Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    ----------->GT1  --------->LBD16 --------->HSFB2a(2) <---------HSFB2a(2) ----->ZmHOX2a(2) ---------LBD16 ------->CCA1(2) -----ZmHOX2a(2)                                                                             ======== ------->ARR14(1)                                                                            -------- -------ARR14(2)                                                                             -------- ------>ARR14(2)                                                                             -------- ------>AGP1--------->CCA1(2)                                                                -------- ------>ARR11(3) <------ZmHOX2a(1)                                                           <------- ----->GLK1(1)  <---------At4g35610                                                 <---------YAB1 ------GLK1(1)<-----------RAV1(2)   --------->ANAC46                              <-----------GT1 ------>ARR10<-------TEIL           --------->ANAC58                       <---------HSFB2a(2) ------ >CCA1(2)   --------->GLK1(2)       --------->ANAC58      --------->ATHB12----------->GT1   <--------   gatccggaaataagattcaggagccattgaaacaaaacaagcaatagcaaaatccaagaatgtttgagagaaggaatcgagaaatcaccattcgcacgta  2262700                             <---------WOX13(1)                           --------->ATHB12                          <---------YAB1                        --------->At4g35610   <-----------HVH21    <---------At4g35610 <--------P           <-----------RAV1(2) =========MYC_MYB  <-------TEIL ->ANAC58         --------->ARR14(1)                                        <---------ZAT14 ->ANAC46         --------->CCA1(2)        <---------ANAC58                 <---------ARR14(2) ->ANAC58        <---------GLK1(2)         <---------ANAC58         ------>ZmHOX2a(2) ->TGA1a         --------->ARR14(2)        --------->HSFB2a(1)    <---------ARR11(3) --TGA1a         <---------ARR14(2)        <---------HSFB2a(1)    --------->ARR11(3) --->ALFIN1      --------->ARR11(1)--------->GLK1(1)        <----------DOF2 --------->ARR14(2) -TOE1(2)      ----------->ARR10   <---------GLK1(1)--------->MYB46(3)      --------->ZAT14         -   ggggttgtcaccgagacaagattcgcagatgattgggaaatcggagcgttcccatccatcggcttcatgatctctcagtattctgtgagccattctctta  2262800                                                                                    <---------TOE1(2)                                                                                   <---------ANAC58                                                                                   --------->ANAC55(2)                                                                              <---------GLK1(2)                                       <------ZmHOX2a(1)                      --------->ARR14(2)                                  --------->ANAC46              ---------->DOF2    <---------ANAC46                                  --------->ANAC58     <-----------GT1        <---------ARR14(2)  ---                                  --------->ANAC58--------->ARR11(3)  <------MYB46(1)          <-----                           <---------HSFB2a(2)    <---------ARR11(3)  <------MYB83 <---------ANAC58 ----->ZmHOX2a(1)      <---------CCA1(2)  --------->ATERF1(1)  *TSS   <---------DEAR3(2)     --------   tcctctgattcgattagtcgatatcaaatctcgaacacgaaggagacgacgagattttaactagggcaaagtcggttttggattcgcgtgtttttgtctt  2262900                                                          --------->AHL20(2)                               ------------>CBF           <---------YAB1                  <---------ICU4  <---------ICU4           --------->ZAT6              <----------DOF2                 --------->YAB1 ------>AHL20(2)        <----------DOF2        <---------DAG2<---------YAB1         <----------DOF2 -----DOF2       --------->TOE2(3)             <----------DOF2           <-----------GT1  --------->YAB1 -->ID1          --------->TOE1(3)           ------->TEIL <---------AHL20(2)------->GAMYB<---------YAB1   ttaaatattacaaataaaaccctaaactttcactacaattcgaaatgaacttttcttctttttattaatacaaattaaccctctaacttttataatgacc  2263000                                                 <---------ANAC58                                                 >>>>>>>>>>E2Fa                                                 <---------ANAC46                                  <------NtERF2  <---------ANAC58                                 <---------RAP2.6(3)                                 ------>NtERF2  <---------LBD16                                 <---------ATERF1(1)                              ------>NtERF2                                --------->ATERF1(2)                               --------->LBD16                                --------->RAP2.6(2)                              --------->ANAC58                                <---------DEAR3(1)                               --------->ANAC46                               --------->ATERF1(1)        ------>MYB46(1)        --------->ANAC58               --------->TOE2(3)<---------ATERF1(2)<------NtERF2                <---------LBD16   <-----------GT1             --------->RAP2.6(3)--------->LBD16           --------->GLK1(1)  ------  --------->CCA1(1)           ------>NtERF2 <------------CBF                <---------GLK1(1) -------  --------->RVE1(1)    --------->ATHB12   --------->ZAT18 ------>MYB83 ----------->GT1  ---------->DOF2   aaaaatatccatccaattcttaaaacgattgaggccggcactagcgcattggcgggaaccaaatagcttagaatggcgaaatcccgccagaaaagaaaaa  2263100                                      <----------DOF2                                 <<<<<<<<<GATA-2                                   --------->ARR11(3)                                 <<<<<<<<<GATA-1                                   <---------ARR11(3)                               --------->WOX13(1)          <---------GLK1(2)      --------->CCA1(1)                             ------------>CBF       --------->LBD16         <---------YAB1                           <---------ZAT6          --------->RAP2.6(2)--------->ZAT18  ----------->TBP<---------WRKY18(1)  *TSS    ---------->DOF2  <---------YAB1--------->YAB1 --->DAG2       ----------->HVH21<<<<<<<<<GATA-3   --------->ANAC46   --------->ZAT14              <- --->DOF2       --------->WRKY12 <<<<<<<<<GATA-4  <---------LBD16     <---------ZAT18      <---------   gcttataaatcggactccttgaccttatagtgtcaatccactttccaaaatagccgcaaacgattctcattgtgaactctgataatatctaagacgacga  2263200                                                             ------>ZmHOX2a(2)                                                            <------ZmHOX2a(2)                                                            --------->CCA1(2)                                                            --------->ARR14(1)                                                           <---------ARR14(2)                                                           --------->ARR14(2)                                                           --------->ARR11(3)                                                           --------->ARR14(3)                                                      --------->YAB1                                                     <---------ATHB12                                            --------->HSFC1(1)                                            <---------HSFC1(1)                                            >>>>>>>ZML2---------->DOF2                                            --------->HSFB2a(2)    <---------DOF5.7(2)                                       <---------HSFB2a(1) <---------ARR14(3)          --------->ANAC55(2)          <---------HSFC1(2)  <---------ARR11(3)         <-------TEIL                  --------->HSFC1(2)  --------->AGP1                    <-------      <---------At4g35610              --------->HSFB2a(1) <---------AGP1             --------->At4g35610 ----------RAV1(1)           <---------MYB46(3)    --------->WOX13(1)        <---------ARR14(2) -ID1 --------->At4g35610  <-------GAMYB    <---------HSFB2a(2)   <---------WRKY38(1) <---------At4g35610   aatgttggagctacgtcttgttcagggctcgttgttgaagaaggttctagaatcaatcaaagatctggtgaacgatgcgaatttcgactgctccagcact  2263300                                                          ------>ZmHOX2a(2)                                                         --------->CCA1(2)                                                         <------ZmHOX2a(2)                <---------GLK1(2)                   <---------ARR14(2)                    --------->ARR14(1)         ----------->RAV1(1)                   --------->ARR14(2)                   --------->AGP1             ----------->HVH21           --------->ANAC46  <---------TGA1a            --------->ARR11(3)     <---------At4g35610           --------->ANAC58  <---------O2               <---------ARR11(3)     --------->At4g35610      --------->ANAC58       <---------bZIP60(2)        <---------ARR14(2)  --------->ZAT14      --------->ANAC58       --------->O2               --------->ARR14(2)  <---------ZAT14--------->GLK1(2) --ALFIN1  --------->ANAC58  --------->TGA1a          ----------->ARR10 --------->ZAT6   <------ZmHOX2a(1)   gggttctcactccaagctatggattcgagtcacgttgctctggtgtctctcttgctaagatccgaaggcttcgaacactacagatgcgacaggaatctct  2263400                                                                                         ------>NtERF2                                                                                        <---------ALFIN1                                                                                       <------NtERF2                                                                                       --------->ATERF1(1)                                                                                      ------>NtERF2                                                                                      <---------ATERF1(1)                                                                                     ----------->HVH21                                                                                     --------->DEAR3(1)                                                                                    <------NtERF2                                                                                    --------->RAP2.3(1)                                                                                    --------->RRTF1(1)                                                                                    --------->ATERF1(1)                                                                                   <---------RAP2.6(1)                                                                                   <---------DEAR4(2)                                                                                   ------>NtERF2                                                                                   <---------ATERF1(1)                                                                                   <---------RRTF1(1)                                                                                   <---------ERF1                                                                                   <---------RAP2.3(1)                                                                                   <---------ORA47(2)                                                                                  <---------ANAC46                                                                                  <---------RRTF1(3)                                                                                  <---------RAP2.3(3)                                                                                  <---------DEAR3(1)                                                                                  <---------RAP2.3(2)                                                                                  --------->DEAR3(1)                                                                                 <---------ABI4(1)                                                                                 <------NtERF2                                                                                 --------->ATERF1(1)                                                                                <---------ERF1                                                                                <---------ATERF1(1)                                                       <---------bZIP60(1)      <---------RRTF1(1)                                                       --------->bZIP60(1)      ------>NtERF2                                                  --------->YAB1                <---------RAP2.3(1)                                                  <---------ICU4               <---------RAP2.3(3)                                                 --------->ICU4                <---------DEAR3(1)                                              --------->ARR14(2)               <---------RRTF1(3)                                              <---------ARR14(2)               <---------RAP2.6(2)                                             <------NtERF2                     <---------DREB2C(2)                                            --------->LBD16                    <---------RAP2.3(2)                                           <---------ANAC46                    <---------RRTF1(2)                 ----------->RAV1(1)       --------->RAP2.3(2)                --------->RAP2.6(3)               <------NtERF2              <---------LBD16 <---------ICU4    ----------->HVH21    ----              --------->ANAC46            <------NtERF2--------->TGA2(1)    ----------->TGA1     ----             <---------LBD16             <---------RAP2.3(1)              <---------At4g35610<-------         ------->TEIL               ---------->DOF2    <---------TGA2(1)  --------->At4g35610--------   ccatggggatgaatctcggcaacatgtcgaagatgctcaaatgcgccggaaatgatgacatcatcaccatcaaggctgatgacggcggcgacaccgttac  2263500                                                                                              <------                                                                                              -------                                                                                             --------                                                                                --------->ANAC46  <---------YAB1                                                                --------->ANAC58 ----->TOE1(3)                                                                  --------->ANAC58<---- ----->TOE2(3)                                --------->ZAT6               <---------------AtSPL3 --- --MYB52(1)                           <---------WOX13(1)                <---------TOE2(3)    <------- ->DOF5.7(2) ----------->RAV1(1)  <---------WOX13(1)                    <---------TOE1(3) -----------   cttcatgtttgagagccccagtaagtttatttgctaattgactgacttactctaatttctggtttctatgggttaagcttgtacgaaatggtggaatgat  2263600  Previous    Next  AGI:  At1g07360.1    Description:  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G29580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21518.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 2260387    to: 2262863    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07370.1    Description:  PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor. Identical to Proliferating cellular nuclear antigen 1 (PCNA) [Arabidopsis Thaliana] (GB:Q9M7Q7;GB:A7UIK5;GB:Q9LNV6); similar to PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2), DNA binding / DNA polymerase processivity factor [Arabidopsis thaliana] (TAIR:AT2G29570.1); similar to Proliferating cell nuclear antigen (PCNA) (GB:Q43124); contains InterPro domain Proliferating cell nuclear antigen, PCNA; (InterPro:IPR000730) Range:  from: 2263138    to: 2264549    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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