Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <----------DOF2                                                                                         <---------ANAC58                                                                                    <---------ANAC58                                                                         --------------->AtSPL8                                                             --------->AHL20(2)     <---------ANAC46                                                             <---------AHL20(2)     <---------ANAC58                                                           --------->AHL20(2)   <---------ZAT14     - -------->ANAC58                                    --------->ANAC58     <---------------AtSPL8     - -------->ANAC58                                    --------->ANAC58     <---------ICU4  <---------ANAC58 >ZAT6              <-------TEIL                 ------>ZmHOX2a(1)      --------->ICU4   <---------ANAC46   actagcaattgatactcccaaattcatcaaaaaccatgtgaaattaagttcctcaagctaaatttatatgtctaattagtactataccgtggctttgttg  2474500                                                            --------->ARR14(2)                      -                                                            <---------ARR14(2)                      -                                                            --------->GLK1(2)                     ---                                                         --------->DEAR3(1)                       <--                                                       ------>NtERF2                             ----                                                       --------->LBD16                          -----                                                       --------->At4g35610                     <-----                                                   --------->ARR14(2)               -----------------                                     --------->ATHB51------>ZmHOX2a(2)             ==================                              --------->At4g35610<---------YAB1       --------->At4g35610      <-----                            <------ZmHOX2a(1)  --------->YAB1      <-------TEIL    ------>ZmHOX2a(2)-               ------>ZmHOX2a(1)     <---------ICU4<---------ARR14(2) <---------At4g35610 --------->At4g35610 -------->ANAC58            ================================HOX2a_HOX2a          <---------ARR11(3)<- -------->ANAC58     --------->GLK1(2)<-----------GT1--------->MYB46(3)          --------->ARR11(3)--   acaagaaatacagcatcctgcataatctgaggagcagaattatcgcttctcatgatccgccgaatccgattcatcggaaacttgatcttagcatcttccg  2474600                                                                                   <---------MYB52(1)                                                                                  <-------GAMYB                                                                                  --------->At5g28300                                                                                <------NtERF2 ------>NtERF2                                                                 ------>NtERF2 -------->RAP2.3(2)                                                           <---------DEAR3(1) -------->DEAR3(1)                                                         <---------O2<---------DAG2 --->NtERF2                                                                --------->TGA1a -------ATERF1(1)                                          <---------MYB52(1) --------->DEAR3(1) ----->ANAC46                                              --------->DOF5.7(2)--------->ANAC46 ---->LBD16                                               <-----------HVH21--------->O2<----------DOF2 ----ANAC58     --------->HSFB2a(2)                  <----------DOF2       <---------TGA1a ------>TaNAC69(2)                                   ================================bZIP_DOF =================HOX2a_HOX2a                   <---------ALFIN1           --------->ANAC46 ----ANAC58------>ZmHOX2a(1)                   --------->ZAT14             =======================bZIP_DOF -------->RAP2.3(3)                           ------>ZmHOX2a(1)            ===============MYC_MYB -----NtERF2    <---------HSFB2a(2)      --------->GLK1(1)<-------GAMYB    ========================== ------->RAP2.3(1)      <-----------GT1  <---------GLK1(1)===========================MYC_MYB       --   cgcctccatcgtcctcttctcgatttttactcgtcttcgtcggaattcctacactctttccgttacccctcttgctcacgacgccgttacttttcttcgc  2474700                                                                ------>NtERF2                                                                --------->LBD16                                                              <---------LBD16                                                         <---------CCA1(2)                                                     ----------->GT1                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                                 <---------ARR14(3)                                                 --------->ARR11(3)                             <----              <---------ANAC58                   <---------ARR11(3)                    --------->TOE2(3)        <---------YAB1                           --------->ARR14(3)              --------->TOE2(3) =========MYC_MYB          <-----------HVH21    --------->GLK1(1)      <<<<<<<<<TBF1<-----------GT1 -------->CDC5<---------ANAC58         <---------YAB1<---------ANAC55(2)         --------->YAB1 -----   ctcatcgcctcttattgcttcttccacagagtcactgctcgatgattctgagatctcgtaaatctccggcttcttcttcacaatgttaaccttgttcgac  2474800                           --------->ARR14(2)                           <---------ARR14(2)                          --------->DOF5.7(2)                        <---------ANAC58                        <---------ANAC46                        <---------ANAC58                       <-------TEIL                    <---------At4g35610                    <---------ZAT2                    --------->At4g35610                    --------->ZAT2                   --------->ARR14(2)                   <---------ARR14(2)         --------->ATHB12                 --------->LBD16            <----------DOF2                                        --               <---------LBD16              <---------DAG2                                     ------             --------->ARR14(2)      --------->AtMYB61                                         <-----             <---------ARR14(2)      <---------ALFIN1                                          ------          --------->HSFC1(1)        --------->MYB46(3)                                    <----------DOF2          <---------HSFC1(1)      ------>NtERF2                    ------>ZmHOX2a(1)<---------ANAC58 -----O2  <---------HSFB2a(2)    <---------ETT(1)                 <---------ALFIN1  <---------ANAC58 ---->O2  --------->HSFB2a(2)    --------->DEAR3(1)     ------>NtERF2            --------------------   gtcttcttcgttctggaaccggagctgcgtttactccgaccactcgctttattgacgacgacatcgctcctcgccttcttctccttgggtttctttgacg  2474900        --------->AHL20(2)     <---------AHL20(2)    --------->AHL20(2)  *TSS ---->NtERF2--------->HSFB2a(2)                           <---------CCA1(1) --->bZIP60(1)     <---------ZAT14             <---------AHL20(2) ----bZIP60(1)     --------->ZAT14      ----------->RAV1(2)   <---------AHL20(2) --->ANAC46 <---------HSFB2a(2)    <----------DOF2        <---------RVE1(1)                        -- ->WRI1 <---------AHL20(2)    <-----------GT1 --------->AHL20(2)       <----------DOF2<----------DOF2   acaccattaattttttagaactacagtatgtttcaccctttcgcctgaataaatcgatggatatttacatgggcttatttgtttgagccttttaggccca  2475000                                                                                        <----------DOF2                                                                            --------->ATHB12                                                                            -------->ATHB1                                                                            <---------ICU4                                                                            --------->ATHB51                                                                           --------->ICU4                                                                           <---------AHL20(2)                                                                           <---------ATHB51                                                                        --------->AHL20(2)                                                      ----------->TGA1  --------->AHL20(1)         ------------>CBF                             ----------->HVH21 <---------AHL20(1)      <---------YAB1                                <---------AtLEC2    <---------AHL20(2)  --------->YAB1   <------ZmHOX2a(1)     <------ZmHOX2a(1)             --------->AHL20(2) <---------YAB1  <---------TOE1(3)     <---------TOE2(3)--------->RAP2.6(3)--------->AHL20(2) ------->YAB1    <---------TOE2(3)--------->ICU4   <-------TEIL        <---------AHL20(2)          <-   tttatcatatgatcaatttaaggaatggacatggtgatgttgaggaatgaagatgcatgacgactacttcaaaataaattattggacatgctttcactgt  2475100                                                    --------->At5g28300                                                  <---------TOE2(3)                                            --------->AHL20(1)                                            <---------AHL20(1)                                            --------->AHL20(2)                                            <---------AHL20(2)                          --------->ANAC46          --------->TOE1(1)                <---------AHL20(2)                           --------->ANAC58          ----------->GT1                  --------->AHL20(2)                           --------->ANAC58       --------->ANAC46                 --------->AHL20(2)                 <---------TOE2(3)     <---------ALFIN1                  --------->AHL20(2)               <---------ARR11(3) --------ANAC46                        <---------AHL20(2)   ------->TEIL--------->ARR11(3)          <   ttcgcatacacctcgtaaaacattgtatagtttatggagaaataaataaattagggtaaatgtacttgggataagataatgtttttatacaagcatccaa  2475200                                                                                                 <---                                                                                                 ----                ------>NtERF2                                                                    ----                ----------->RAV1(1)                                                          --------               <---------ETT(1)                                                              <------NtERF2               --------->ANAC46                                 --------->ICU4              ---------               --------->LBD16                                  <-----------RAV1(1)         ---------              <---------HSFB2a(2)                  <------ZmHOX2a(1)                        ---------     <---------ARR11(3)   ---------->DOF2        --------->ANAC58                          --------->ZAT18     --------->ARR11(3)----------->GT1           <---------TOE2(3)                         <---------LBD16 -------TEIL  --------->HSFB2a(2)                --------->ANAC58                       --------->ALFIN1   aatacattatcttgttcccgacataatgtaaagaaattttagggattagataaggaagaatgggtaatgttggagtatgagacagaagaggtgtccgcaa  2475300           ------->MYC4           <-------MYC3           ------->MYC3     --------->ALFIN1           <-------MYC4    <-------MYC3           ------->PIF5    ------->MYC3           <-------MYC2    <-------MYC2          <---------ANAC55(2)          --------->O2     ------->MYC2          <---------TGA1a  <-------MYC4                                                             <     --------->AtMYB61     ------->MYC4                                                          <---    --------->MYB46(3)    <---------ANAC55(2)                            --------->ZAT2          ----    <---------MYB55(2)    --------->ANAC55(2)                            <---------ZAT2          <---  --------->ARR14(2)      <---------O2                                   --------->STY1(2)       ---- ------ZAT2<-------PIF5   --------->TGA1a                            <---------ANAC58            ---- ----->At4g35610     --------->MYB46(3)                          ------->MYC3                   <---- ----->ZAT2------->MYC2   --------->O2                           <-------MYC3                   <---- ->LBD16  --------->TGA1a <---------TGA1a                       <---------O2                    ----- >ANAC58  <---------O2   ------------>OsbHLH66              <---------AHL20(2)     <----------DOF2 <- >ANAC58  --------->ANAC55(2)                       ------------>CBF <---------ANAC58------------>CBF >ANAC46<---------ALFIN1<---------ALFIN1   ------->TEIL --------->ICU4   <---------STY1(2)  ---------   gctggaaccaccacgtgttatcaacaacacgtgtgagtctccatgaactctctctgcaatatttaaacgtggcctagctcgtgttctttcaatctccaat  2475400  Previous    Next  AGI:  At1g07980.1    Description:  histone-like transcription factor (CBF/NF-Y) family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO21826.1); similar to Os03g0852300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051922.1); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold; (InterPro:IPR009072) Range:  from: 2473162    to: 2474924    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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