Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <-----------GT1                                                                        ------>MYB83                                                                      <---------MYB46(2)                                                                      <---------MYB59                                                                     --------->ANAC55(2)                                                                     <---------ANAC55(2)                                                                   <-----------GT1                                                              --------->LBD16                                                             <---------HSFB2a(2)         <---------ARR14(2)                              <---------At4g35610         --------->ARR14(2)                              --------->At4g35610   ------>ZmHOX2a(1)                                  <---------At4g35610  --------->YAB1 --->ANAC58                                   <---------WOX13(1)<---------ICU4 --->ANAC58 --------->HSFB2a(2)      ------->TEIL    <-----------RAV1(1)------>MYB46(1)       ------- -At4g35610 --------->ANAC46 --------->YAB1 --------->ATHB12 --------->HSFB2a(2)              <------   caatcctagagtttccacaacttggtatcaagaagaatgaatcaattgattgtttatgctgctccagaattacctaatcacaattcaaatcgacaattaa  2465100                      --------->YAB1                     --------->MYB46(3)                     <---------ATHB12                    --------->ANAC46                <------ZmHOX2a(2)                                                       <---------ANAC46                --------->CCA1(2)                                                      <------NtERF2               <---------ARR11(3)                                                  <---------ZAT2               --------->ARR11(3)                                                  ----------->RAV1(2)               --------->AGP1                                     --------->YAB1   --------->ZAT2           ---------->DOF2                                       <------ZmHOX2a(2) <---------At4g35610       --------->TOE2(3) --------->MYB46(3)                  <------ZmHOX2a(2)     --------->At4g35610     <-------TEIL  --------->WOX13(1)                       --------->ARR14(2)   <-----------RAV1(2) -->AHL20(2)   --------->ARR14(2)                           <---------ARR14(2)--------->YAB1 ---AHL20(2)   <---------ARR14(2)                           --------->AGP1   <---------YAB1  --------   tatcacatacatcaaaagatccaatcaacaatccattgaacaatacaaaaatttcagaaccagatcgatcatatagtttatcatcagctggcatgaagaa  2465200                                                              <------ZmHOX2a(2)                                                        --------->AtMYB61                                                        ----------->RAV1(1)                                                     --------->ANAC46                          ------                                                   <-----------GT1             <------ZmHOX2a(2)                  --------->At5g28300   ----------->GT1--------->ANAC46       <---------ARR11(3)    <                 ----------->GT1   ==================================HOX2a_HOX2a        ---------->DOF2 --->GT1     --------->ZAT18       ------>ZmHOX2a(1) --------->ZAT6           --------->ARR11(3)    -   aaaaaacaatacgatggcactgtaaaactttgttctcctaaatcgataaaactttacaccacagatcagaaattccaaacgatctataaacaaagagaat  2465300                               <------ZmHOX2a(1)                               ==============================HOX2a_HOX2a                              <---------HSFB2a(1)                      --------->MYB52(1)                     --------->TOE1(2)                 ------->GAMYB--------->HSFC1(2)                <---------MYB52(2)                                ---------->DOF2                --------->MYB46(3)------>ZmHOX2a(2)        ------->GAMYB               ----------->TGA1 --->GLK1(2) <----------ID1   <---------HSFC1(2)      <------ZmHOX2a(2)      <------ZmHOX2a(2) ---------ARR14(2)  --------->MYB46(3)               --------->AGP1         --------->ARR14(2) ------ -------->ARR14(2)  <---------MYB52(2)      <-------TEIL----------->RAV1(1) <---------ARR14(2)-------   cgaatccaagagattacaacaaacaaacgagaaggatcgaaacagattcaacacagatcaacagaagagaaagaagcagatcgaagatggtgacgaaaaa  2465400                                                   --------->ANAC58                          --------->DAG2           --------->ANAC58           <---------GLK1(1)          ----------->TGA1              <---------YAB1   --------->TOE2(3)     ---------->DOF2 ----------->GT1      --------->DAG2 -------->P--------->GLK1(1)          ----------->HVH21      ---------->DOF2 --->DAG2 --------->ARR11(3)        <---------ANAC58   --------->ANAC58     <---------ARR14(2) --->DOF2 <---------ARR11(3)        <---------ANAC58   --------->ANAC58     --------->ARR14(2) ------   gcttacctcagagatatcgcaagagagtaaagcggctagggtgacgaaaaatgaagcaaggaataaagctatgtttgggattcgagtttatttatagtgg  2465500                                                                            --------->ARR14(2)                                                                           --------->HSFB2a(1)                                                                           <---------KAN4(1)                                                                           <---------HSFB2a(1)                                                                           --------->KAN4(1)                                                                           <----------TaMYB80                                                                          --------->ARR14(2)                                                                          <---------KAN4(2)                                                                          <---------ARR14(2)                                                                       --------->DEAR3(1)                                                                     --------->LBD16                                                                     ------>NtERF2                                                                    --------->ANAC46                                                                   <---------LBD16                             --------->YAB1                     <---------ARR14(2)                            >>>>>>>>>MYB98                      --------->ARR14(2)<----------DOF2                     <---------TOE1(3)                    ------->TEIL<------NtERF2     <----------DOF2    ---------->DOF2  <---------TOE2(3)                --------------->AtSPL3<---------ARR14(2) *TSS             <<<<<<<<<MYB98       <---------MYB52(1) --------->SPL7  ---------->TaMYB80 ----->GT1  --------->YAB1 <-----------GT1            --------------->AtSPL8--------->KAN4(2)   tgaatcgaaagaaataataagttagggtttaacataacatcgtttgccaaattacaaacgtacccctatcccgccgaatattctctttttctttgggcct  2465600                --------->YAB1           <---------ANAC58           <---------ANAC46           <---------ANAC58                                                                   -------          <------NtERF2        -------->P                                                    --------       <-------GAMYB        <---------MYB52(2)                                            -----------       <-----------HVH21 --------->ZAT14                                                  -----------      <---------DEAR3(2) <---------ZAT14                       --------->ANAC58           <----------      <------MYB83  ---------->DOF2                         --------->WRKY18(1)           -----------      <------MYB46(1)    <---------ZAT18              --------->YAB1         <---------YAB1<---------     <---------DREB2C(2) --------->ZAT18  --------->ATERF1(1)  --------->ANAC58        --------->WOX13(1)   tgaagagtcggtcgcgtttcataaaagtccactaacctcgaggggtcgctcttgtttcataagtcaagctaatttgaatttgatagtttcaatccaaaag  2465700         --------->AHL20(1)         --------->AHL20(2)         <---------AHL20(1)         <---------AHL20(2)    --------->AHL20(2)    <---------AHL20(2)                                                                             --    <---------YAB1                                                                                <--   <---------AHL20(1)                                                                           -----   --------->AHL20(2)                                                                           <----   --------->AHL20(1) --------->ANAC46                                                    --------->ANAC55(1) -->DAG2<---------AHL20(2)                                                                --------->ANAC58 -->DOF2--------->AHL20(2)       <---------ATHB12         <-----------GT1                 <---------ANAC55(2) ------>AG         <---------WRKY12            <---------ANAC58                           --------->ANAC55(2) ------>AGL3       <---------WRKY38(1)  ----------->GT1 --------->CCA1(2)                 --------->ANAC46 -------AGL2   <------MYB46(1)<---------AHL20(2)    <---------------------WRI1            --------->ANAC58 ------>AGL2   <------MYB83  --------->AHL20(2)<---------ANAC46     <---------TOE1(2)   <-----------GT1 ------AGL15  --------->MYB59<---------AHL20(2)<---------ANAC58<----------DOF2  ----------->GT1------   tggaatataattaaatttggttcaacgcgaattaaatcaagaaggttttacttggacgatatacactttgcaggttaagagaatgtaatttcacgtaatt  2465800                                        <---------WOX13(1)                                      <--------ATHB1                                      <---------ICU4                                      --------->ATHB12                                      -------->HAHB4                                     --------->ICU4 ------->YAB1                        <---------ATHB12                               <---------TOE2(3) -------YAB1              --------->AHL20(2)                                        <---------YAB1 ---->YAB1          ------->GAMYB    <---------YAB1                <---------At4g35610 -----ICU4       --------->MYB52(1) <---------TOE2(3)              --------->At4g35610       -------- --->ICU4     <------ZmHOX2a(1)    --------->YAB1  --------->TOE2(3)                <---------TOE1(3)   atcaaaacatacaagaggataacagcaaaaaaatcactaatgattgatgaaaacatcaaacgcttgttcatcagactggaacatttaagattgctaagta  2465900                                                                                          <---------MYB52(1)                                                                               ------>ZmHOX2a(1)                                                                              --------->TOE1(2)                                                                           --------->ARR14(2)                        <---------YAB1 --------->ARR14(2)                  <---------ARR14(2)                     <---------YAB1   <------ZmHOX2a(1)                   <---------CCA1(2)    ------               <------ZmHOX2a(1)  ---------->DOF2                         --------->GLK1(1)--------->ARR14(2) --->GT1      ----------->GT1 --------->ALFIN1       --------->WRKY38(1)  <---------GLK1(1)<---------ARR14(2)   atatgcgaattgagagaggaaatatgatcaatgtgggaaaggatagtccaaaacgttgtccatgacttcaaactgcatatccttcgatggccgtttcctc  2466000  Previous    Next  AGI:  At1g07940.1    Description:  elongation factor 1-alpha / EF-1-alpha. Identical to Elongation factor 1-alpha (A4) [Arabidopsis Thaliana] (GB:P13905); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT5G60390.1); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT1G07920.1); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT5G60390.3); similar to elongation factor-1 alpha [Nicotiana tabacum] (GB:BAA09709.1); similar to Elongation factor 1-alpha (EF-1-alpha) (Vitronectin-like adhesion protein 1) (PVN1) (GB:P43643); similar to elongation factor 1 alpha [Stevia rebaudiana] (GB:AAN7789 Range:  from: 2462950    to: 2465501    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07950.1    Description:  surfeit locus protein 5 family protein / SURF5 family protein. similar to surfeit locus protein 5 family protein / SURF5 family protein [Arabidopsis thaliana] (TAIR:AT1G16430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64970.1); contains InterPro domain Surfeit locus 5 (InterPro:IPR009332) Range:  from: 2465767    to: 2467019    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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