacttttccccttctttatgcaaaattcggcctcttaattttcaaaattttcgacctccgatc  2477200                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                         --------->ARR14(2)                         --------->ARR11(3)       --------->At4g35610--------->GLK1(1)       <---------At4g35610<---------GLK1(1)   --------->ARR14(2)    <---------ARR11(3) ==============================HOX2a_HOX2a                         --------->At4g35610 ->ZmHOX2a(2)            <---------ARR14(2)                        <---------ZAT2              ------ -ZmHOX2a(2)            ==================================HOX2a_HOX2a                     --------->LBD16 ==============================HOX2a_HOX2a               <---------TOE1(3)               --------->DEAR3(1) ----GLK1(1)            <------ZmHOX2a(1)          ------>ZmHOX2a(2)                  <---------ALFIN1 --->GLK1(1)       <----------DOF2         --------->ZAT14         <---------At4g35610--------->AtMYB61 ---ARR14(2)     <---------YAB1            <---------ZAT14         --------->ZAT2    --------->MYB46(3) -->ARR14(2)   --------->YAB1         <----------DOF2    <---------TOE2(3)          ------>ZmHOX2a(1)   tcccatctccgcttccatcatctttaggatctctcaatctctttcttcactgatcgattagggttttcgagctgaaatcgatactcctccaccgcgaaga  2477300                                             <---------ARR11(3)                                      --------->ANAC58                                    ======================HOX2a_HOX2a                                    ------>ZmHOX2a(2)                                   <---------GLK1(1)                                   =======================HOX2a_HOX2a                                   --------->GLK1(1)                                   <------ZmHOX2a(2)                                  <---------AGP1                                  --------->ARR14(2)                                  <---------ARR11(3)                                  --------->ARR11(3)                                  <---------ARR14(3)                                  <-----------ARR10                                  --------->ARR14(3)                                  <---------ARR14(2)                                 <------NtERF2                                 <---------ARR14(1)                                 <---------CCA1(2)                                                 --                               <---------ANAC46                    <---------DEAR3(1)              --                               <---------ANAC58                <---------ZAT2                      --                     <---------TOE1(2)--------->ANAC58         --------->At4g35610        --------->ANAC46          <---------GLK1(2)    <---------ANAC58                <---------At4g35610        <---------ALFIN1          --------->ARR11(3)  <---------LBD16--------->ARR11(3)--------->ZAT2           <---------ALFIN1 ---->DOF2<---------ARR11(3)<-----------RAV1(1)    ------>ZmHOX2a(1)        <----------DOF2   ------>ZmHOX2a(1)   agcgattacctagatttttcttctaggtttctggcggatctcgccaagttctccttattctcttcagctacggcgaaactttctctagctccactcctcc  2477400            <---------HSFB2a(2)            --------->HSFB2a(2)                  --------->At4g35610             <---------ANAC58  --   ------>NtERF2                                 <-------GAMYB                   <---------ANAC58  <-  --------->DEAR3(1)                             <---------At4g35610   <---------ANAC46            -- ------->ANAC46                              <-----------HVH21    <---------ANAC58           -------- ------->ANAC58  <---------At4g35610        ------>ZmHOX2a(1)     <---------ANAC58           <------- ------->ANAC58  --------->At4g35610      ----------->RAV1(2)     <---------ANAC46  <-------TEIL   <-   ctcgccaccatgttttggaagctcacatctctctctgcatcatctcctgtgagttgaatttttagatgtcgtgttgtatgttagcgttcatcttgtctac  2477500                                                            <---------AHL20(2)                                                   <---------DAG2      --------->GLK1(1)                            <----------DOF2 ------->ARR14(2)                                 <---------ANAC58 --------GLK1(2)                              <----------DOF2                                     <-- ------->ARR11(3)       --------->ATHB12     <---------ANAC58                                     --- ->ETT(2)              <---------YAB1        <---------ANAC58   <---------AHL20(2)<---------GLK1(1) --ETT(2)  <----------DOF2       --------->GLK1(2)<---------ANAC58               --------->ARR14(2) --------ARR14(2)     <---------GLK1(2)   <---------MYB52(1)--------->AHL20(2)   <---------ARR14(2)   agatactgatatgctttagaattagattattggagtttctatccgttgctttgctttttcatataatttatgtcgaatttttggatttgctagatttcaa  2477600                                                                         ----------->GT1       --------->ATHB51                                               --------->ALFIN1       <---------ICU4                                                <-------PIF5       --------->ATHB12                                              ------->PIF5       -------->ATHB1<---------ANAC58                               --------->ZAT2      --------->ICU4 ----------->GT1                                <---------ZAT2      <---------ATHB51                              <----------DOF2 --------->At4g35610 -------AHL20(2)     <---------ANAC58          <----------DOF2    <-----------RAV1(2)               < ------>AHL20(2)     <---------ANAC46    <---------TOE2(3)  <---------YAB1             ---------->DOF2   ttttttgaattattgtctctgagtcgtgaattgttcatgtattgatgttctttccttttgttatgagcgcaggtggagataatattagacaaagaaaatt  2477700  Previous    Next  AGI:  At1g07990.1    Description:  SIT4 phosphatase-associated family protein. similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT2G28360.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT3G45190.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G30470.1); similar to unknown [Populus trichocarpa] (GB:ABK95109.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40415.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21852.1); contains InterPro domain SIT4 phosphatase-associated protein (InterPro:IPR007587) Range:  from: 2477154    to: 2483135    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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