Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      --------->ZAT6                                                                                   --------->ZAT14                                                                                   <---------ZAT14  ----------->RAV1(1)                                                              --------->SPL7 ------->ANAC58                                                                    --------->ZAT18 ------->AtLEC2                                                                 <---------ANAC58 ------->ANAC55(1)                                      <---------YAB1          <---------ANAC58 ------->ANAC46            --------->ANAC46   --------->ARR11(3)               <-------TEIL         < ------->ANAC58       ----------->HVH21       <---------ARR11(3)<---------ALFIN1<---------ANAC46 <--- ------ALFIN1   --------->LBD16     <---------GLK1(2) --------->YAB1      --------->HSFB2a(2)    ---- -->AtMYB61    <---------LBD16 ----------->RAV1(1)   <---------YAB1       <---------HSFB2a(2)  <-----   cacgcaacatgttagaccctggaaatgacacaacaccagaatcaccaagatgtttattatcaaacaacacttcattctcgatgcgtacactagaattgct  2311400                                                    <------MYB46(1)           <-----------GT1                          <------MYB83           --------->YAB1                           <---------ANAC55(2)           <---------ICU4                          --------->MYB59        --------->YAB1                             --------->MYB111(1)       <---------YAB1                          --------->ATHB12    <---------YAB1                             -------->ATHB1                                 ------- -------GAMYB                   <---------ZAT6--------->ICU4                          <---------ANAC58 ------At4g35610          --------------->AGL15<---------ICU4                         <---------ANAC58 ----->At4g35610          <---------------AGL15--------->ATHB51                  --------->At4g35610 ----RAP2.6(2)           <-----------------AGL2<--------HAHB4                    <---------At4g35610   gctgttactataatcaccactattactactactactggtagtaatcgaattattaggtatagaagactgagtctgcgagtcgctgatgacttgctgcaac  2311500                                                                                  --------->ANAC55(2)                                                                         --------->ZAT2                                                                         <---------ZAT2                                                                         --------->At4g35610       <---------MYB52(1)                                                <---------At4g35610    <---------TOE1(2)       --------->YAB1                             <------ZmHOX2a(1)   ------>ZmHOX2a(1)  --------->ANAC58                           --------->HSFB2a(2)         -------- ---->RAV1(1)         --------->ANAC58                           <---------HSFB2a(2)       ----------   atttcctcggtttgtcgaagagccaaggaatcatagaagatagactgcttctcagcgagactctcttccataaggagctggtttacatatttcaaaaggg  2311600                                                                     <------MYB46(1)                                                                     <------MYB83                                                                    <---------AtMYB61                                                                    <---------DEAR3(1)                                                                    --------->MYB111(2)                                                                    --------->MYB46(2)                                                                    --------->MYB55(2)                                                                   <--------P                                                                 --------->HSFB2a(1)                                                                 <---------HSFC1(2)                                --------->DAG2                   <---------MYB46(3)                      <---------MYB46(3)                         --------->HSFC1(2)                    --------->ZAT2                    --------->ANAC58                    ----------->RAV1(2)               --------->ANAC58                    <---------ZAT2               --------->HSFB2a(2)--------->MYB111(1)                    --------->At4g35610          <---------HSFB2a(2)<---------MYB46(3)                    <---------At4g35610         ------>ZmHOX2a(2)<---------HSFB2a(1)           <-----                  <-----------RAV1(2)   --------->ARR11(3)      <---------TOE2(3)             -------                 <---------At4g35610    <---------ARR11(3)      <---------TOE1(2)             <------ ->DAG2   --------->WOX13(1)   ---------->DOF2<---------AGP1    <---------TOE1(3)         --------->LBD16 >DOF2 --------->GLK1(2) <---------ANAC46 ------>ZmHOX2a(2)     <---------TOE2(2)   ------>ZmHOX2a(2)   tgttttcagaatcaatctcatcagctggtggagaaaagtgatgatcttgatctggaacccaaatcgaaggttggtgatagtattgatccatccgaagatc  2311700                                    --------->ARR14(2)                                  --------->LBD16                                 <---------ANAC55(2)                                 --------->HSFB2a(2)                                 <---------HSFB2a(2)                                 --------->ANAC55(2)                                <---------LBD16                                ------>ZmHOX2a(2)                              --------->TGA1a                               <------ZmHOX2a(2)                               ----------->RAV1(2)                               --------->CCA1(2)                               --------->ZAT2                               --------->ARR14(1)                              <---------ZAT2                              <---------ARR14(2)                               <---------TGA1a                              --------->ARR14(2)                               ======================                              --------->ARR14(3)                               ======================                              <---------ARR11(3)                             <---------ALFIN1                              --------->ARR11(1)                           --------->AtMYB61                              --------->AGP1                               <---------ALFIN1                              <---------ARR14(3)  ----------->ARR10     <---------WRKY18(1)                              --------->ARR11(3)  --------->ANAC58     --------->WRKY45                       --------->ARR14(2)         --------->ANAC58     --------->WRKY12                       --------->GLK1(2)      <------MYB46(1)          --------->WRKY38(1)     ================================================================================================     --------------->AGL15  ----------->ARR10 <------MYB83            --------->DOF5.7(2) -ZmHOX2a(2)           <---------ARR14(2)     ----------->GT1         <---------MYB52(1) -->ARR11(3)          <---------ARR14(1)     --------->MYB59         --------->At4g35610 ---ARR11(3)       --------->ANAC46 <---------ARR14(2)              <---------MYB46(3)            <--   aaaatcactagaagaaggaacaccgaatccaagatccggaatcgaagttggtaagaaactcacatcgtagccgttgaccacacctgagtaattcgattcc  2311800                      <---------AHL20(2)            <---------GLK1(2)        ---------->DOF2<---------AHL20(2)   --------------->AGL15   <---------------AGL15                                                ---------->DOF2  ----------------->AGL2                                       --------->HSFB2a(2)  ----------------->AGL3                          --------->LBD16    --------->AtLEC2 ==================bZIP_DOF                      --------->LBD16--------->ETT(2)                   -- ==================bZIP_DOF<---------AHL20(2)   <---------LBD16<---------HSFB2a(2)                 <- ==================MADS_MADS           --------->TOE1(3)   <---------ANAC58                     <---- -------ATHB12    <----------DOF2      --------->TOE2(3)   <---------ANAC58           <-----------GT1   atcatccaaaaaaagaaactcttttttatttttttgtaaaaccctaaattccctgaatttggcttctcgacatacaaagaacagagttttacaaaagatt  2311900                                                ----------->HVH21                               <----      <---------GLK1(1)                       <---------At4g35610                         <------NtERF2    ------->GAMYB                             --------->At4g35610     <---------ANAC46 <------ZmHOX2a(1)   --------->ANAC58                         --------->REM1(1)    --------->ATHB12      ==============   --------->ANAC58                     <---------ANAC58        <---------YAB1      ================= ------->At4g35610     <------ZmHOX2a(1)<---------ANAC58        --------->ICU4      <------ZmHOX2a(1) --------At4g35610  <------ZmHOX2a(1)   <---------ANAC46   --------->ALFIN1   --------->DAG2   ------ ---TEIL         --------->At4g35610<------------CBF   <------ZmHOX2a(1)     ---------->DOF2  -------   cagcaacgaaatctgaatcagaggaggactctagacaacattgcttacatctgaagaggaagtgggatgattaagtggaaaaagtaggaggaggcataaa  2312000                   --------->AHL20(2)              ------------>CBF                                                               <-------      <----------DOF2                                                                <---------WOX13(1)      <---------DAG2      ---------->DOF2                                           <------------CBF   --------->ARR11(3)  --------->AHL20(2)           <---------ANAC46               --------->ATHB51   <---------ARR11(3)--------->TOE2(3)             <------NtERF2                  <---------YAB1 -----TOE2(3) ===================================HOX2a_HOX2a                  <---------ANAC46 ====================HOX2a_HOX2a          <------ZmHOX2a(1)                   <---------ANAC58 ====================HOX2a_HOX2a        <---------TOE2(3)     --------->ICU4  ----------->GT1<------- --->DAG2     <------ZmHOX2a(2)      <---------AHL20(2)  ----------->GT1      <---------ANAC58<------ --->DOF2   --------->WOX13(1)----------->GT1 <-----------RAV1(1)         <------------CBF---------->CDC5   ggtgagaactttatcgatcaattcattaaaaagagataatttaaggacatgttggcgaagagtaatattcaaatgggattgggtataattgctaagcgtg  2312100                                                      <---------LBD16                                                      --------->LBD16                                                     <---------LBD16                                                --------->HSFB2a(1)                               ---                                                <---------HSFB2a(1)                               <--     --------->ANAC58                           --------->HSFC1(2)                               <---     --------->ANAC58  <---------ZAT14          <---------HSFC1(2)     <----------ID1            <--- --ANAC58--------->ANAC58                    <------ZmHOX2a(1)     --------->DAG2             <------ --ANAC58--------->ANAC58                 <------ZmHOX2a(1)      ---------->DOF2            <-------TEIL -----HVH21            --------->ZAT14<------ZmHOX2a(1)--------->LBD16 <----------ARF1 <-------------   agagaagaagcaagaaattgagaactgtagagagattagaggaaggaggaagtttcccgggaaactcgaaagggggacaagaccagtcttgcgattcgtc  2312200  ----------->GT1                                               --------->PCF2 <------ZmHOX2a(1)                                              <---------PCF2       <---------WOX13(1) ------>HSFB2a(2)                      --------->ICU4      --------->ATHB12        --------->ATHB12 -------HSFB2a(2)                   <---------YAB1       <----------DOF2          <---------ZAT6 ------TOE1(1)                  <---------ANAC58        <---------ANAC58          <---------YAB1  <-- ------TOE2(1)                  <---------ANAC58        <---------ANAC58 <---------YAB1           --- -----HVH21                   <-----------GT1   <---------YAB1  --------->TCP20   --------->ICU4 ---- --------WRI1             <----------DOF2      <---------ARR14(2)        <---------AHL20(2)      ----   cgaggagtcaaaactcaaaactatctctcttttgacttgtcattaagagtattcttgggcttgatgggcccagtttttattgtagtgattgtcatgttat  2312300  Previous    Next  AGI:  At1g07520.1    Description:  scarecrow transcription factor family protein. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein 1 [Castanea sativa] (GB:ABG77971.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 2309561    to: 2311802    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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