Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ----------->HVH21                                                          --------->At4g35610                                                        ------>ZmHOX2a(2)                                                        =================HOX2a_HOX2a                                                       <---------At4g35610                                                       <------ZmHOX2a(2)                                                       --------->GLK1(1)                                                       ==================HOX2a_HOX2a                                                      --------->ARR14(2)                                                      <---------ARR11(3)                                                      --------->ARR11(3)                                                      <---------ARR14(2)                                                    ----------->ARR10                                                ==============HOX2a_HOX2a                                                ===============HOX2a_HOX2a                                                <------ZmHOX2a(1)                     <---------AHL20(2)       <---------TOE2(3)      ----------->GT1                    --------->AHL20(2)  --------->AHL20(2)--------->ZAT2  --------->KAN4(2)  <------ZmHOX2a(1)      <---------TOE1(3)                 <---------AHL20(2)<---------At4g35610              <---------TOE2(3)      <---------TOE2(3)       <----------DOF2 <---------TOE1(3)   <------ZmHOX2a(1)      ---------->DOF2   ttttatctaaggtaatcgctgattttatatttcttttgctaattttttaaggatgggatctgctgacaggattgtatattctctaattttgtaaaggatt  2406500                                                  --------->ANAC46                                   <---------AHL20(2)                                  --------->AHL20(2)   --------->O2                                  <---------AHL20(2)   <---------O2                             <---------YAB1       --------->ANAC58                           --------->YAB1         --------->ANAC58                         <-------GAMYB           ------->GAMYB                             <------ZmHOX2a(1)                   --------->MYB46(3)        --------->TOE1(2)                           <---------TOE1(3)                  --------->At4g35610   <---------AHL20(2)                               <---------TOE2(3)  --------->LBD16----------->RAV1(1)   <---------AHL20(2)   <---------WOX13(1)        <---------YAB1 --------->HSFB2a(2)    ----------->GT1--------->AHL20(2)   <---------ANAC46       <---------MYB52(1) <---------HSFB2a(2)------->GAMYB--------->YAB1 --------->MYB46(3)                <-------GAMYB   tatccagaaatataagtagcaacagactgttataattttaatttaatccaacgagcaacgtgatggataagttgaaagaattgctgttattaaggattag  2406600                                     <---------YAB1                                     --------->ICU4                                   --------->ATHB51                                   -------->ATHB1                                   <---------AHL20(2)                                   -------->HAHB4                                   <---------ICU4                                   --------->YAB1                                   <--------HAHB4                                  --------->ICU4                            ---------->ID1 <---------CCA1(2)                        <---------ICU4    <---------AHL20(2)                     <---------AHL20(2)  --------->YAB1                    --------->AHL20(2)  <---------YAB1                                           ----                    <---------AHL20(1)--------->YAB1                                            <----                <---------AHL20(2)<---------ATHB12                                         <---------AHL20(1)              <---------ANAC55(2) <---------ATHB51                                      --------->AHL20(2)              --------->ANAC55(2) <---------YAB1            --------->YAB1            --------->AHL20(2)              ----------->GT1 <---------MYB59 <---------MYB59          --------->At4g35610 --------->AHL20(1)     ----------->GT1<---------AHL20(2)<---------ICU4       <-------TEIL<---------At4g35610--------->AHL20(2)   tttaacatggataaatatgtaattaattttggcctaattattattatatctaacttgcatattcataacgcttagatgacaaaaacaaaaaaatatatat  2406700                     --------->LBD16                    --------->LBD16                                                   ------->MYC3                   --------->LBD16                      --------->YAB1--------->At4g35610                  <---------LBD16                       --------->TOE2(3) ---------->DOF2 ----->YAB1  <-----------GT1                   <-----------HVH21      <---------At4g35610    -------- -----YAB1  <---------CCA1(2)             <---------ATHB12        <----------DOF2     <-------MYC3  -   cataacgcttagttatatccccccgagagaaaatacttaggcccatcagtgtcatttatcttaaggggctttagcagaaagctaatcacatgcccatgta  2406800                                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxx                                                                          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxxxx                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                           <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           --------->ANAC46--------->ICU4                                                           --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <---------ALFIN1 <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <---------REM1(2) <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                  <xxxxxxxxxxxxxxxsmallRNA(si3)                                                  <xxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxx                                                  <xxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxx                                                  <xxxxxxxxxxxxxxxsmallRNA(le3)       --------->ZAT14                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(l2) --------->GLK1(1)                                        --------->ARR14(2)<xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <---------ARR14(2)<xxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <xxxxxxxxxxxxxxxxsmallRNA(s)     ------->MYC3     <---------ZAT14                                   <xxxxxxxxxxxxxxxxsmallRNA(i)      <-------MYC3    <xxxxxxxxxxxxxxx                                   <---------ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  --------->ZAT2  <xxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxsmallRNA(i)                                  <---------ZAT2  <xxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <---------At4g35610  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  --------->At4g35610--------->GLK1(1)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <---------RAP2.6(2)--------->O2--------->RAP2.6(2)--------->ZAT6      ----------->GT1          <xxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------AHL20(2)         --------->ALFIN1    <-----------RAV1(2)<---------ANAC46<xxxxxxxxxxxxxxxxsmallRNA(s) --------->YAB1            --------->ALFIN1  <xxxxxxxxxxxxxxxxsmallRNA(s) <---------GLK1(1)       --- --->GT1  --------->AHL20(2) <---------RAP2.6(2)<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->AHL20(2)         <-----------RAV1(1) <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   aaataaaaatgaaaaaataaccaaaacaagtgtggctgctgggattcgagcccaggtctccacggccacaacgtggaattcttaccactaaactacagcc  2406900   <---------WOX13(1)  *TSS       <---------YAB1 xsmallRNA(se3) xsmallRNA(fl3)                                                                 --------->At4g35610 xxsmallRNA(s)                    --------->YAB1                          <------------CBF xxsmallRNA(i)        ----------->GT1 ------------>CBF        <---------AHL20(2)<---------At4g35610 xsmallRNA(s)--------->ICU4 <---------ICU4           <-----------GT1<-----------GT1 ------>O2 --------->YAB1  --------->ICU4         --------------->AtSPL8 <---------ICU4   <----------   acttgaatgactgtgatgatcagatagtaatatttatcacaacaatatgctattagtaccatattttttttttcaaaattgctgctaagttccattgcat  2407000                                                 <------MYB46(1)                                                 <---------MYB46(3)                                                 <------MYB83                                                --------->MYB111(2)                                                <---------AtMYB61                                                --------->MYB46(2)                                                <---------DEAR3(1)                                                --------->MYB111(1)                                                <---------MYB46(3)             --------->ARR11(3)                 --------->MYB55(2)             <---------ARR11(3)                <--------P            <---------CCA1(2)                  <---------MYB55(1)         --------->TOE2(3)                    <-------GAMYB     --------->WRKY12                        --------->ATHB12     ----------->HVH21                       --------->MYB55(2)   <---------At4g35610                       <---------MYB46(3)       <---------ANAC46   --------->At4g35610                --------->ATHB51   --------->YAB1 ----------->GT1   ----------->RAV1(2)               <---------AHL20(2)  --------->TOE2(3)      ----------->GT1   <---------ZAT2      <---------AHL20(2)   <---------YAB1       <---------ANAC58   --------->ZAT2     --------->AHL20(2)<---------WOX13(1)       <---------ANAC58 --CBF   <---------MYB59             <---------YAB1     ----------->GT1 --------->AtLEC2   tagacagctgacctaaatcttgtatttaatagcacttgtataattgatggttggtggaatgttaatttcgtttcatgtaaaattgtaaacacaaacacaa  2407100                                                           <----------DOF2                                                       ---------->ID1                                                      <-----------HVH21                                                     --------->ALFIN1                                                   <---------ANAC55(1)                                                   <---------O2                                                   <---------TGA1a                                                   --------->TGA1a                            <------                                                   --------->O2                          --------->MYB52(2)                                                   --------->ANAC55(2)                   --------->MYB46(2)                                                   <---------ANAC55(2)                   <---------MYB46(3)                                                   <---------ANAC58 --------->ZAT2       ----------->GT1                  <---------ARR14(2)               ===================bZIP_DOF    <---------bZIP60(2)                  --------->ARR14(2)               ==============================================MYC_MYB               --------->AHL20(2)                  <---------bZIP60(2)            <---------ANAC46             ----------->GT1--------->YAB1         <---------ANAC58 --------->At4g35610  --------->MYB111(1)             --------->ANAC58                      <---------ANAC46 <---------ZAT2<---------ANAC58  <             --------->ANAC58       --------->ZAT6<-----------------------TaNAC69(2)    <--------P --    <----------DOF2        <---------ATHB12--------->TOE2(3)   --------->ZAT6     <---------ANAC58 <-   aatgtgctttaaaacaagaaaatatgcaaatcatatcaactctaacatcagtaacgtgtcgctttccactagctggagacaatgacttgggtagttactt  2407200                                                                               <------MYB46(1)                                                                               <------MYB83                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                          ------>MYB46(1)                                                                          ------>MYB83                                                                        <---------MYB59--------->TOE1(1)                                                                        --------------->AGL15          <-------MYC2                                                  <---------------AGL15          ------->MYC3                      ------>MYB83               <-----------------AGL1          <-------MYC3                    --------->TOE2(3)            ----------------->AGL1         --------->ANAC58           --------->ANAC46                   ----------------->AGL2         --------->ANAC58           --------->ANAC58                   <-----------------AGL2        <-------TEIL               ------>MYB46(1)                     <-----------------AG       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------MYB59              ----------------->AG ---ANAC46------->MYC2             ------>MYB83                        <-----------------AGL3 ------ZmHOX2a(2)                 --------->MYB52(1)                   ----------------->AGL3 ------->ARR11(3)       --------->At4g35610 ------>MYB46(1)     --------->MYB52(1)     ----------->GT1 --------ARR11(3)   --------->ANAC46--------->ANAC58         --------->ANAC46 --------->MYB59   agatcataggcacgttttataaacgcagaagaataccaacgtaacctaattcccaagtgattcacaaaactgaaccaaatttggtaacctcgtaaaattg  2407300                                                                                              -------                                                                                          --------->ANAC58                                                                                       <---------ANAC58      ------>MYB46(1)                                          <---------DAG2     <-----------RAV1(1)      -------->P   <---------At4g35610                         <----------DOF2--------->ATHB12-------      ------>MYB83 --------->At4g35610                    <---------MYB59    <---------YAB1   -------     ----------->RAV1(1)     --------->YAB1            <------ZmHOX2a(1)  <----------DOF2 --------->ANAC58   --------->MYB46(3)       <---------ATHB12     ---------->DOF2    <-----------GT1    <---------ANAC58   acagaaccaacaagagttggaagcagtccaatgagaaacaactaggcgaagaaaagaggacctcactttttttctacttttgatttgtggcgaagcaacc  2407400  Previous    Next  AGI:  At1g07760.1    Description:  pre-tRNA. tRNA-His (anticodon: GTG) Range:  from: 2406831    to: 2406902    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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