Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   --                                                                                               <-----                                                                                               ------                                                                                  <----------DOF2 ---                                                                           <------MYB46(1)    -------                                                                           <------MYB83       <------                   <---------ZAT14                                        --------->MYB59    --------      --------->DAG2            ----------->GT1                           <---------AtMYB61  ------>MYB46(1)     ---------->DOF2        <---------TOE2(3)                          --------->ATHB12      ------>MYB83  --------->YAB1   --------->ZAT18  <-------TEIL                 --------->AHL20(2)     <-----------GT1 <---------YAB1--------------->AtSPL8<---------ANAC55(2)      --------->WOX13(1)  <---------DAG2  <--   cttatgataaagttggatgagtactctatttatgtagttacatatatcgcctctaaacctttggcaattacattgtttggtctgcttttttttccaacca  2291100                                           <---------WOX13(1) ------->ANAC46                           <---------ANAC58 --------->GT1                            <---------ANAC58 ----ALFIN1                             <---------YAB1 ->GAMYB                          <---------AHL20(2)                                     --------->YAB1 ---->MYC3                       <---------AHL20(2)                                 <---------ANAC58 -->MYB46(3)                     <---------AHL20(1)    --------->DAG2               <---------ANAC58 ---MYB55(2)<-------GAMYB ----------->GT1--------->ATHB12  ----------->GT1          <---------ANAC46 >P        <---------MYB46(3)    --------->AHL20(2)   ---------->DOF2               <---------AtLEC2 -----MYC3 --------->MYB52(2)<---------AHL20(2) ---------->DOF2                 <----------DOF2   cgcgtaaattggtttgttgttgttacacaagttaattaatttttgattgccaaagaaaaagttgtaatttcattctcaaactctttgcttgtcataagtt  2291200                                                                                                   <-                                                                                       <---------AHL20(2)                                      <---------WRKY38(1)                              --------->AHL20(2)                                      <---------WRKY12                   <---------AHL20(2)<---------AHL20(2)                              <---------At4g35610                        --------->AHL20(2)--------->AHL20(2)                              --------->At4g35610                        --------->AHL20(1)--------->AHL20(1)                            <-----------RAV1(2)             --------->TOE2(3)          <---------AHL20(1)                           <------ZmHOX2a(2)               <---------ANAC55(2)        --------->AHL20(2)                <-----------GT1       <---------WRKY45     ----------->GT1          --------->TOE2(3) <---------At4g35610      <-----------HVH21    <-----------HVH21  <-----------GT1 --------->ICU4   --   tttagatgatttagtttttaacagaatggatcaggtgaagtcaacgaggtgtcatataaaaacgtaaataacaaattttttgtattcattaaatttttta  2291300                                                                                         ------------                                                                                      ------->PIF4                                                                                      <-------PIF4                                                                                      ------->MYC4                                                                                      ------->MYC2                                                                                      <-------MYC2                                                                                      <-------PIF5                                                                                      ------->MYC3                                                                                      <-------MYC4                                                                                      ------->PIF5                                                               --------->TOE2(3)      <-------MYC3                                                             --------->ARR11(3)      --------->O2                                                             <---------ARR11(3)      <---------TGA1a                                                          --------->AHL20(2)         --------->ANAC55(2)                                                          <---------AHL20(2)         <---------O2 ---                                                    ----------->GT1 <---------ATHB12 <---------ANAC55(2)                                                 ---------->DOF2------------>CBF    ------------>OsbHLH66          <----------DOF2                        ==============================================bZIP_DOF      <-----------GT1                     ------------------------>ANAC81  <---------At4g35610    <-- --------ARR11(3)           <----------DOF2    XXXXXXXXXXXXXXXXXXXX>MIR1886.1<---------YAB1  <------- ------->ARR11(3)        ------->TEIL    ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(i)--------->TGA1a   aaatctattttccttttgtattttttgcatcttttttgtctgaaaaagagagaaaggaaataaaatctcaatcgtggagatgatagcacgtgtcaatgtt  2291400       ------>ZmHOX2a(2)      <------ZmHOX2a(2)     <---------ARR14(2)                           <---------WRKY18(1)             ------>ZmHOX2a(1)     <---------ARR11(3)                          --------->WRKY38(1)          ------>ZmHOX2a(2)   --------->ANAC58                              ----------->HVH21           --------->GLK1(1)   --------->ANAC58                   <----------DOF2   <----------DOF2      <---------GLK1(1) >CBF--------->ARR14(2)<---------AHL20(2)      <---------ANAC58             --------->ARR11(3) -------->HVH21        --------->AHL20(2)      <---------ANAC58        ==================HOX2a_HOX2a -------ETT(1)       <-----------TBP  <---------DAG2  *TSS             ------>ZmHOX2a(2)        ----- ----RAV1(1)------>ZmHOX2a(2)    <---------At4g35610-------->ZAP1     <---------GLK1(1)         <----   