Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  <------MYB83                                <------MYB46(1)                                                  <<<<                               <---------AtMYB61                                              <<<<<<<                      --------->ICU4                          <---------TOE2(3)            <<<<<<<<<TBF1                      <---------YAB1                          <---------TOE2(2)    ------>ZmHOX2a(2)          <---------ATHB12  <-----------RAV1(1)               <---------TOE1(2)  --------->ARR11(3)    <---------HSFB2a(2)--------->ATHB12              <---------WOX13(1)---------->DOF2  <<<<<<<<<TBF1    --------->HSFB2a(2)<--------ATHB1         <---------YAB1  <---------TOE1(3)  <---------ARR11(3)   aatgctctcgaaatcatctatagaatgattgtgttggtctcgagagtgaccattgatggactcgaaggttgaagaaagtagatgatcttcttcttcttct  2165100                                                                                                 <---                                                                                                 <---                               <---------ARR11(3)                            <---------AHL20(2) -----                       <---------ARR14(2)                                 <---------AHL20(1)    <----                       --------->ARR14(2)     <-----------GT1      --------->ANAC46             -----                       ------->TEIL      <----------DOF2         <---------ALFIN1            <-------                <----------DOF2--------->ARR11(3)               --------->ZAT14       <----------DOF2  <----------DOF2     <---------CCA1(2) <------------------------ANAC81   --------->AHL20(1) -------- <<<<<TBF1     --------->TOE2(3)     <---------CCA1(2)         <-----------HVH21   <-----------GT1 <<TBF1  --------->HSFB2a(2)  <---------CCA1(2)    <---------MYB52(1)     <---------ARR11(3)<--------   tcttctttcttcggcaacctttgtgtatccatatatctcttatctttttctctgttttgttttcccttcactccaatattttttttttctttgtaaatcc  2165200             <---------------AGL15      --------->ANAC46      --------->ANAC58      --------->ANAC58                                                      <---------TGA2(1) --------HVH21                  <---------------AGL15                       --------->TGA2(1) --------TGA1--------------->AGL15                                          --------->bZIP60(1) ---->ANAC46<-----------------AGL3                              <----------DOF2------->TEIL -----ANAC55(2)         <-------TEIL                            --------->TOE2(3)      <---------TOE1(1) ---->ANAC55(2)        --------->CCA1(2)                <----------DOF2--------->ANAC55(2) --ARR14(2) ====================================MADS_MADS  --------->YAB1   <---------REM1(1) ->ARR14(2) ----------------->AGL2                      --------->TOE2(3)   <---------bZIP60(1)  <--- -GLK1(1)   ----------------->AGL3    *TSS        --------->ALFIN1     <---------ANAC55(2)<---------bZIP60(2)   gtcaccatacgaaaactatatatagatacaaatacaatatttagagagcaaggtgtttctttaatactttaatatgtgatgtaactgatacgatgtggca  2165300                                   <------MYB46(1)                                 <---------WOX13(1)                                <------------CBF                               --------->ATHB12                              <---------YAB1                    --------->KAN4(2)                     <---------MYB59                   --------->KAN4(1)                      ----------------->AGL3                   <---------KAN4(1)                     --------->ANAC58        --------->DAG2      <---------At4g35610          --------->ANAC58                        ----       ---------->DOF2      <---------ZAT2        --------->ZAT2     <---------PCF5    ------>ZmHOX2a(1) ------At4g35610  <---------KAN4(2)<------MYB83   <---------ZAT2     <---------PCF2    <----------DOF2   tcttatcccaaaagtgatggaataatctcaagctgattggtttagagagtccagcttggacccaatttgagggacctctcttactggtcctttgcctcta  2165400                                                       <------------CBF                                                      --------->ATHB12                           <----------DOF2          <-----------TGA1                     <-----------GT1                <-----------HVH21          --------->ZAT6                 <---------DAG2                    <---------ANAC58          --------->YAB1                 <----------DOF2    ---------->DOF2<---------ANAC58---------->DOF2    <---------AHL20(2) ---->P    <-----------GT1<---------ICU4        ------>ZmHOX2a(1) <------ZmHOX2a(1)  --------->AHL20(2)   accagagaccatttagccacttttttcatctttatactaatagccgagtcctagcgtcattggggctaggaaagagctataacagtataaaatttccctg  2165500                                                                                            ---------                                                                                          <---------RAP2.6(3)                                <---------ARR11(3)                                       --------->RAP2.6(2)                  <---------ANAC58                              --------->ARR11(3)      <xxxxxxxxxxxx                  <---------ANAC58                             --------->REM1(1)        <xxxxxxxxxxxx                  <---------ANAC46                       --------->GLK1(2)             --------->At4g35610         --------->GLK1(1)      --------->ARR11(3)      <---------GLK1(2)     <------ZmHOX2a(1) <<<<<<<<<TBF1  *TSS       ---------->DOF2            ----------->ARR10    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ttcttcttcagaattcattttcttgtattcaaagtatcttaagttaagaagagaataagattcttacatcttgatgaagaggaatgggaagccgaaatct  2165600                                                                             ------>ZmHOX2a(1)                      --------->ICU4                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                      <---------ATHB12                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                 --------->ANAC58                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->ANAC58                                         XXXXXXXXXXXXXXXXXXXX>MIR847              --------->ATERF1(1)                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <------NtERF2                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)             <-----------HVH21                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)             <-----------TGA1                                       <----------DOF2             <---------ATERF1(1)                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <---------ANAC58                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->bZIP60(1)                        =============================HOX2a_HOX2a            <---------bZIP60(1)          --------->ARR11(3)      ------>NtERF2                  ----- >GLK1(1)   <---------ANAC58     <--------P            ------>ZmHOX2a(2) --------->ANAC46<---------REM1(1) xxxxxxxxxsmallRNA(le3)  <---------YAB1  <---------ARR11(3)------->TEILxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxsmallRNA(si3)--------->YAB1   --------->GLK1(1) <---------CCA1(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   aaactgaaacagaggcgtcacccaattatcaattggtaagtgatatctatgtttcgatctgtatctcggcctttcactcctcttcttcttgatgtaagaa  2165700                                           <---------AHL20(2)                                  <---------MYB52(1)                             <---------ARR11(3)                             --------->ARR11(3)     ----------->GT1                             --------->GLK1(2)  <-------TEIL                     <---------ANAC58      --------->AHL20(2)                     <---------ANAC58  <---------RVE1(1)                          <---------YAB1                     ----------->GT1   <---------CCA1(1)          <---------YAB1--------->YAB1      --------->ANAC46 ----------->GT1--------->ARR11(3)    --------->DAG2     ----------->GT1 ---->GLK1(2)        <---------ANAC46 <---------ARR11(3)   ---------->DOF2     --------->ICU4       -   tttgttattcgacacattagatggagtgaaaaatctgttagatatttatatacatgataaaaaaagttgtgatggaaggaaatgataataggtatgtttc  2165800                                                     <----------DOF2                                         --------->AHL20(2)                                         <                                         <---------AHL20(2)                             ---------->DOF2                ----------->GT1         --------->YAB1                         --------->AHL20(2)   <          ------->TEIL             <---------At4g35610                     <---------YAB1        <--- -------->AtMYB61             ----------->HVH21 <-----------GT1            ----------->GT1-----------   caccaatagatgaatatgtagaaaattagcaaatgacagctattaaaatttgacactttgacacatattacatagacatgataaaataagaaaagtatat  2165900                                                          --------->AHL20(2)                                                          <---------AHL20(1)                                                       --------->YAB1                                                      <---------YAB1                                                      <---------AHL20(2)                                                   <---------AHL20(2)                                               <---------AHL20(2)                            ------->TEIL      --------->AHL20(1)             --------->TOE1(3)             --------->AHL20(2)              <-------MYC3 ----------DOF2  ---------->DOF2           --------->YAB1 --------->AHL20(1)              --------->ARR14(2) ---------DAG2------>ZmHOX2a(1)            <---------AHL20(2) <-----------GT1             <---------ARR11(3) --------GT1 --------->TOE2(3)        <---------MYB52(1)  <---------AHL20(2)        <-----------GT1>> >GT1    <---------CCA1(2) <---------CCA1(2)  <---------AHL20(1)           ------->MYC3   <---------ARR14(2)   aacttttttttatatccttaaaagaaaatgtatctataccgctaattatatattttataattaattacacattaacacatgttgaattacaagatttgta  2166000  Previous    Next  AGI:  At1g07050.1    Description:  CONSTANS-like protein-related. similar to CIL [Arabidopsis thaliana] (TAIR:AT4G25990.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21391.1); contains InterPro domain CCT (InterPro:IPR010402) Range:  from: 2164187    to: 2165238    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g07051.1    Description:  MIR847a; miRNA Range:  from: 2165516    to: 2165745    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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