Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->ARR11(3)                      --------->AHL20(2)             <---------ANAC58             <---------ANAC58             ----------->GT1                                                 ------->TEIL         <---------ANAC58--------->GLK1(2)                                <---------YAB1         <---------ANAC58<---------ARR11(3)                             <---------ICU4            ---       --------->ARR11(3)--------->ARR14(2)                             --------->YAB1           <---       <---------ARR11(3)<---------ARR14(2)                          --------->YAB1        --------->YAB1 ------>GAMYB<---------ANAC46  ---------->DOF2                   <-----------GT1  --------->AHL20(2) ------->MYB46(3)     <---------AHL20(2)                      --------->ARR14(2)  <---------AHL20(2)< --------MYB52(2)--------->AHL20(2)                     --------->ZAT18--------->ICU4 <---------AHL20(2)   aacaaacaagagcttgcgttaaaataaaatctgcaaagcactaaaaatttgatacaaatgcacagatttactcatcatgaatatttatttcaatgggaat  2409200                                                             ----------->GT1          <---------AHL20(2)                      --------->ARR11(3)      <----------DOF2                             <---------ARR11(3) ------>WOX13(1)                              ---------->DOF2--------->LBD16 ------AHL20(2)                  <---------HSFB2a(2)        --------->HSFB2a(2) ---------ATHB12                 --------->HSFB2a(2)        <---------HSFB2a(2)   aaatcaagcttttaaaatgtaaaccgaaatcacttatagaaattgaaacaaaggtcttgtgtccagaaaatacacacacagacaaaatagagctaagact  2409300                                                           <---------ANAC46                                              --------->TOE2(3)                                ---------->DOF2------>ZmHOX2a(1)                              --------->YAB1 ------>ZmHOX2a(2)              <----------ID1                             <---------YAB1 <------ZmHOX2a(2)            ------------------------>ANAC81                       <---------ZAT18     --------->ARR11(3)         ----------->GT1       ---------                       --------->ZAT14     <---------ARR11(3)        <---------------------WRI1     <         --------->DAG2<---------ZAT14     <---------ARR14(2)   --------->ANAC58     ---------->DOF2-        ---------->DOF2--------->ZAT18     --------->ARR14(2)   --------->ANAC58---------->DOF2     -   gactaattcgaaaagcgttcttaagttcactatgaaaagctctaagatcctaaattttctgatgtgaagcaagagaaaaaaacaaagtaaagaccaatta  2409400                                        --------->GLK1(2)                                       <---------GLK1(2)                                       --------->ARR14(2)                    --------->ATHB12                                       <---------ARR14(2)                   <---------YAB1       ----                                     ----------->ARR10                      <---------TOE2(3)    ----                                   <------ZmHOX2a(2)                    --------->TOE2(3)    --------         <---------ALFIN1         --------->ARR14(2)          <------ZmHOX2a(2)      <---------At4g35610 >WOX13(1)                        <---------ARR14(2)         <---------ARR11(3)      <---------ZAT2 ---------At4g35610              --------->At4g35610         --------->ARR11(3)      --------->At4g35610 -------->At4g35610      <---------HSFB2a(2)        --------->ZAT14     --------->TOE1(3)    -------- -------->ZAT2           --------->HSFB2a(2)        <---------ZAT14   ------->TEIL   --------->ZAT2   gcagctatctcacacttctgaatatttctataagcagatcagattctgaacgactatagtgaagatcaattgtaccttaagattgggagctcgagaggca  2409500                     --------->WOX13(1)                  --------->ANAC58        --------->MYB52(1)       ----------->TGA1                      --------->At4g35610       ----------->HVH21                     <---------At4g35610 ----->ANAC58     --------->ANAC58           <---------ZAT2                 ----------->GT1     ----- ----->ANAC58    --------->DAG2              --------->ZAT2     <---------DAG2                <------ ->ANAC58       ---------->DOF2        --------->DAG2           <----------DOF2            ---------- ->ANAC58 <---------ANAC46   <------ZmHOX2a(1)              ---------->ID1*TSS      ---------->DOF2   aggtactcagtgacggagaaaagcaattagaggaagaagagaaggtgagctagggttttcttatcgctttttatactagggaaaatcaaagaaaccaatt  2409600                          <-------TEIL                      --------->ANAC58                      --------->ANAC58               <---------ANAC46  ------->MYC3 <---------ANAC58                         --------->ANAC58  <-------MYC3 <---------ANAC58                     <-----------HVH21 ------>HVH21 ------>NtERF2                      <----------DOF2          ---------->DOF2        ---- ------CBF <---------At4g35610                <----------DOF2<------------CBF               --------- -->CBF    --------->At4g35610       ------------>CBF   --------->ANAC58 --------->YAB1  ------->TEIL   