Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               ------>ZmHOX2a(2)                            <------ZmHOX2a(2)                            ==================HOX2a_HOX2a                           --------->ARR14(2)                                                --------                     --------->ETT(2)                                                        <-------                  <---------ANAC46                                                          <--------                  <---------ANAC58                                                          <--------                  <---------ANAC58                                                          <--------                 <-------TEIL=================HOX2a_HOX2a                             --------->At4g35610               <---------ARR14(2)                                                   --------->YAB1               --------->ARR14(2)      <------ZmHOX2a(1)      --------->MYB52(1)    --------->ATHB12          ==========================HOX2a_HOX2a              <---------ALFIN1      <---------HSFC1(2)          <------ZmHOX2a(1)<---------ARR14(2)                --------->ANAC46      <---------HSFB2a(1) ------>TOE2(3)<---------GLK1(2)<-----------HVH21          <---------ALFIN1     <------ZmHOX2a(1) >GT1     =========================HOX2a_HOX2a      <---------MYB52(1)       <------ZmHOX2a(1)  -----   cctcgatgttgaggaccgattcgtggacagatcgggtgagaggaagagtaatccgctcgttccacaccggtttgatggaggaggaatcatcggagcgggt  2248700                                                            <---------At4g35610                                                            <---------ZAT2                                                            --------->At4g35610                                                            --------->ZAT2                                                          <-----------RAV1(2)                                                       --------->ANAC58                                                       --------->ANAC58                                                       <---------bZIP60(1)                                                       --------->ANAC46                                                    <---------MYB52(1)                      --------->CCA1(2)            <-----------HVH21                        <--------       --------->ALFIN1                         <---------At5g28300           <---------ANAC58       <---------AtMYB61         <---------SPL7<---------WRKY38(1)            <---------ANAC58 ->MYB55(2)          <---------ARR14(2)       ----------->HVH21               <---------AtLEC2------- --MYB46(3)          --------->ARR14(2)      <-----------HVH21               <-------TEIL----------->HVH21 -ANAC46             <---------ARR11(3)     <---------At4g35610              <---------MYB46(3)------ -ANAC58<------MYB46(1)<-------TEIL         --------->At4g35610         <-----------RAV1(2)<--------- -ANAC58<------MYB83 --------->ARR11(3)     --------->ANAC46<-------GAMYB <---------At4g35610-------- ---->ALFIN1    --------->WRKY18(1)       <-----------RAV1(2) ----------->HVH21      <------NtERF2  -   ggagagagggtggtcttggtcaagatacagaacaacgtagggtttcaggtcaccgttacgccagttgacattcttcaggtgcttggcagagacgacggtg  2248800                                                                                             <-------                                                                                             <-------                                                                                             ------->TEIL                                                                                             --------                                                                                   --------->TOE1(2)                                                                                  ===================                                                                                  <---------TGA1a                                                                                  <---------ANAC58                                                                     <---------AtMYB61      <--------                                                                  <---------DEAR3(1) --------->ZAT18                  ------>NtERF2                                  <---------LBD16  --------->TGA1a                 --------->DEAR3(1)                          <---------SPL7       <---------ANAC58     <-----------HVH21                 <---------ANAC58     <---------ANAC58      <---------ANAC46 -DEAR3(1)      <------NtERF2  <---------ARR14(2)           <---------ANAC58    --------->MYB52(1) -->At5g28300   --------->ATERF1(1)    <---------ANAC58     <---------ANAC46    <---------DOF5.7(2) ----->HVH21    --------->DEAR3(2)    --------->ABI4(2)    <------NtERF2      <---------MYB52(2) ------------WRI1----------->HVH21    <-------TEIL        ------>NtERF2      --------->At4g35610 --->GT1      <---------PCF2<---------YAB1            <---------DEAR3(1)     <---------At4g35610 ------->P --------->ALFIN1 --------->ICU4         ----------->HVH21 --------->ALFIN1<---------ZAT18   acaaccaggtcgagtggctccgacgaagtcatgaatacggtgcgtttcaagacgagacggtggcttacgcggtggtcttagctaacgtgcgctcgtatct  2248900  --------->ARR11(3)  <---------ARR11(3) --------->RVE1(1) --------->CCA1(1)       --------->YAB1                                          ----------->TBP --ARR11(1)         --------->ZAT2                                          ------>NtERF2 --ARR14(2)         <---------At4g35610                                    --------->ATERF1(2) ->ARR14(2)         --------->At4g35610      <---------YAB1              --------->ZAT2 =====================bZIP_DOF     --------->YAB1                        <---------ZAT2    <--------- -CCA1(2)  ---------->DOF2        <---------YAB1            *TSS         --------->At4g35610      <--   caaatatctgtatcaaagtctcagctatcatcaactatcatcgttttatcacagagttttatgtctcaaaaaacctgctggctatataagaggcttttga  2249000                                        <---------YAB1                              <---------ZAT2                              --------->At4g35610                              <---------At4g35610                              --------->ZAT2                    ------>ZmHOX2a(1)               -----                            <-----------RAV1(2)                --------->TOE2(3)                -----                          ================RAV               <-----------GT1                     -----                          ----------->RAV1(1)         ----------->GT1                 <---------GLK1(2) -DOF2                   ----------->HVH21--------->YAB1   <---------CCA1(2)    <-------TEIL    ----- --------DOF2 <----------DOF2 ----------->RAV1(2)  <------ZmHOX2a(1)         --------->At4g35610-----   cttttggagtttgactctttcttactagcgacagctggagttattcatgaacaggatagttatatccttatgtccaaacagatgcataaattctcaccaa  2249100                                                                         <-----------RAV1(2)                                                                       <-----------HVH21                                                                      --------->At4g35610                                                                      ===============================                                                                      --------->TGA1a     --------->CCA1(2)                                                <---------At4g35610    --------->ARR14(2)                                               --------->MYB59    <---------ARR14(2)                                              <-----------RAV1(2)            -- ->MYB83                                                          <-----------HVH21             <---- ---->ANAC58                    *TSS               <<<<<<<<<TBF1 <------MYB83                   ----- ---->ANAC58                  ==================================================bZIP_DOF <---------ANAC58 ->MYB46(1)                   <----------DOF2   <<<<<<<<<TBF1    <------MYB46(1)         <---------ANAC58 ---->AtLEC2               --------->ZAT6    <<<<<<<<<TBF1  <---------YAB1     xxxxxxxxxxxxxxx>smallRNA(fl3)   gcacaagataggcatttgaagagtggataacactttctcagtctttcttcttcttcttcgttgtgataggtcaggtcagggaacaacaatggcttcttct  2249200          --------->ARR14(2)          <---------ARR14(2)                                                                       --          <---------GLK1(2)                                                                        --         ------>MYB46(1)                                                                         ----         ------>MYB83                                                                            <---      --------->ANAC58                                                                           <---      --------->ANAC58                                                                         ------     ----------->RAV1(1)                                                                       <-----   --------->At4g35610                                                                        -------  ------->GAMYB                                             --------->ARR14(2)  <---------ANAC58----- --------->MYB46(3)                                ------>ZmHOX2a(1)        <---------GLK1(1) ------- =========MYC_MYB                               ------>ZmHOX2a(1)        ------>MYB46(1)      <------ --------->RAV1(1)                          <-----------GT1 <---------ARR14(2)  <---------ANAC58<---- -----HSFB2a(2)                            <-----------GT1 ------>MYB46(1)--------->REM1(1)   <------ ---->HSFB2a(2)                        <----------DOF2     ------>MYB83  ------>MYB83        <-------   gcaacagcaccaaattcgctatctttcttctcatcttctctctttttatcctcctctcaccaaatccctaaaacctacatttccgtttcaaaactcggct  2249300    <---------GLK1(2)   <------NtERF2 ---->NtERF2 ------->LBD16 ----->ATERF1(1)                                                                          --------->HSFB2a(2) ---NtERF2                                                                             <---------ARR11(1) ------LBD16                                                                           <-----------ARR10 --->ARR14(2)                                                                          --------->ARR14(2) ----ARR14(2)                                                                          <---------ARR14(2) -->At4g35610                                                                          ------->TEIL ->NtERF2                                    XXXXXXXXXXXXXXXXXXX>MIR3434              <---------CCA1(2) -->ZAT2<---------HSFB2a(2)       --------->At4g35610             <------ZmHOX2a(1) <---------ANAC55(2) ---At4g35610     <---------DAG2  --------->STY1(2)     <---------YAB1              --------->ANAC55(2) -----ATERF1(1)   <----------DOF2 --------->ZAT2   --------->GLK1(2)               <----------------- ---ZAT2--------->HSFB2a(2)       <---------ZAT2  <---------GLK1(2)           <------NtERF2 --ATERF1(1)   --------->RAP2.6(2)<---------At4g35610   <---------ATHB12    <---------DEAR3(1)    ---   ccggcagagtctcgaagccgctttctgtctcttcccagctagcgactctaccgattctatcattcgaaggagagaaggtcggagagacgtatctagacct  2249400              --------->ARR14(2)              <---------ARR14(2)          <------NtERF2         --------->LBD16        --------->DEAR3(1)        <---------ANAC46       --------->ATERF1(1)       --------->RAP2.3(1)       <---------LBD16       <------NtERF2      ------>NtERF2      <---------ATERF1(1)      <---------RAP2.6(1)      <---------RAP2.3(1)      <---------RRTF1(1)      <---------ERF1     --------->RAP2.3(2)     --------->DEAR3(1)     <---------DEAR3(1)          <---------ZAT14    --------->ATERF1(1)          <---------ZAT18    <------NtERF2                --------->ZAT14    --------->RAP2.6(1)      <---------MYB52(1)    <---------ABI4(2)       <-------GAMYB    --------->RRTF1(1)      <---------RAP2.6(3)    --------->ORA47(2)     <---------ANAC46    --------->ERF1     ------->PIF4    --------->DEAR4(2) <-------PIF4    --------->RAP2.3(1)------->MYC2   <---------DEAR4(2)  <-------MYC2   <---------ATERF1(1) <-------PIF5   <---------RAP2.3(1) ------->PIF5                                   --------->DEAR3(1)   <---------ORA47(2)  <-------MYC3                  ------->TEIL     <---------ANAC46  <---------RAP2.3(2)  ------->MYC3                  <---------ARR14(2)  <---------RRTF1(3)  <---------ANAC58               --------->ARR14(2) <---------------AtSPL3    ---  <---------DEAR3(1)  <---------ANAC58         ----------->HVH21     <------NtERF2             <----- ------TaNAC69(2)  <---------LBD16   --------->DEAR3(1)          --------->MYB52(1) <---------ALFIN1 ------->DOF2<------ZmHOX2a(1)   --------->ZAT18--------->MYB52(1) <---------DEAR3(1) <---------ALFIN1   caaagcggcgccggaggataccgcgcgtgccgttgtgcaccgagccatcgtgacggacctgaataacaagcggcgaggtactgcttccacactgactcgc  2249500                                                                ------>ZmHOX2a(2)                                                               <---------GLK1(1)                                                              <---------ARR14(2)                                                              <---------ARR11(3)                                                              <---------AGP1                                                             <---------CCA1(2)                                                           <------NtERF2                       <-----                                                           --------->ALFIN1                 <--------                                                         --------->ALFIN1                --------->ALFIN1                                                         <---------ANAC58            <---------LBD16                                                         <---------ANAC46        <---------ANAC58 <--            <---------MYB46(3)                           <---------ANAC58        --------->ANAC55(2)           <---------AtMYB61                      --------->O2--------->ARR11(3) <---------ANAC58----           <---------DEAR3(1)                     --------->ANAC58               <---------ANAC55(2)      <---------ANAC58   <---------MYB59          --------->ANAC58               --------->bZIP60(1)      <---------ANAC58   --------->TOE2(3)        --------->ANAC46            <---------MYB52(1) <---     <-------TEIL     <-----------GT1             <---------O2--------->ARR14(2) <---------bZIP60(1)< ------>At5g28300   --------->AHL20(2)            <---------TGA1a            <-----------HVH21 ------ ----LBD16 --------->ALFIN1                       --------->TGA1a       <---------ZAT14--------->LBD16   ggtgaagttcgtggtggtggaattaaaccttactcacagaagaaaactggccacgcgaggcgtggatctcagagaacaccgttacgtcccggtggaggtg  2249600  Previous    Next  AGI:  At1g07310.1    Description:  C2 domain-containing protein. similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23950.1); similar to unknown [Populus trichocarpa] (GB:ABK93791.1); contains InterPro domain C2 calcium-dependent membrane targeting (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB (InterPro:IPR008973) Range:  from: 2247508    to: 2248960    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07320.1    Description:  RPL4 (ribosomal protein L4); poly(U) binding / structural constituent of ribosome. Identical to 50S ribosomal protein L4, chloroplast precursor (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV1); similar to ribosomal protein L4 family protein [Arabidopsis thaliana] (TAIR:AT2G20060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21502.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78612.1); contains InterPro domain Ribosomal protein L4 (InterPro:IPR015498); contains InterPro domain Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005); contains InterPro domain Ribosomal protein L4/L1e; Range:  from: 2249132    to: 2250528    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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