Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                          --------->ARR11(3)                            <---------ANAC58                                      <---------AHL20(2)                            <---------ANAC58                                    <---------RVE1(1)                      --------->ARR11(3)                                        <---------CCA1(1)                      --------->ARR14(3)                                       <---------ARR11(3)                      <---------GLK1(2)                                        <---------GLK1(2)                      <---------ARR14(3)                               ---------->DOF2    <---------ARR11(3)                      <---------ARR11(3)                --------->ANAC46       --------->ARR11(3)  <- ------CCA1(2)  <-----------GT1                  --------->ICU4   --------------->AGL15   --------->ARR14(2) ---GT1     <---------TOE2(3)  --------->MYB52(2)<---------YAB1   <---------------AGL15   <---------ARR14(2)   tatcgtattggatttatgttacaagattttgcttagttgtattgaactgtgatcattcacaccattttctgaaaaaagaaagatttttttagtatcttga  2277400                                       <------ZmHOX2a(1)                                      <---------YAB1                                   ------>ZmHOX2a(1)                                  --------->TOE2(3)                                <---------YAB1    --------->RVE1(1)         <---------GLK1(1)                               --------->ATHB12   --------->ARR11(3)         --------->GLK1(1)                               <---------ICU4     ----   <---------ARR11(3)       --------->ATHB12                                 <---------YAB1   ------- --->ATHB12                 <---------ICU4                              <----------DOF2    <---------At4g35610 --------AHL20(2)         <---------WOX13(1)               ----------->GT1 --------->YAB1  --------->At4g35610   tttaaaatctcttgaagacataagtgtgaatgatttccttaggattagtttttggtttggccagtttatatgctctttgatcattgtaatagtagcagcc  2277500                    <---------WRKY38(1)                    <---------WRKY12                                 <---------ICU4                    <---------WRKY45                                 --------->ATHB51                   --------->WRKY18(1)                   <-----------GT1         --------->AHL20(2)                <---------ANAC46       --------->YAB1  --------->ZAT18<------MYB83              <---------ANAC58 <----------DOF2  --------->ARR11(3) ------>DOF2     <------MYB46(1)           <---------ANAC58 <---------DAG2   <---------ARR14(2) -->At4g35610<-----------RAV1(1)   <----------DOF2   ------>ZmHOX2a(1)      <---------CCA1(2)   aaagtggtctataaattgttggtcaacctcttcttggctttaatgggttgtaatccttttaacttttttcataatttcaaatcttgtttctggtttcaaa  2277600                                                          --------->ALFIN1                                                         ------->PIF4                                                         <-------MYC3                                                         <-------PIF4                                                         <-------MYC2                                                         ------->MYC3                                                         ------->PIF5                                                         ------->MYC2                                                         <-------PIF5                                                         ------->MYC4                                                         <-------MYC4                                                        <---------TGA1a                                                        --------->TGA1a                                                        <---------O2                                   <------MYB46(1)      --------->O2                                   <---------ANAC46    ------->TEIL                                   <------MYB83   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              --                                  --------->ALFIN1<---------bZIP60(2)                             ---                                  <---------DEAR3(1)   ------------>OsbHLH66                     ----                                  --------->MYB111(2) <------------OsbHLH66                <---------ALFIN1               <---------------AGL15 --------->ALFIN1<---------ZAT18                    --------->ANAC46           --------->AHL20(1)     <---------AtMYB61  --------->ZAT18                  <-----------GT1 ---------->DOF2        <-----------HVH21         <---------ANAC46               <-------TEIL--------   aatcaaagcgaaatatactaaaatagggtcactagggaggtggaagagggtgatgtgcacgtggggatgtgttagcaatagcattcatttactccaccga  2277700                                                                                         <---------RVE1(1)                                                                                         --------->GLK1(1)                                                                                         <---------GLK1(1)                                                                                <---------At4g35610                                                                                --------->At4g35610                                                      <------MYB83              --------->ZAT2                                              ---------->DOF2             --------->ARR11(3)      <--                                           --------->AHL20(2)             <---------ARR11(3)     <---     ----------->HVH21                   --------->YAB1              --------->AHL20(2) --------->ARR11(3) <xxxxxxxxxxxxxxxxsmallRNA(i)          --------->AHL20(2)         --------->AHL20(2)    <---------ARR14(2) ------->DAG2                         --------->YAB1  <------MYB46(1)<---------AHL20(2) <---------ARR11(3) ------->DOF2                        --------->AHL20(2)   ----------->GT1--------->CCA1(1)<---------ARR11(3) ------>DOF2                     --------->AHL20(2)  <---------MYB46(3)  --------->RVE1(1)--------->ARR11(3) ->ANAC46  <---------YAB1        <---------AHL20(2) <--------P   --------->AHL20(2)     --------->ARR14(2)   aaaggccctgactctgatagagagagtggtcttaaaaaaataaaaataaaaagagttggtgagaaaaataaaaaaatatctcagttgccagatatctatt  2277800                               --------->O2                               --------->TGA1a                               <---------TGA1a                      --------->MYB52(2)                    <---------ANAC46                  <------------------------ANAC81            <---                 <---------MYB52(1)     ------>ZmHOX2a(1)  <<<<<<<<<TBF1                        <----       ----------->HVH21       ===============================bZIP_DOF                         ------    *TSS        <-------GAMYB  <---------O2  <---------ALFIN1 <<<<<<<<<TBF1                    <----- -------YAB1    =========================MYC_MYB   <----------DOF2               ----------->RAV1(2) --------GT1   <-----------RAV1(1)     <---------ALFIN1 <<<<<<<<<TBF1--------->REM1(1)         ------   ttcattttggtgacagtctgttgtttgtttcactcgtggctcctctcccacctctttcttcttcttcttctacatctcttcccatctgtctctcatagat  2277900                                 --------->ARR14(2)                                 <---------ARR14(2)                                <------MYB83                                <------MYB46(1)                               --------->MYB111(1)       <---------ANAC58     <------MYB46(1)       <---------ANAC58     <------MYB83                                     <---------GLK1(2) ----TEIL                 <--------P                                         <---------ICU4 --ZmHOX2a(2)       --------->ARR14(2)                                    --------->YAB1 --->AGP1           --------->GLK1(2)                                     <---------ICU4 ----ARR11(3)       <---------ARR14(2)                                   <---------YAB1 --->ARR11(3) <---------ANAC46 --------------->AtSPL8            <----------DOF2                -----   ccatccatggcttccttcgtggaatctggttggcaggtactctctctctctctctctctctctctctctttcttcatcataatctcatctatctaatcct  2278000                   ------>NtERF2                            <---------YAB1                   --------->LBD16                        ----------->GT1                  <---------LBD16  --------->HSFB2a(2)--------->ZAT14          <---------TOE1(2)  ------>ZmHOX2a(1)   --------->ZAT18     <---------ANAC58    <---------GLK1(2)   <---------GLK1(1)        --------->ZAT14    <-------TEIL             --------    --------->ARR14(2)  --------->GLK1(1)        <---------ZAT14<-------TEIL  --------------->AGL15 ->ZmHOX2a(1)    <---------LBD16   <---------HSFB2a(2)<---------ZAT14<---------ANAC58      --------->MYB46(3)   gcttccgattccctcgttttccggcgatttcctccgtctcgatgacttaagttcactgtattgtgatacatgcgttttttttttttttagtaatccaccg  2278100                             <-----------HVH21                          <---------ANAC58          ------>ZmHOX2a(2)                          <---------ANAC55(1)      <------ZmHOX2a(2)                          --------->ANAC55(2)      --------->CCA1(2)            <---------ARR14(2)                    --------->ARR11(3)     ------>ZmHOX2a(2)    <---------ANAC55(2)     <---------AGP1     <-------TEIL         <---------ANAC58        --------->AGP1                         <-----------GT1    <------ZmHOX2a(2)     <---------ANAC46        <---------ARR11(3)                     <---------WRKY18(1)   --------->ARR14(2)<------MYB46(1)--------------->AtSPL3  >>>>>>>>>>WRKY63 <---------ANAC58   -----   <---------ARR14(2)<------MYB83  --------->ZAT14--------->ARR14(2)         <---------ANAC46  <----- ->MYB52(1) --------->ARR14(2)     <---------ZAT14<---------ARR14(2)         <---------ANAC58  ------   gtctggatccatcggattcaatttggtttcgtgtcattgcagtactgttttagatctgaatttgactatgctactagttacgttggaattttgaccgtat  2278200                                      <---------ARR14(2)                                      --------->ARR11(3)                                      <---------ARR11(3)    --------->ANAC58                      <---------At4g35610     <---------LBD16                 <---------ANAC58<---------REM1(1)          --------->ANAC58         <---------MYB52(1)    <---------ANAC58             <---------ANAC55(2)       <---------ANAC58        <---------ANAC46             --------->ANAC55(1)              --------       <---------ANAC58 <----------DOF2      --------->CCA1(2)                               --------    --------->ARR14(2)--------->At4g35610   --------->ARR11(1)       --------->YAB1  <---------DAG2 ---->GLK1(1)    <---------ANAC58--------->ALFIN1           --------->ANAC46         <----------DOF2 ----ARR14(2)   --------->At4g35610 ----------->ARR10  ----------->ARR10 <---------AHL20(2)  <------- --->ARR14(2)<---------MYB52(1)<---------ANAC58    ------>NtERF2   ------->TEIL     <---------DAG2   ttccagtttccgtctgtttgctggagcttaaatgggtgtagatattgatacggggcctagacacgcatgaatcatataatcgagccccttttttgtgctc  2278300  Previous    Next  AGI:  At1g07420.1    Description:  SMO2-2 (sterol 4-alpha-methyl-oxidase 2); C-4 methylsterol oxidase. similar to SMO2-1 (sterol 4-alpha-methyl-oxidase 1), C-4 methylsterol oxidase [Arabidopsis thaliana] (TAIR:AT2G29390.2); similar to putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] (GB:AAO13795.1); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) Range:  from: 2277804    to: 2280294    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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