Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <---------YAB1                                                             --------->AHL20(2)            <---------GLK1(2)                                                             <---------AHL20(2)    --------->DREB2C(2)                                                --------->YAB1    <---------AHL20(2)----------->RAV1(1)       --------->ZAT14                       <---------HSFB2a(2) --------->AHL20(2)<----------ID1 -------PCF2                                 --------->HSFB2a(2)<---------YAB1    --------->DEAR3(2) ------>PCF2    <---------CCA1(2)   <---------ARR11(3)  <---------TOE2(3)     <------ZmHOX2a(1)<----- ------>PCF5  <---------CCA1(2)     --------->ARR11(3) <-----------GT1  --------->LBD16---------->DOF2   ggcccgttctatactcgtatatcgtccacaagttttgaggtcttcttcgataagaattaacatattattaaatccagagaggagaccgacaaagattgtc  2334400                                                                              <----------DOF2                                                                              <---------DAG2                                                          --------->YAB1    ------>NtERF2                                                         <---------ATHB12--------->ZAT2                                <---------TOE2(3)   --------->TOE2(3)    <---------ZAT2                        <---------ARR11(3)    --------->ANAC58           <---------At4g35610                 ------>ZmHOX2a(1)            --------->ANAC58           --------->At4g35610          <--------P    --------->ARR11(3)    --------->ANAC46          <-----------RAV1(1)        <---------MYB46(3) <----------DOF2  --------->MYB52(1)      <---------GLK1(2) ----YAB1<-------GAMYB <---------CCA1(2)  <---------MYB52(2)       <---------At4g35610             <-   attgactcgatggttagtcctacatatatcttttaagaaaattgactaacgcaacttcaataatcttacagatgctgctgccttatgtatggatttgaat  2334500                                                             --------->YAB1                                                             <---------ICU4                                                             <--------ATHB1                                                            <---------ATHB51                             <---------YAB1                 <---------ATHB12                    --------->ZAT14                         --------->ICU4                         <-                   <---------DAG2      <---------YAB1     --------->YAB1                           <-       ----------->GT1    --------->ICU4               ----------->RAV1(1)                        <-- --------YAB1      <----------DOF2<-----------GT1   <------ZmHOX2a(1)          <----------DOF2    <--   tatgctcacgagttaaaaacactttacacttattattcactataatttctctaaggacaacaataatgcctcattgttgagcttttcttcgccttgtatt  2334600                                                                                 <---------AHL20(2)                                                                              <---------ARR14(2)                                                                  <---------RVE1(1)                                                                  <---------CCA1(1)          <---------YAB1                                         <---------ARR11(3)    ------>ZmHOX2a(1)         >>>>>>>>>>>>>>>>>LFY                                    --------->ARR11(3)<-----------GT1        <-----------GT1                                      =================================HOX2a_HOX2a ---------DOF2                 <----------DOF2        <---------YAB1       --------->ETT(1) --------DAG2              <-----------GT1   <-----------HVH21   <---------GLK1(2)<-----------GT1 -------ANAC58     ----------->GT1          ------->GAMYB<---------YAB1<---------AtMYB61 -------ANAC58   ---------->DOF2         --------->MYB52(1)  ------>ZmHOX2a(2)--------->ARR14(2)    -   gcttttttttttaccattgtaaagtttatttgcctttctaacttaactgtcaaattttgatgatcgagattttttggtcggattttatcctctcacaaat  2334700                                                                                          --------->DOF5.7(2)                                                                                          --------->At5g28300                                                                                         ----------->GT1                                                                                    --------->CCA1(2)                                                                                   --------->ARR11(3)                 --------->YAB1                                                    <---------AHL20(1)         <---------WOX13(1)                                                       <---------------AGL15       --------->ATHB12          <---------TOE2(3)                              --------->AHL20(2)      <---------YAB1          <---------ATHB51                                --------->AHL20(2)      <---------AHL20(2)   <---------------AGL15         --------->DAG2    --------->AHL20(2)  <-----   --------->ARR14(2)      --------------->AGL15        ---------->DOF2    <---------AHL20(2)  <-----   <---------ARR14(2)     ========================================================================MADS_MADS -------->DEAR3(1)        <-----------------AGL3<---------TOE2(3)      --------->LBD16  --------->ANAC46   cgccgaatttgattgctattcatgaaattcaaattatggaaacttgagttgagatagaaaaagtttccaaacccgaataaaataatatatacggtaactt  2334800                                      <---------ZAT18                                   xxxxxxxxxxxxxxxx>smallRNA(se3)                           <-----------RAV1(2)                        --------->At4g35610                        <xxxxxxxxxxxxxxxxsmallRNA(i)                        <---------At4g35610                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    <---------REM1(1) --------->ZAT18                    xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                    xxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                    xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                    xxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                   *TSS------->TEIL---------->DOF2                   xxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                   xxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         --------->At4g35610                   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              --------->GLK1(1)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                         --------->ANAC46                   xxxxxxxxxxxxxxxxx>smallRNA(se3)                            --------->ANAC58                   xxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxx>smallRNA(s)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               ------>ZmHOX2a(2)                   xxxxxxxxxxxxxxx>smallRNA(si3)                      xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            <---------LBD16  ------->TEIL                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <---------ANAC46--------->LBD16                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------TOE1(1)<---------ALFIN1                  xxxxxxxxxxxxxxxx>smallRNA(fl3)              <-------TEIL   <---------LBD16                  xxxxxxxxxxxxxxxx>smallRNA(le3)             --------->CCA1(2)--------->ANAC58                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->ALFIN1--------->ANAC46                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   <---------SPL7 xxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   xxxxxxxxxxxxxxxx>smallRNA(si3)                  xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxx>smallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxx>smallRNA(se3)   ------------>CBFxxxxxxxxxxxxxxxx>smallRNA(si3) <---------ANAC58  --------->ARR14(2)  <-----------GT1 xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxx>smallRNA(le3) ----DAG2         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxx>smallRNA(s) -----DOF2   --------->ALFIN1<---------At4g35610  <---------ANAC58  <---------ARR14(2)              <   tatttaacaatgcaagtaggggatgtagctcagatggtagagcgctcgcttagcatgcgagaggtacggggatcgataccccgcatctccatcttagcat  2334900          <---------AHL20(2)                  <----------DOF2                                     ---          --------->AHL20(2)             <---------MYB52(1)                                   -------   <---------TOE2(3)                --------->GLK1(2)              <---------YAB1            XXXXXXXX <---------AHL20(2)                <---------GLK1(2)<<<<<<<<<<<<<<<<<LFY                --------->At5g28300 ---------AHL20(2)    <-----------GT1  <---------YAB1          --------->ARR11(3)      ----------->GT1   tttttaatgtttttaaatgtgtttttactcttaaacaaattctgttagctttgaaaacaatggaagattatgatggagatgtggacatgcggtgataaaa  2335000                                                                                                  <--                                                                                                <----                                                                  ----------->GT1           ---------                                                                 <---------TOE1(3)          <--------       --------->ARR11(3)                                  <---------AHL20(2)            --------->ARR11(3)       <---------ARR11(3)                              <---------AHL20(2)              <---------TOE2(3) ------->DOF2          --------->YAB1          <---------YAB1    <---------TOE2(3)     <---------TOE1(3) --->DOF2 <----------DOF2                      --------->ICU4    --------->MYB59    --------->AHL20(2) XXXXXXXXXXX>MIR156H   ----------->GT1<-------TEIL    <---------AHL20(2) ----------->GT1 <---------ARR11(3)   gaaagagaacatctttgagtagcaattgtaaattgagaaatacgttgttatgattttttattttttttaggtaaaatgtgaaaaaatttaagattttatt  2335100                                                                                     <---------MYB52(1)                                                                         <---------CCA1(1)     <-----                                                                         <---------GLK1(1)   --------                                                                         <---------RVE1(1)  ---------                                                                       ==================HOX2a_HOX2a                                                                     <---------TOE2(3) --------->YAB1                                                             --------->YAB1       ------>ZmHOX2a(2)                                                           ------>MYB83=================HOX2a_HOX2a                                                           ------>MYB46(1)       <------ZmHOX2a(2)                                                         <---------MYB59<---------ARR11(3)  <-------- -------YAB1                             ---------->DOF2 ------->GAMYB <------ZmHOX2a(1)  <---------- -------GT1                           <---------YAB1     --------->AtMYB61      --------->ARR14(2) >AHL20(2)                         <---------AHL20(2)   --------->MYB46(3)      <---------ARR14(2) -AHL20(2)               <---------TOE2(3)            --------->WOX13(1)--------->ARR11(3)--------->MYB52(1)   acgatactaaataacttaaaacaatttgatgttgtattttatgaaaagaaatttgtcaaccaaacaaaatgaaggatatttggatccgatagtaacgatt  2335200                                                                                   <---------TOE2(3)                                                            ----------->GT1     <---------AHL20(2)   --------->ANAC46                                     ---------->DOF2         --------->AHL20(2) ----WOX13(1)                                <---------AHL20(2)        <---------AHL20(2) ->ATHB12                                   --------->AHL20(2)     <---------AHL20(2) >ICU4          <---------ANAC46            <---------AHL20(2)    <---------AHL20(2)<-----------RAV1(1) -YAB1         <-----------------------TaNAC69(2)      <---------AHL20(2)       <---------YAB1    <-- -GT1 <---------GLK1(2)                 <---------YAB1<---------AHL20(2) <-----------GT1    <--------   gatatacagaatttagtggcataaaaactactccctctgtttctaattaaatgtaatttaaagggttttttattttttcaatataaatgttgttttgatt  2335300  Previous    Next  AGI:  At1g07580.1    Description:  pre-tRNA. tRNA-Ala (anticodon: AGC) Range:  from: 2334819    to: 2334891    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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