Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --  <----------DOF2                                                                                  -- -------ANAC55(2)                                                                         --------->ATHB51 ------>TGA1a                                                                             <---------ICU4 -------TGA1a        --------->ANAC46                                                     <---------AHL20(2) -------O2           --------->ANAC58                                                     --------->AHL20(2) ------>ANAC55(2)    --------->ANAC58                                                     <--------ATHB1 ------>ANAC58       <---------ALFIN1                   <---------DAG2                   <---------YAB1 ------>O2   ----------->RAV1(1)                    --------->LBD16      <---------YAB1  --------->ICU4 ------>ANAC58  ------->GAMYB          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)           --------->YAB1 -----HVH21 --------->MYB46(3)   --------->YAB1 <-----------GT1  --------------->AGL15<---------YAB1   acgtctttattccaacaacacacacacatctcttagcataaaacacatattttccccaatttttctgccatatatatgattttagaccataataatttca  2338900                                                                                         --------->ANAC46                     --------->ZAT2                                                      --------->ANAC58                     --------->At4g35610                                          <-----------GT1                     <---------At4g35610                                        <---------DAG2                 ----------->RAV1(1)                                      --------->ANAC46                 <---------ALFIN1                                         --------->ANAC58                --------->MYB46(3)                    --------->ANAC58    --------->ANAC58       ----              --------->PCF2                          --------->ANAC58   --------->HSFB2a(2)    -----             <---------WRKY18(1)       --------->At4g35610         --------->ARR11(3)    --------->ANAC58      <---------At5g28300         ------>ZmHOX2a(2) <---------ALFIN1     <---------HSFB2a(2)    <---- --------->RAV1(1)   <---------ZAT2    <---------At4g35610    <---------REM1(1) <----------DOF2------ ---------->AtMYB77<---------ALFIN1<---------ALFIN1<---------ZAT18 <---------ARR11(3)  <---------ALFIN1   tcaacagttacagtttgacccacagctgcagtttgatccacagctacagttgtcgcactccttgttgtagttcttctcgcaactttaccacacacaaatt  2339000                                                            <---------At4g35610                                                           ------->TEIL                                                         <-------TEIL                                                        --------->ANAC58                                                       ------->MYC3                                                       <-------MYC2                                                    ------->GAMYB                                                    <---------ALFIN1                                                   --------->MYB46(3)                            <---------YAB1        -------->P--------->At4g35610            <---------AHL20(2)                   <-----------GT1            --------->AHL20(2)          --------->ICU4 <-------MYC3              <---------ARR14(2) ----->WOX13(1)        --------->AHL20(2)        --------->WOX13(1)              --------->ARR14(2) ---->AHL20(2)         <---------AHL20(2)    --------->WOX13(1)                 <------ZmHOX2a(1) -----AHL20(2)        --------->ICU4   <---------TOE2(3)--------->ANAC58--------->ARR14(2) --->AHL20(2)    ----------->GT1      ---------->DOF2  ------->MYC2     <---------ARR14(2)   aatcaaacaaacaaaaaattagtaattaatatgatgagattaaagattaatcaaccacatgcatctgatcagcatatatacaggataggcccgaagtgtt  2339100                                                                                              -------                                                                                   --------------->AtSPL8                                                                                   <---------------AtSPL8     ---------->DOF2                             --------->YAB1       ----------->GT1       --------- ------->TEIL           <----------DOF2    --------->YAB1    --------->YAB1   <---------AHL20(2)   ttgaatctaaagtaaacaaaactaatcttttgtgtctattcacaaacacaattgtaaacgaagtcataagaagagtttattgaattttgtaccatgaagc  2339200                                                                                                <xxxx                                                                                                -----                                                                                          -----------                                                                                      --------->ATERF1(1)                                             --------->GLK1(2)                        <------ZmHOX2a(1)                                 ---------->DOF2                                   <------ZmHOX2a(1)                          --------->AHL20(2) <-----------ARR10                  <-----------RAV1(2)                          <---------AHL20(2) <---------ARR14(2)                 ===================== >TEIL           <---------ARR14(2)          --------->ARR14(2)         <---------ALFIN1  <---------ALFIN1 ->DOF2          --------->ARR14(2)         <---------GLK1(2)        <-----------GT1--------->ALFIN1   tcgaactacatagtctacatatatgcatataaatgtaaagaagagagaatctaggggtttacctgcaagagtcaccacatttgcaggaggagccacatcc  2339300       --------->At4g35610              <-----------GT1      <---------ARR14(2)              <---------WOX13(1)      --------->ARR14(2)            --------->ATHB12      --------->GLK1(2)           <---------WOX13(1)                     <----------DOF2 xxxxxxxxxxxxsmallRNA(s)         <------------CBF                   --------->YAB1 ------->AtMYB77                --------->ATHB12           <<<<<<<<<TBF1<---------ANAC58            - >RAV1(1)                      <---------YAB1           <<<<<<<<<TBF1   <---------ANAC58*TSS--------- =RAV<---------GLK1(2)       <----------DOF2<------------CBF       <---------YAB1      --------->MYB46(3)   acagttagaatctgccatttctcttacttctctttgattgattaactattgtagtttcttcttcttcttatgatgcttttgtgatttcaaccaatgggaa  2339400                                                  ------->PIF5                                                  <-------PIF5                                                  <-------MYC4                                                  -------->ABF1                                                  <-------MYC3                                                  ------->MYC3                            <-------TEIL          ------->MYC2                           --------->GLK1(2)      <-------MYC2                           --------->ARR14(1)     ------->MYC4                       <---------ARR14(2)                           --------->CCA1(2)     --------->ANAC55(2)              --------->ANAC55(2)                ---------->DOF2                  --------->O2                     <---------ANAC46          --------->HSFB2a(2)                    <---------TGA1a                  <---------ANAC55(2)          <---------HSFB2a(2)          --------->ZAT18                            <---------ANAC58        <---------AHL20(2)--------->ARR14(2)     --------->ANAC46                 <---------ANAC55(1)    --------------->AGL15 --------->ARR11(1)     <---------O2       --------->LBD16  --------->ARR14(2)    <---------------AGL15 <---------ARR14(2)     --------->TGA1a   --------->HSFB2a(2)   ----------------->AGL3 <---------GLK1(2)--------->AtMYB61       --------->ANAC46  ------->TEIL -------->ZAT18 ===========================================bZIP_DOF<---------HSFB2a(2)  ----------->HVH21 >YAB1<-----------TBP   ----------->ARR10 --------->ANAC46        <---------LBD16 <---------ANAC58---   tggccactatttatagaagaaagagagagattcggattatgtccaccatacacgtggcattttctatttccgcaagttttagttacgtatatgacattga  2339500                                                         <---------AHL20(2)                                            <---------DAG2         --------->AHL20(1)                                            --------------->AGL15  <---------AHL20(1)                                            <----------DOF2        --------->AHL20(2)                                            =========================================================                                           <---------ANAC58        <---------AHL20(2)                                           <---------ANAC58       --------->AHL20(2)                                        <---------WOX13(1)   --------->TOE2(3)                                 --------->ATHB12       <---------AHL20(2)                                <---------AHL20(2)      --------->AHL20(2)           --------->ARR11(3)   --------->AHL20(2)      <---------AHL20(1)         --------->ANAC58   --------->CCA1(2)           --------->AHL20(1)                      <----         --------->ANAC58  <---------ARR11(3)       <---------AHL20(2)            --------->TOE2(3)       --------->CCA1(2)   --------->ARR11(3)      --------->AHL20(2)   <-----------GT1         <---- ------->DOF2  ----------->GT1  <---------YAB1  --------->AHL20(2)<---------AHL20(2)           <-----   caaagtaagataagaaattgtatatatgagatatataattggattgctttttatataatataatctaaataaatttacgaataacatcaacttgcccatc  2339600                                                <---------TOE2(3)                                              <---------AHL20(2)         <---------YAB1              ---------->DOF2        <---------TOE2(3)          --------->ANAC58   <---------------AGL15           --------->ANAC58  <---------AHL20(2)          --------------------   --------------->AGL15 <---------At4g35610 <---------AHL20(2)             ------->GAMYB ==================MADS_MADS<-------TEIL     --------->AHL20(1)          ----------->RAV1(1) -----ICU4               --------->ZAT2      --------->AHL20(2)          --------->MYB52(1) ----HAHB4               --------->At4g35610 <---------AHL20(1)      --------->ANAC58 ----ATHB12              <---------ZAT2----------->GT1               --------->ANAC58   attttctatttatgttagatttgttccagcttcattcaagaaagtaatttaatgttttattgagttttagcaagacaacagagtatcaaacaaactaata  2339700                                                                                               ------                                                                                              -------                      <---------ANAC55(2)                                                   ------>NtERF2                   <---------ARR14(2)                                                      ------->GAMYB          -------->ATHB1                                                                   --------->DEAR3(1)          --------->ATHB12                                                                 --------->RAP2.6(2)          <---------ICU4                       --------->ANAC58                           --------->ATERF1(1)          --------->ATHB51                     --------->ANAC58                           --------->DEAR3(2)         <---------AHL20(2)                    --------->ANAC55(1)                       <---------ATERF1(1)         --------->ICU4                     <---------REM1(2)                            <---------At4g35610         --------->AHL20(2)               <---------SPL7     <---------MYB52(2)          <------NtERF2         <---------ATHB51      <----------ID1  --------->ANAC46                          --------->At4g35610   --------->TOE2(3)  ----------->GT1   --------------->AtSPL8                           --------->ZAT2  <----------ID1   --------->ARR14(2)   <---------------AtSPL8   --------->YAB1     --------->ANAC46-  ----------->GT1  --------->GLK1(2)    --------------->AtSPL3  <-----------------AGL1   <---------ZAT2 ---->ANAC81    <---------ANAC46    ---------->DOF2     ----------->GT1       --------->YAB1---------   gaaaacgtcaaattattggcgaatatgtaaaaaaaaacaaaagtcgtacacgcaagaagagtaactatcgcaattggcaattgtaaacggcagccgacca  2339800  Previous    Next  AGI:  At1g07590.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G15480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21656.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2336520    to: 2339388    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07600.1    Description:  MT1A (METALLOTHIONEIN 1A). Identical to Metallothionein-like protein 1A (MT1A) [Arabidopsis Thaliana] (GB:P43392); contains InterPro domain Mollusc metallothionein, family 2; (InterPro:IPR001008) Range:  from: 2338901    to: 2339318    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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