gcgacacgatctgatccaaacctatttatattcttcgctgctttttctgtcttgaccgctcttcttctatcgatctctgatctcctcttctctctgtctt  2291500                              ------>NtERF2                             --------->ANAC46                             --------->LBD16                             ------>NtERF2                            --------->LBD16                         <------ZmHOX2a(2)                        <---------ARR14(2)                      --------->DEAR3(1)        --------->LBD16                     <------NtERF2             --------->ATERF1(2)                    ------>NtERF2              <---------ATERF1(2)                   --------->DEAR3(1)          --------->ANAC46           --------->ANAC46<---------LBD16    --------->RAP2.6(3)                   ----------->GT1        <---------ETT(2)--------->ARR14(2)    <---------LBD16                       <------MYB83     --------------------->WRI1              --------->MYB52(1)                     <------MYB46(1) ---->At4g35610    <---------DEAR3(1)      <---------SPL7  --------->STY1(1)       <---------AtMYB61 -----At4g35610  <-----------HVH21<---------ALFIN1         <---------STY1(1)      <---------WOX13(1)   ctgagttctgtctacgcttcgtcgccgatcccggccagactccgtcttaccggcacaaaccctaggtgagcctcaagagtttggattggtttattgtttt  2291600                                                                    --------->ANAC58                                                                    --------->ANAC58                                                              --------->LBD16                                                             --------->LBD16                                                             <---------HSFB2a(2)             --------->AHL20(2)                             <---------HSFB2a(2)             <---------AHL20(2)                             <---------LBD16            <---------AHL20(2)                              --------->HSFB2a(2)            --------->AHL20(1)                           <---------GLK1(1)            <---------AHL20(1)                           --------->GLK1(1)                  ---------            --------->AHL20(2)                          <---------ARR14(2)                 ----------   <---------LBD16                                      --------->ARR14(2)              <------NtERF2  <---------HSFB2a(2)                                   <---------GLK1(2)    <---------MYB52(1)    <-  --------->HSFB2a(2)        --------->TOE2(3)         --------->At4g35610<-------TEIL --------->LBD16  <---------ANAC46     <---------ARR14(2)    <---------At4g35610  <------ZmHOX2a(1)   --------->ANAC46 <---------LBD16       --------->ARR14(2)    --------->At4g35610--------->SPL7       <---------LBD16   tgttctgggggaaatttatttggcaaattcacctaaaatgttgtttctgatgaaatcagattcccggaggacgaaattcgttttttcgccggaactaaat  2291700                                                                                  <---------ANAC58     --------->CCA1(2)                                                            <---------ANAC58    <---------ARR14(2)                                                      ---------->DOF2  ----------->ARR10                ---------->DOF2                   <---------ANAC46 <------ZmHOX2a(1)            ------->GAMYB     <---------CCA1(2)    --------->bZIP60(1)            - ------>AGL15          --------->REM1(1)    <---------ANAC46         <---------ETT(2)       <-------TEIL ------->AGL3         --------->SPL7      <---------ANAC46           <---------bZIP60(1)<------ZmHOX2a(1) --------TOE2(3)      <-------TEIL --------->MYB46(3)           <------ZmHOX2a(1)<-------TEIL      --   taaggagatttgagaggctatgggtacaacaacgacaacaagcgctgtgtatatccatgttatcgaggatgtcgtcaacaaagttcgtgaggagttcatt  2291800                                                                                              <------              <---------ANAC58                                      --------->ICU4            -------              <---------ANAC46    <----------DOF2                   <---------YAB1          <--------              <---------ANAC58  <---------ZAT2                    ---------->DOF2  --------->ARR11(3)           ------>ZmHOX2a(1)    --------->At4g35610        --------->At4g35610     <---------ARR11(3)   ------->GAMYB              <---------ZAT18              <---------At4g35610    <---------CCA1(2) -------->MYB52(1)   <---------ZAT14                   --------->YAB1--------->ATHB12 <----------DOF2 ------->MYB46(3)    --------->ZAT14                --------->WOX13(1)        --------->AHL20(2)   aacaacggaggtcctggcgagagtgttctcagcgagcttcaaggagtgagttttcaattagagctgaataaagattgaatttttatatctttagtggatt  2291900             <----------DOF2            <---------ANAC46       <-----------RAV1(1)                                                                 --------->ATHB12     <---------ANAC46                                                          <---------YAB1     <---------ANAC58                                                        --------->AHL20(2)     <---------ANAC58      ------>ZmHOX2a(1)                     --------->At4g35610     <----------DOF2   <---------ANAC46       --------->TOE2(3)                   --------->At4g35610      --------->At4g35610 ---ARR14(2)<---------ANAC58                     --------->GLK1(1)           --------->ATHB51 -->ARR14(2)<---------ANAC58                     <---------ARR14(2)         <---------MYB52(1)     -- -ZAT18--------->ALFIN1---------->ID1<---------TOE2(3)        <---------At4g35610      <---------At4g35610   cgatgttgtgtgtggctttggatttgttccttagtaactagggtttttgggaattcgtcatttcatctgcttaaatccattattttgggagcttaattgg  2292000  Previous    Next  AGI:  At1g07470.1    Description:  transcription factor IIA large subunit, putative / TFIIA large subunit, putative. similar to transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) [Arabidopsis thaliana] (TAIR:AT1G07480.2); similar to transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) [Arabidopsis thaliana] (TAIR:AT1G07480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21604.1); contains InterPro domain Transcription factor IIA, helical; (InterPro:IPR009083); contains InterPro domain Transcription factor IIA, beta-barrel; (InterPro:IPR009088); contains InterPro domain Transcription factor IIA, alpha/beta subunit; (InterPro: Range:  from: 2291454    to: 2294585    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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