Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->ICU4                                                        <---------------AGL15                                                        --------------->AGL15                                                     ------->GAMYB                                                   <---------At4g35610                                            --------->ARR14(2)                                            <---------ARR14(2)                                           --------->GLK1(1)                                           <---------GLK1(1)                                    <----                              <------ZmHOX2a(2) ------>ZmHOX2a(1)                               -----                              =========================HOX2a_HOX2a  --------->ANAC58            -----  <---------MYB52(1)         <---------ARR11(3)--------->TOE2(3)    --------->ANAC58      --------->MYB52(1) <-------GAMYB               --------->ARR11(3)--------->TOE1(3)  ---------->DOF2  --------->HSFB2a(1) ---------ANAC46     <-------TEIL--------->AtLEC2  --------->At4g35610             <---------ICU4   tgccgttgagaaaatgcagtaagttcgtagagatcatgcagaaggaaatcctcaactgcaattttgagaaaagccatcaacacaaacattccaaaccgaa  2402500                                                                               --------->GLK1(2)                                                                              <---------ARR14(2)                                                                   --------->ZAT14                                          --------->TOE1(3)        --------->ZAT18 --------->LBD16                                         --------->At4g35610       <---------ZAT18--------->HSFB2a(2)          <----------ID1         <---------ALFIN1  <------ZmHOX2a(2)          --------->ARR14(2)    - -----ARR14(2)    --------->ARR11(3)     <---------At4g35610       <---------ZAT14<---------HSFB2a(2) ---->ARR14(2)    <---------ARR11(3)  <---------MYB52(1)         --------->At4g35610  --------->GLK1(1) ---->GLK1(2)     --------->GLK1(2)  <----------DOF2          ---------->DOF2 <---------GLK1(2)<-----   tccgactctataactacaaaaatctaattcgtcgaacacctttagcttaaacgatcaaatatcaaacagcgcactatccagattccagaattcaaaactt  2402600                                                          ----------->RAV1(1)                                                          --------->AtMYB61                                                         --------->MYB46(3)              --------->At5g28300                        <---------MYB55(2)            --------->ZAT6                              -------->P     <---------ZAT18                                    ------>MYB46(1)                  --------->GLK1(1)     --------->ZAT14                                    ------>MYB83                 <------ZmHOX2a(1)     <---------ZAT14      --------->ANAC58             >>>>>>>>>>MYB80      --------->ANAC58     --------->ZAT18      --------->ANAC46       <---------At4g35610        --------->ANAC58 --------->DOF2           --------->ANAC58    <-------TEIL------->GAMYB     --------->ANAC46--------- ----------AGL15--------->ATHB12          <---------TOE1(2)       <---------MYB52(1)----------->GT1   tttaaagtgaacttacagtaattggactaagcaattgtgtttctcatgttcatatgccaaccacagtcgtttttttgcaggcaaacaggagaaatcaaat  2402700                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                                         <-------TEIL                                                                            <---------ARR11(3)                                                                            --------->ARR11(3)     <-                                                                           <---------GLK1(1)     ----                     <-------TEIL  <---------REM1(1)                       --------->GLK1(1)    <----     --------->CCA1(2)            --------->ARR11(3) --------->AHL20(2)<------NtERF2   --------->TOE1(2) >AHL20(2)          --------->CCA1(2)            ----------->GT1     <---------ANAC46  --------->TOE2(2)   agaatcgatacgagaaaacgagatacaagaagagaagatgtagaacacaacttgttaaaattccatgagaggcgcagaaatcttggaaacatgcgtcgat  2402800                                <------NtERF2                               ------>NtERF2<---------ALFIN1                               >>>>>>>>>>>>>>>>>LFY                              --------->RAP2.3(2)                              --------->ANAC58      <-----------GT1         --------->ANAC58        <---------ZAT18    <---------GLK1(1)        --------->RAP2.3(1)      --------->ZAT14   <---------GLK1(2)         --------->ATERF1(1)  <---------ALFIN1 --------WOX13(1)           <---------ATERF1(1)--------->AtMYB61 ----->ATHB12     <---------ARR11(3)        --------->REM1(1)          --------->ALFIN1 -----YAB1     <-----------RAV1(2)        <-----------GT1             *TSS                -----------   gattggattttccttctccagatgtttgagaggcgccattgttgttacacctccactgccctcaaattggaatgtggagaaggaagaacaaatccaatta  2402900               --------->ANAC58               --------->ANAC58               --------->ANAC46               <---------ARR14(2)                          --------->RVE1(1)             <-----------GT1                  --------->ARR14(2)                         <---------ARR11(3)       --------->MYB52(2)                  ------------>CBF          --------->ANAC58    --------->ARR11(3)     <---------MYB52(1)            --------->LBD16           <---------ARR14(2)     --------->ANAC58    <---------MYB52(1)            --------->LBD16        --------->LBD16            --------->LBD16 <---------LBD16                 <---------LBD16        --------->RAP2.6(2)         --------->ANAC58 ->CBF<-------TEIL     <---------GLK1(2) <-----------------AGL1      --------->ANAC58    --------->GLK1(2)   gcctccggttcgttttcacgacccagactcttaatcccggtttaccccaatctgaaaaccgcaaatagggccagccttgttttagcccgaaaatctctca  2403000                                           --------->DEAR3(2)                      --------->At4g35610                                          --------->ARR14(2)                     <---------WRKY38(1)                                          <---------ARR14(2)                    <<<<<<<<<<WRKY43                                          --------->SPL7                        <<<<<<<<<<WRKY38                                        --------->LBD16                         <<<<<<<<<<WRKY26   <-                                      ------>ZmHOX2a(2)                        <-----------HVH21   --                                      <---------LBD16                <-----------GT1--------->TOE2(3)      <-----------GT1                <------ZmHOX2a(2)              <-----------GT1<---------At4g35610    <---------AHL20(2)              --------->ARR14(2)             --------->AHL20(2)     --------->YAB1   --------->AHL20(2)               <---------ARR14(2) <----------DOF2     --------->TOE2(3)       <-   ttcaattttatcaggcccagagcttatatttttcaacggatccggaccggccctaaacttttagcccattttaacatccttggtcacctcaattttaaac  2403100                                           ------>ZmHOX2a(2)                                           =========================HOX2a_HOX2a                                          --------->GLK1(1)                                          <---------GLK1(1)                                          <------ZmHOX2a(2)                                          ==========================HOX2a_HOX2a                                         --------->AGP1                                      <---------HSFB2a(2)                           <---------AHL20(2)                       --------->AHL20(1)<---------ARR11(3)                       --------->AHL20(2)--------->ARR11(3)            <---------ANAC58            --                       <---------AHL20(1)--------->ARR14(2)            <---------ANAC58            <-                       <---------AHL20(2)<---------ARR14(2)          <-----------GT1             <---                      --------->AHL20(2) <---------AGP1          --------->AHL20(2)   <---------AHL20(2)            --------->TOE1(3)  --------->AHL20(2)                <---------AHL20(2)   <---------AHL20(1)            <---------MYB59--------->AHL20(2)                   --------->AHL20(2)    --------->AHL20(2)            --------->TOE2(3)  <---------AHL20(2)            ------>ZmHOX2a(1)        --------->AHL20(1)       <---------MYB52(1) --------->AHL20(2)              <-----------GT1            --------->AHL20(2) --------GLK1(2)      <---------AHL20(2)<---------CCA1(2) ---------->ID1     ---------->DOF2    ----- ------->ARR14(2)   ------>MYB46(1)   --------->HSFB2a(2)<-----------GT1<----------DOF2    <---------AHL20(2) --------ARR14(2)   ------>MYB83   <-----------GT1 <---------AHL20(2)<---------AHL20(2)    --------->AHL20(2)   cgatactcagttaacctaaaccaaataaatttataaatttccagatctcttattttttttttcctatttaattactttccaaagaaattttatttatatt  2403200                          --------->ICU4             <---------YAB1         <---------ARR11(3)         --------->ARR14(2)                                                                      <---         --------->ARR11(3)                                                                     <----         <---------ARR14(2)                                                                    ------         <---------GLK1(2)<---------ATHB12                                                    -------         --------->ARR14(3)                                                                 <--------         <---------ARR14(3)--------->ATHB12                                               --------->ZAT14 ------->ARR11(3)   <---------WOX13(1)                                                    <---------ZAT14 --------ARR11(3) --------->ATHB12                                                    ------->MYC3 ------AHL20(2) <---------WOX13(1)                              --------->HSFB2a(1)   <-------MYC3 ---->AHL20(2)--------->ATHB12 ----------->GT1         ------->TEIL        ----------->GT1--------->ZAT18   aaatctttgaagattttcattgattgaaatcatttgttaatatcaaacttctatatgtattttcgaacatttccaaactgtatatacacatgtgaactga  2403300                                                <----------DOF2                                 --------------->AGL15                                 <---------HSFB2a(2)                                 --------->HSFB2a(2)                   --------->ARR11(3)          <---------ANAC58                   <---------ARR11(3)          <---------ANAC58                 <---------AHL20(2)    --------->DAG2             --------->YAB1      <---------------AGL15                                         ------  <-------TEIL  <---------AHL20(2)   ---------->DOF2                                  ---------->DOF2 ------WOX13(1) --------->AHL20(2) ----------->TBP                     <---------HSFB2a(2)     <----- --------CBF <--------HAHB4     <-----------------AGL1         --------->TOE2(3)      =============== --->ATHB12 <---------YAB1      ----------------->AGL3        --------->At4g35610    --------->AHL20(2) -->ICU4  ------>ZmHOX2a(1)     <-----------------AGL3        <---------At4g35610    <---------AHL20(2) -At4g35610 <---------ATHB12    <-----------------AGL2     <---------MYB52(1)   ------------>CBF   ttgattcatttcctataattaaatctttccagtttctataaaaggcagtgctttcaaatttgttagcttaattccagtaatcaacaattaaagacagtcg  2403400  Previous    Next  AGI:  At1g07745.1    Description:  ATRAD51D/RAD51D/SSN1 (ARABIDOPSIS HOMOLOG OF RAD51 D); DNA binding. Identical to DNA repair protein RAD51 homolog 4 (RAD51D) [Arabidopsis Thaliana] (GB:Q9LQQ2;GB:Q5K4Q1); similar to ATRAD51B/RAD51B, recombinase [Arabidopsis thaliana] (TAIR:AT2G28560.1); similar to ATRAD51B/RAD51B [Arabidopsis thaliana] (TAIR:AT2G28560.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN80345.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21727.1); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553) Range:  from: 2400606    to: 2402870    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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