gacatgtgttatgcgctgcgtctcaagcttcatttcaggcccaatgggcttctttgtcacgaccattgaagcctatcaaagctataacttgaacctgtaa  2409700                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          <-----------ARR10                          <---------ARR14(2)                          --------->ARR14(2)                          <---------AGP1                          --------->ARR11(3)                                    ------>ZmHOX2a(2)                          <---------ARR11(3)                                  --------->ARR11(3)                          --------->AGP1                                      <---------ARR11(3)                         --------->At4g35610                                 --------->YAB1                         <---------CCA1(2)                                  <---------ATHB12                      <---------MYB52(1)                               <-----------HVH21                      <------NtERF2                                   --------->ANAC46                     <---------RAP2.6(3)                              --------->ANAC58                    --------->ATERF1(2)                               --------->bZIP60(2)                    <---------ATERF1(2)                               --------->ANAC55(1)                    --------->RAP2.3(2)                               --------->ANAC58                  --------->ZAT2                    <---------TOE2(3) --------->TGA1a                  --------->At4g35610              <-----------GT1    --------->O2         --------->GLK1(1)     --------->YAB1 --------->RAP2.3(3)      <---------AHL20(2)       <---------O2        <---------ARR11(3) ----->ICU4       <---------At4g35610        --------->AHL20(2)   <-----------GT1 ------>ZmHOX2a(1) -->GT1<---------YAB1<-----------HVH21    --------->YAB1          --------->CCA1(2)       --------->ARR11(3)   aaatgaatgatgtttctctcagccgtcagatctaatttgagcattgataaatttaacgaatgagaaatatacacgtcaatgatcctcgtgaagatttcta  2409800                                                                   --------->ANAC46                            <---------AHL20(2)                     --------->ANAC58                --                           --------->AHL20(2)                      --------->ANAC58       <---------ANAC55(2)               ---------->ID1 <---------ARR11(3)                 ---------->DOF2          <---------ANAC46             <---------MYB46(3)                           <-----------GT1                 <---------ANAC58             --------->MYB52(2)    ---------->DOF2        --------->YAB1                  <---------ANAC58           <---------MYB52(1) --------->ARR11(3)       --------->YAB1              <---------ARR11(3)   tccaatagaatacgtttgttccttctctataaaatctaaaagcctcgagtaaacctattatcaccatttaagcaatgcgaaacaagaccatttcgtaagc  2409900                            --------->AGP1              --------->ZAT14              --------->ZAT18              <---------ZAT14<------ZmHOX2a(2)              <---------ZAT18====================================HOX2a_HOX2a --------->AtLEC2           <---------ANAC58 <---------ARR11(3)                         <---------ZAT18     --------->TOE2(3)           <---------ANAC46 --------->ARR14(2)                         <---------ZAT14    <---------ANAC55(2)           <---------ANAC58 <---------ARR14(2)                         --------->ZAT14   <-------TEIL    <------ZmHOX2a(1)      --------->At4g35610                    --------->ZAT14    ----------->GT1    ================================HOX2a_HOX2a                   --------->ZAT18    --------->ANAC58 <-----------RAV1(2)       <---------At4g35610            <------ZmHOX2a(1)<-----------RAV1(2)   <--- ------->CCA1(2)           --------->GLK1(1)  ---------->DOF2     <---------ZAT14    --------->ANAC58   gatacaggagatgtcgtgtactatgaggcagatccaaaactcaatggacaaagaacatgaggacatactgcagtgaaccaggcagacaagttacataaat  2410000                                           <----------DOF2       <---------AHL20(2)                                          <---------DAG2        --------->AHL20(2)            --------->YAB1        <---------ANAC46            --------->TOE2(3)   ----------->GT1     ---------->ID1             <---------ANAC46         ---------->DOF2     ----------->RAV1(2) <---------ICU4       <----------DOF2---------->DOF2 --------->AHL20(2)<---------HSFB2a(2) ----TEIL  <---------ATHB12    <---------AtMYB61--------->HSFB2a(2)    --------->HSFB2a(2)      <----   tcatcttggcccattcattatgttctttttgttttggtgtaaagccttttcgagattaaaaaagcattaatttgtagaaacctgtggtaaaactctcgat  2410100  Previous    Next  AGI:  At1g07770.1    Description:  RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome. Identical to 40S ribosomal protein S15a-1 (RPS15AF) [Arabidopsis Thaliana] (GB:P42798;GB:Q7GD83); similar to 40S ribosomal protein S15A (RPS15aF) [Arabidopsis thaliana] (TAIR:AT5G59850.1); similar to unknown [Solanum tuberosum] (GB:ABA46758.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) Range:  from: 2408200    to: 2409574    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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