Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         ------->GAMYB           <---------ZAT6                                             --------->bZIP60(2)     <------MYB46(1)                                   --------->At5g28300     <------MYB83                                  --------->MYB52(1) --------->MYB46(3)        <----     <---------MYB46(3)                         --------->TOE2(3)     --------->ANAC58          -----   <--------P                                 ------>MYB83            --------->ANAC58 <---------ARR11(3) <-----------RAV1(1)           <----------DOF2------>MYB46(1)         --------->ANAC46 <---------GLK1(2) ------>MYC3                 ---------->ID1  ----------->RAV1(1)--------->ANAC58       --------->ARR11(3) -------MYC3             <----------DOF2   --------->MYB46(3)   --------->ANAC58     ----------->ARR10   cacatgttggtcagtgttgattcagagctttgtctttctcttaaaaccaacataaacggtaatggcaaggcaacgacactgatgaagtagattttggcag  2423700           <---------MYB46(3)        <------MYB83        <------MYB46(1)       <---------AtMYB61       --------->MYB111(1)     --------->CCA1(2)     --------->ARR14(1)                                                                             <    --------->ARR11(3)                                                                      <--------    --------->ARR11(1)                                                                     <---------YAB1    --------->ARR14(2)                                                                     --------->ICU4    <---------ARR14(2)             <----------DOF2                                    <---------At4g35610 -----At4g35610           ------>ZmHOX2a(1) <------ZmHOX2a(1)       <---------ZAT6    --------->At4g35610 ---->At4g35610         <-----------------AGL1            --------->YAB1             --------->MYB52(1)   atgaaagatttggtggtttagtcgagtcctatatgggctatatggaggagactgaaggaatcagaactcagtgttcgttctcaaactcaactgattattg  2423800                                  <---------YAB1                            --------->GLK1(2)                                                 -------    --------->ANAC58     --------->AHL20(2)         ---------->DOF2                         <--------    --------->ANAC58     <---------AHL20(2)    ---------->DOF2                         --------->ATHB12    --------->ANAC46--------->AHL20(2)     --------->YAB1                              -------->HAHB4  --------->MYB52(1)<---------AHL20(2)    <---------YAB1                              <---------YAB1 ---------MYB52(2) --------->AHL20(2)  <---------AHL20(2)                             --------->ICU4 -ICU4         --------->ICU4  <---------YAB1<---------YAB1--------->YAB1        --------->TOE2(3)---   tgactaacgacacagcaaaaattaaaataaaatctgattatttgattataaaagaaaagaatcatattgtcgaaactgaataaccaaaatgattaaacca  2423900                               <---------ANAC58                               <---------ANAC46                               <---------ANAC58                           <---------ANAC58                   <------------CBF                     <---------AHL20(2)                      --------->ATHB12                     --------->ATHB12                 --------->MYB46(3)                     --------->ATHB51     <---------ICU4    <---------YAB1                    --------->AHL20(2)    <--------HAHB4------>NtERF2                    <---------AHL20(1)   <---------YAB1<---------ALFIN1 ---------->DOF2        <-----    --------->TOE2(3)--------->AHL20(2)  --------->ICU4--------->DEAR3(1)                     ------- -->MYB46(3)--------->ZAT18<---------ANAC58  --------->AHL20(2)    <---------ZAT18    <---------ANAC46 ---GT1     <---------ZAT18<---------ANAC46  <---------AHL20(2)    --------->ZAT18   ------>NtERF2 ------>AtMYB61     <---------AHL20(2)   <---------ATHB51<-----------------AGL1     <---------PCF2   ccaaaaccatagattgcgctaaattatttgcttgcgtcttgcgataattaaacttagccacccttattgggccctaaagctaaatggggcctgaaatatg  2424000                                                                                                <----                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              =======                                                                                              <------                                                                                            <--------                                                                                            <------NtERF2                                                                                           --------->RAP2.6(2)                                                                                           <---------DEAR3(1)                                                                                           --------->DEAR3(1)                                                                                          --------->RAP2.3(1)                                                                                          <---------RAP2.6(2)                                                                                          --------->ATERF1(1)                                                                                         <---------ATERF1(1)                                                                                       <---------RAP2.6(2)                       <----------DOF2                                          <-----------GT1 -----                      --------->TOE2(3)                                    <---------AHL20(2)<------NtERF2               ------>ZmHOX2a(1)                   *TSS                   --------->AHL20(2)------>NtERF2        <---------ANAC58                           --------->GLK1(2)      <---------AHL20(2)<--------        <---------ANAC58                     --------->ETT(1)      <----------DOF2   <-----------RAV1(1)    --------->YAB1 <-----------GT1      <------------CBF           ================================== ----YAB1     --------->TOE1(3)       <---------YAB1              <---------ANAC58 ================== -->AHL20(1)  --------->TOE2(3)       <---------AHL20(2)          <---------ANAC58 <----------DOF2  <   ttagaatcatgcgtctccttaaaacctttttttttttgttttaattgtcggaaaatcagtagagagaggctttcgattaattttactttgtggccgccgt  2424100                                                                                                  ---                                                                                               <-----                                                                                              -------                                                                                           <---------ZAT14                                                                                           <---------SPL7                                                                                          <---------REM1(1)                                                                                         <-----------                                                                                         <-----------                                                                                        <------MYB83 <---------DAG2                                                                         <---------ANAC46 <----------DOF2                                                                        <------MYB46(1) -----MYB52(1)                                                                      --------->ARR11(1) -->TGA1a                                                                           --------->ARR14(2) -->O2                                                 <----------DOF2              <---------GLK1(2) ---TGA1a                                        <---------MYB46(3)                 <---------ARR14(2) ===========bZIP_DOF                           <-----------HVH21<---------ANAC58 --------->HSFB2a(2) ---O2                                         <---------MYB52(1)                <---------HSFB2a(2) -ATERF1(1)<---------ANAC58                   --------->LBD16   <---------ANAC58 ==================== ------>HVH21                      --------->ZAT18    <---------ANAC58           <---------------AGL15 -RAP2.6(3)<---------ANAC58        <---------ZAT14    <---------ANAC58          <-----------------AGL2 ===bZIP_DOF                       --------->ZAT14<---------ANAC58            <----------DOF2------->TEIL ===bZIP_DOF                       <---------ZAT18<---------ANAC58    <----------DOF2  <---------AtMYB61 ---------DAG2        <-----------HVH21     <---------LBD16 <<<<<<<<<TBF1   <---------At4g35610------   gacctttttcttagcgtcgctctctgtcaccttcaagttcactatctccggtgagtgctttcttcttcgtgtcttttccgcttctagatttggtgtaccg  2424200        --------->At4g35610        <---------At4g35610      --------->ZAT14 --------->MYB46(3) <---------MYB55(2)                                   --------->GLK1(1) ------>MYB46(3)                                      <---------GLK1(1) ----ETT(1)                                     <---------MYB52(1) -->DEAR3(2)               --------->MYB52(1)  <-------GAMYB ----AtSPL8    <---------AHL20(2)             <-----------RAV1(1) ----AtSPL3    --------->AHL20(2)           --------------->AGL15  <---------MYB46(3)         ------- ===========================================================MADS_MADS   <---------YAB1<---------YAB1 --->At1g77200<---------ATHB12        --------->MYB52(2)          <---------TOE2(3) <---------ANAC46   acaaccactgagctcaattaatcgagtcaaaacggagagatagttgctctgttgggaattcatcaattttggttagcattgggttatcgtgaatgtttgt  2424300                                             <------ZmHOX2a(1)                               <-------                                            --------->ICU4                         <---------At4g35610                   --------->ETT(2)    --------->ANAC58                            --------->At4g35610           <---------AHL20(2)          <---------ANAC55(2)                      <---------At4g35610        ----------->GT1           <------ZmHOX2a(1)         <----------DOF2 <----------DOF2  -------- -->MYB52(2)       <---------ETT(2)    --------->ANAC58  ------->TEIL<---------At4g35610   ----------   ttctatgaattagtaaattggtagacagtatttgtaggaaaacgtaaggattgaagatgaaacttttatttagctactctttggctgcttacttagatat  2424400                                                                                                  <--                                                                                                  ---                     <---------GLK1(2)                                                           ----                     <---------ICU4                <---------AHL20(2)                            ----                  --------->TOE1(3)                --------->AHL20(2)                            <---                  --------->TOE2(3)               --------->AHL20(2)                           ------                  --------->YAB1                  <---------AHL20(2)                           <-----               ------>MYB46(1)        --------->TOE2(3)                                        <-----     <---------MYB46(3)             <---------ARR11(3)                      <---------TOE2(3)  ------ --ARR11(3)    ------>MYB83         <-----------ARR10        <---------ANAC58                  ------ ->ARR11(3)  <---------MYB59        --------->ARR11(3)       <---------ANAC58                  <----- ->ARR10     --------->AtMYB61     <---------GLK1(2)     <----------DOF2 <---------YAB1 <---------At4g35610   tcaaacgttgttggaccaaaccataatctctgttccaaaatctcaacatgaattaaattcttttcgttctcagttactatggtttagtttatctgagtat  2424500 -------------AGL15 ------------>AGL15 ----->TOE2(3) ----->YAB1 --------------AGL3 --->ARR11(3) ------ARR10 ----ARR14(2)                                                                                  ------ --->ARR14(2)                            <---------YAB1                                        ------ --->GLK1(2)             --------->MYB52(2)                <-----------GT1                   -------- ----ARR11(3)          <--------P   <----------DOF2  <----------DOF2       <-----------HVH21---------   cttaatgtggtattcaaattcaagggttagtctctgaactttcatgtttgttttccttttttcacagacttatcttctgtcaagtactgaacaagaatca  2424600  Previous    Next  AGI:  At1g07830.1    Description:  ribosomal protein L29 family protein. similar to unknown [Populus trichocarpa] (GB:ABK93723.1); contains InterPro domain Ribosomal protein L47, mitochondrial; (InterPro:IPR010729); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) Range:  from: 2422238    to: 2423652    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g07840.1    Description:  leucine zipper factor-related. similar to EMB2777 (EMBRYO DEFECTIVE 2777) [Arabidopsis thaliana] (TAIR:AT2G43650.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69547.1); contains InterPro domain Small-subunit processome, Utp3; (InterPro:IPR007146) Range:  from: 2424051    to: 2426673    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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