Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ANAC58                     --------->ZAT2                                                      --------->ANAC46                     <---------At4g35610                                          <-----------GT1                     <---------ZAT2                                             <---------DAG2                 <---------ALFIN1                                         --------->ANAC58                 ----------->RAV1(1)                                      --------->ANAC46                --------->MYB46(3)                    --------->ANAC58    --------->ANAC58       ----              --------->PCF2           --------->At4g35610         <---------ARR11(3)    --------->ANAC58             <---------WRKY18(1)       <---------At4g35610    <---------REM1(1) <----------DOF2 <----      <---------At5g28300         ------>ZmHOX2a(2)   --------->ANAC58   <---------HSFB2a(2)    ----- --------->RAV1(1)   --------->At4g35610            <---------ALFIN1     --------->HSFB2a(2)   ------ ---------->AtMYB77<---------ALFIN1<---------ALFIN1<---------ZAT18 --------->ARR11(3)  <---------ALFIN1   tcaacagttacagtttgacccacagctgcagtttgatccacagctacagttgtcgcactccttgttgtagttcttctcgcaactttaccacacacaaatt  2339000                                                            --------->At4g35610                                                           ------->TEIL                                                         <-------TEIL                                                        --------->ANAC58                                                       ------->MYC2                                                       <-------MYC2                                                    ------->GAMYB                                                    <---------ALFIN1                                                   --------->MYB46(3)                            <---------YAB1        -------->P<---------At4g35610            <---------AHL20(2)                   --------->WOX13(1)            --------->AHL20(2)          --------->ICU4 ------->MYC3              <---------ARR14(2) ----->WOX13(1)        --------->AHL20(2)        <-----------GT1                 --------->ARR14(2) -----AHL20(2)         <---------AHL20(2)    --------->WOX13(1)                 <------ZmHOX2a(1) ---->AHL20(2)        --------->ICU4   <---------TOE2(3)--------->ANAC58--------->ARR14(2) --->AHL20(2)    ----------->GT1      ---------->DOF2  <-------MYC3     <---------ARR14(2)   aatcaaacaaacaaaaaattagtaattaatatgatgagattaaagattaatcaaccacatgcatctgatcagcatatatacaggataggcccgaagtgtt  2339100                                                                                              -------                                                                                   --------------->AtSPL8                                                                                   <---------------AtSPL8     ---------->DOF2                             --------->YAB1       ----------->GT1       --------- ------->TEIL           <----------DOF2    --------->YAB1    --------->YAB1   <---------AHL20(2)   ttgaatctaaagtaaacaaaactaatcttttgtgtctattcacaaacacaattgtaaacgaagtcataagaagagtttattgaattttgtaccatgaagc  2339200                                                                                                -----                                                                                                <xxxx                                                                                          <---------ALFIN1                                                                                      --------->ATERF1(1)                                             <---------ARR14(2)                       <------ZmHOX2a(1)                                 ---------->DOF2                                   <------ZmHOX2a(1)                          <---------AHL20(2) --------->GLK1(2)                  =====================                          --------->AHL20(2) <-----------ARR10                  <-----------RAV1(2) >TEIL           --------->ARR14(2)          --------->ARR14(2)         <---------ALFIN1  ----------- ->DOF2          <---------ARR14(2)         <---------GLK1(2)        <-----------GT1--------->ALFIN1   tcgaactacatagtctacatatatgcatataaatgtaaagaagagagaatctaggggtttacctgcaagagtcaccacatttgcaggaggagccacatcc  2339300       --------->At4g35610              <-----------GT1      <---------ARR14(2)              <---------WOX13(1)      --------->GLK1(2)             --------->ATHB12      --------->ARR14(2)          <---------WOX13(1)                     <----------DOF2 ------->AtMYB77                 <------------CBF                   --------->YAB1 xxxxxxxxxxxxsmallRNA(s)        --------->ATHB12           <<<<<<<<<TBF1<---------ANAC58            - =RAV<---------GLK1(2)         <---------YAB1           <<<<<<<<<TBF1   <---------ANAC58*TSS--------- >RAV1(1)                    <----------DOF2<------------CBF       <---------YAB1      --------->MYB46(3)   acagttagaatctgccatttctcttacttctctttgattgattaactattgtagtttcttcttcttcttatgatgcttttgtgatttcaaccaatgggaa  2339400                                                  <-------MYC4                                                  -------->ABF1                                                  ------->MYC4                                                  ------->PIF5                                                  ------->MYC3                                                  <-------PIF5                            <-------TEIL          <-------MYC3                           --------->ARR14(1)     <-------MYC2                           --------->CCA1(2)      ------->MYC2                       --------->ARR14(2)                           --------->GLK1(2)     <---------O2                     <---------ANAC58                ===========================================bZIP_DOF               <---------ANAC55(2)          --------->HSFB2a(2)                    --------->O2                     <---------ANAC55(1)          <---------HSFB2a(2)                    --------->ANAC46                 --------->ANAC55(2)        <---------AHL20(2)--------->ARR14(2)     --------->TGA1a                  <---------ANAC46    --------------->AGL15 <---------ARR14(2)     <---------TGA1a   <---------HSFB2a(2)    <---------------AGL15 <---------GLK1(2)--------->AtMYB61       --------->HSFB2a(2)  ----------->HVH21   ----------------->AGL3 --------->ARR11(1)     --------->ANAC55(2)--------->LBD16  ------->TEIL -------->ZAT18 ---------->DOF2        --------->ZAT18             --------->ANAC46  <---------ARR14(2) >YAB1<-----------TBP   ----------->ARR10 --------->ANAC46        <---------LBD16 <---------ANAC58---   tggccactatttatagaagaaagagagagattcggattatgtccaccatacacgtggcattttctatttccgcaagttttagttacgtatatgacattga  2339500                                                         <---------AHL20(2)                                            <---------DAG2         --------->AHL20(1)                                            <----------DOF2        <---------AHL20(1)                                            =========================================================                                            --------------->AGL15  <---------AHL20(2)                                           <---------ANAC58        --------->AHL20(2)                                           <---------ANAC58       <---------AHL20(2)                                        <---------WOX13(1)   --------->TOE2(3)                                 --------->ATHB12       <---------AHL20(1)                                <---------AHL20(2)      --------->AHL20(2)           --------->ARR11(3)   --------->AHL20(2)      <---------AHL20(2)         --------->ANAC58   --------->CCA1(2)           --------->AHL20(1)                      <----         --------->ANAC58  --------->ARR11(3)       <---------AHL20(2)            --------->TOE2(3)       --------->CCA1(2)   <---------ARR11(3)      --------->AHL20(2)   <-----------GT1         <---- ------->DOF2  ----------->GT1  <---------YAB1  --------->AHL20(2)--------->AHL20(2)           <-----   caaagtaagataagaaattgtatatatgagatatataattggattgctttttatataatataatctaaataaatttacgaataacatcaacttgcccatc  2339600                                                <---------TOE2(3)                                              <---------AHL20(2)         <---------YAB1              ---------->DOF2        <---------TOE2(3)          --------->ANAC58   --------------->AGL15           --------->ANAC58  <---------AHL20(2)          --------------------   <---------------AGL15 <---------ZAT2      --------->AHL20(1)             ------->GAMYB ==================MADS_MADS<-------TEIL     <---------AHL20(2)          --------->MYB52(1) -----ICU4               --------->At4g35610 --------->AHL20(2)          ----------->RAV1(1) ----HAHB4               <---------At4g35610 <---------AHL20(1)      --------->ANAC58 ----ATHB12              --------->ZAT2----------->GT1               --------->ANAC58   attttctatttatgttagatttgttccagcttcattcaagaaagtaatttaatgttttattgagttttagcaagacaacagagtatcaaacaaactaata  2339700                                                                                               ------                                                                                              -------                      ----------->GT1                                                       ------>NtERF2                   --------->ARR14(2)                                                      --------->RAP2.6(2)          --------->ATHB12                                                                 --------->DEAR3(1)          -------->ATHB1                                                                   ------->GAMYB          <---------ICU4                       --------->ANAC58                           --------->ATERF1(1)          --------->ATHB51                     --------->ANAC55(1)                        --------->DEAR3(2)         <---------AHL20(2)                    --------->ANAC58                          --------->ZAT2         --------->ICU4                     <---------REM1(2)                            <---------ZAT2         --------->AHL20(2)             --------------->AtSPL3                           --------->At4g35610         <---------ATHB51      <----------ID1  --------->ANAC46                          <---------ATERF1(1)   --------->TOE2(3)  <---------ANAC55(2) <---------SPL7     <---------MYB52(2)          <------NtERF2  ----------->GT1  --------->GLK1(2)    --------------->AtSPL8   --------->YAB1     --------->ANAC46-  <----------ID1   <---------ARR14(2)   <---------------AtSPL8  <-----------------AGL1   <---------At4g35610 ---->ANAC81    <---------ANAC46    ---------->DOF2     ----------->GT1       --------->YAB1---------   gaaaacgtcaaattattggcgaatatgtaaaaaaaaacaaaagtcgtacacgcaagaagagtaactatcgcaattggcaattgtaaacggcagccgacca  2339800                                                                                         ----------->GT1                                                                                         <---------ANAC55(2)                                                                                         --------->ANAC55(2)                                                                                       <---------ICU4                                                                                       --------->YAB1                                                                         --------->AHL20(2)                                                                         <---------AHL20(2)         - --->AtMYB61                                 <----------DOF2    --------->TOE2(3)     <---------ATHB12 ---------->AGL3                 ------>ZmHOX2a(1)             ----------->GT1      --------->WOX13(1) --------->DOF2                 --------->TOE2(3)    ----------->GT1  <---------ICU4--------->YAB1--- >ORA47(1)            <----------DOF2     <-----------GT1  --------->AHL20(2) ----------->GT1  ------   aaaaaagaggcatgcttcatgcctcttttcatttccttactatattacttttattttgaaaaaaaatgttaatatttatatcgtattaatcatgtaataa  2339900  Previous    Next  AGI:  At1g07590.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G15480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21656.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2336520    to: 2339388    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07600.1    Description:  MT1A (METALLOTHIONEIN 1A). Identical to Metallothionein-like protein 1A (MT1A) [Arabidopsis Thaliana] (GB:P43392); contains InterPro domain Mollusc metallothionein, family 2; (InterPro:IPR001008) Range:  from: 2338901    to: 2339318    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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