Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        ------>MYB46(1)                                                          <---------ANAC58 <---------ANAC58                                                          <---------ANAC58 <---------ANAC58                                                   <----------DOF2    ------>MYB83                                               --------->ALFIN1     --------->DEAR3(1)                                           <---------ANAC58         --------->DREB2C(2)             <          ---------->DOF2  <-----------HVH21 <-----------RAV1(1)    ----------->HVH21--------->At4g35610  --------->ANAC58         <---------MYB52(1)--------->ALFIN1       --------->MYB46(3)              <  --------->ANAC58    <-----------GT1      <---------ANAC58        --------->DEAR3(2)<---------At4g35610 ---GLK1(1)       <----------DOF2          <---------ANAC46<----------DOF2 <-------GAMYB            <   cagtaagaaactgaaagaaacttttctccgttcagagattagactgcgtgtggctgttttgctttgttcaccgactgggttgcattttgctgcgattgag  2429000                                                  <---------ZAT2                                                  --------->At4g35610                                                  <---------At4g35610                                                  --------->ZAT2                                             --------->O2                                             <---------TGA1a                                             <---------O2                                             --------->TGA1a                                          --------->DEAR3(1)                                          <---------DEAR3(1)                                         <---------------------WRI1                                         --------->RAP2.3(1)                                         <------NtERF2                                         --------->ATERF1(1)                          --------->GLK1(2)                                        <---------ATERF1(1)                          <---------GLK1(2)                                       <---------DEAR3(1)                            --------->ARR14(2)         --------->DAG2     <------MYB83<---------RAP2.3(1)            <---------At4g35610  ---------        ===============================================bZIP_DOF        --------->At4g35610  <--------        ---------->DOF2     <------MYB46(1)------>NtERF2      <------MYB46(1)      --------->ANAC58   ----------->GT1        <---------WOX13(1)<------NtERF2     ----------->GT1  --------->ANAC58 <-------GAMYB          --------->ATHB12------>NtERF2         --------->At4g35610  --------->ANAC58 ---------ANAC58       <---------YAB1 --------->ATERF1(1)     <------MYB83   <------ZmHOX2a(1) ---------ANAC46    --------->GLK1(2)<---------ATERF1(1)     <---------MYB46(3)--------->ANAC58    <- ---------ANAC58   <---------GLK1(2)----------->HVH21   <------ZmHOX2a(1) --------->At4g35610   -----   ttgcgttgtgaaaagttgtgagattctgattggtagagacgacggcgacgagagctgaggaggctggtgaaacagcagaggaagcaagaatcgctaaact  2429100                                                                                                   --                                                                                                -----                                                                                          -----------                           --------->GLK1(1)                                              <---------- >ZAT14                   xxxxxxxxxxxxxxxx>smallRNA(i)                                   ------------ -ZAT14   <---------CCA1(2)<---------GLK1(1)        <---------ARR11(3)                   ------------ --------TGA1a   --------->ANAC58            --------->ETT(2)                            ------------ ------>HVH21    --------->ANAC58          ------->TEIL           --------->YAB1   --------->MYB46(3)   gacatgagactcgtttctcacggccatggatttctcaagacgatgtatcgacattatctctccatcgttcatgacgctcactgtaaccaaaaccaaaatc  2429200                        <----------DOF2                     <-----------ARR10                                   --------->ARR14(2)                     --------->ARR11(3)                         --------->ALFIN1 -------->DOF2       <---------ARR11(3)                    --------->TOE1(2) ---->YAB1           --------->GLK1(2)                  <---------ARR14(2) ---->AGL15     --------->LBD16                         --------->ARR14(2) -----AGL15    <---------HSFB2a(2)                     <------ZmHOX2a(1) --------->GLK1(2) ----->AGL2    --------->HSFB2a(2)       --------->GLK1(2) --------->TOE2(2) ----->AGL1   <---------LBD16           <---------GLK1(2) ----------->RAV1(2)    ----------->GT1 ----->AGL3  <---------LBD16        ---------->DOF2  <---------TOE2(3)   <---------ARR14(2) ---------   agaaagactcattttctcgggaaaatcttttcttagattaaagaatcggagaaataaggaacctgagtgggagaaaatccagagggtgaagaaacagaga  2429300                       ------>ZmHOX2a(2)                                                            <                     ------->TEIL                                                                   <                <---------ANAC46                                                                    -                <---------ANAC58                                                                    -                <---------ANAC58             --------->ARR11(3)                                ------                <---------AtLEC2             <-----------GT1          ===============================HOX2a_HOX2a            --------->GLK1(1)                <---------ARR11(3)  ====================================HOX2a_HOX2a           --------->ARR14(2)               --------->RVE1(1)    ====================================           <---------ARR14(2)        <---------LBD16             ------>ZmHOX2a(1)             <-----         --------->LBD16            --------->MYB52(1)    --------->ALFIN1>>>>>>>>>>>>>>>>>LFY<------ZmHOX2a(2)      --------->MYB52(1)          <---------ARR14(2) <---------LBD16  ===============================    <------ZmHOX2a(2)--------->ARR14(2)     --------->CCA1(1)  <---------ANAC58              <-------   <-----------HVH21 <---------ARR14(2)    ---------->TaMYB80  <---------ANAC58              -------- -->GT1<---------LBD16<------ZmHOX2a(2)--------->LBD16 --------->LBD16------>ZmHOX2a(1)     <--------   aaaacgatcaccggaattgcatggatccaatactccgataccggaaatatccctctccgggtgtttcctgtccttctgccaatgtgagaagaagagatcg  2429400 ---------At4g35610 ---------ZAT2      ------>NtERF2 -------->ZAT2      --------->LBD16 -------->At4g35610 >>>>>>>>>>>>>>>>>LFY >ZmHOX2a(2)       --------->ANAC46 =HOX2a_HOX2a  <----------DOF2 ----LBD16  <---------ARR11(3)             <---------ANAC58 =HOX2a_HOX2a ------>ZmHOX2a(2)            <---------ANAC58 --ARR14(2) --------->ARR11(3)            <---------At4g35610 ->ARR14(2)--------->YAB1               <---------CCA1(2)  --------->YAB1       --------->CCA1(2) -GLK1(1)<---------KAN4(2)       <---------CCA1(2)      --------->YAB1        --------->CCA1(2)   ggagctgagagaatgatctttccgccattgttgtcttatcttgtagcttctcttccaagaatcacaaaaccagtagagagagataagagagaagagattt  2429500                                                                                --------->YAB1                                                       <---------O2            <---------YAB1                                          --------->TOE2(3)                ------->MYC3                                          --------->YAB1<---------LBD16    <-------MYC3                                          --------->TOE1(3)               <---------ANAC46                                        <---------ARR11(3)                <---------ANAC55(2)                                        --------->GLK1(2)                 <---------O2                                        --------->ARR11(3)                --------->TGA1a                                        <-----------ARR10 --------->LBD16 ===========================                <------MYB46(1)--------->RAP2.6(3)     --------->ANAC46   <---------TGA1a                <------MYB83  <-----------GT1--------->MYB52(1)           --------->ANAC46         <-               <---------TOE2(3) ------->GAMYB      <-------TEIL          --------->ANAC55(2)      --               --------->MYB59--------->MYB52(1)   <-----------HVH21      --------->O2  ------>ZmHOX2a(1)   gtgaagccttcttggattaggttttggttatttaacggcaaaaatcttaacgggttcacgcgggataagttgcatcacgtgatcatagtcctatttctat  2429600                                                                                       <---------AHL20(2)                                                                                     <-----------TBP                                                                                     --------->AHL20(2)                             <---------YAB1                                         --------->AHL20(1)                           <---------ICU4                                    ----------->GT1                          --------->ICU4                                     --------->LBD16                        <--------HAHB4                                      --------->HSFB2a(2)                        <---------ICU4                                      <---------HSFB2a(2)     <                        --------->YAB1                     <-----------GT1  ----------->GT1         -           <----------DOF2<---------YAB1              ------>ZmHOX2a(1)    <---------LBD16       ----     <-----------GT1   <---------YAB1                 ============================HOX2a_HOX2a    ---- =====================bZIP_DOF  ------->TEIL        --------->YAB1         ------>ZmHOX2a(2)    ----- --------ANAC55(2)     --------->ICU4         <---------ANAC55(2)  <---------DAG2   <---------AHL20(1) ------->ANAC55(2)   --------->YAB1           --------->ANAC55(2)  <----------DOF2 --------->AHL20(2)   tacatatttacgacttttgccattcatcattatgaatttttagacattacttaatcctaatttaccagactttttgatcgggaaaatatatatatgacca  2429700                                                                       --------->ANAC46 ---------ARR11(3)                                              <----------DOF2 -------->ARR11(3)       ------->TEIL                        ---------->ID1 -->MYB46(1)       <---------AHL20(1)                       <-----------GT1 -->MYB83          <---------ARR11(3)           <------------------------ANAC81                  ---- ---->MYB52(1)------------>CBF                ----------->GT1<-----------GT1                  -------   acgatatttgtttttgttcaatatatgtatatatgtcccaaaacaaaatggttttttttttttttccttttctacagaacagaaacattctacatacaaa  2429800                                                                                      --------->ICU4                                                                                   ----------------->AGL3                                                                                   ----------------->AGL2              <-----------GT1                     <------MYB83                   --------->ANAC58           --------->ARR11(3)             ----------->RAV1(2)            <---------ANAC58           <---------ARR11(3)            ------->TEIL         <-----------GT1 <---------REM1(1) ------>DOF2--------->CCA1(2) ----------->GT1     <------MYB46(1)        <---------ANAC58 --->DOF2--------->ICU4      ----------->GT1     <---------AtMYB61--------->LBD16--------->ANAC58   gaagccgagtcaagatttacatccacaatagatgttaaaaatgtacctgagttggttttatatttttccccaatttcttggtgaagccaaaattagattt  2429900  Previous    Next  AGI:  At1g07860.1    Description:  unknown protein Range:  from: 2428908    to: 2429428    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07870.1    Description:  protein kinase family protein. Identical to Probable serine/threonine-protein kinase RLCKVII [Arabidopsis Thaliana] (GB:Q9LQQ8); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G28590.1); similar to protein kinase 1 [Populus nigra] (GB:BAA94509.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 2429696    to: 2432031    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version