Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            ----------->RAV1(2)                          ========================RAV                      <---------ZAT2                      --------->At4g35610        <-----------GT1                      <---------At4g35610       --------->AHL20(1)                                 <- -->At4g35610         --------->ZAT2 --------->ANAC46                                              -- ---HSFB2a(1)      --------->At4g35610----------->RAV1(1)                                          <- -->HSFB2a(1)   <---------At4g35610--------->ANAC58                                          -------- -->HSFC1(2)    --------->At4g35610--------->ANAC46                    --------->ANAC46     --------- ---HSFC1(2)--------->ANAC46       --------->ANAC58             --------->YAB1              <--------   tcccattgaaacacacatagctgcagcagcctgagacacacaacacaaaatatactagtttaaaaatcaaaacccgatacaagaagaaaacagagatata  2120300     <---------WOX13(1)  <---------YAB1                         <-----------HVH21  <---------AHL20(2)              <----------DOF2  --------->AHL20(2)             <---------DAG2 --------------AGL15        <---------ARR11(3) ------------->AGL15        --------->ARR11(3)                   ------>ZmHOX2a(1) ---------DOF2            <---------YAB1<----------DOF2         --------->TOE2(3)              ------ ->CCA1(2)              <---------At4g35610                ------>ZmHOX2a(1)           <---------ALFIN1 >ARR11(3)    <----------DOF2 ====================================HOX2a_HOX2a     ------>ZmHOX2a(1) -ARR11(3)   --------->TOE2(3)------>ZmHOX2a(2)           --------->TOE2(3)  <---------At4g35610   gcttttaattgaaaacctttttggtctgatgatcccctttccctttcacttcatcttcatcctcatcctcatcttcttcatctccttccccatcttcctc  2120400                                       <---------ARR11(3)                                       --------->ARR11(3)                                 <-----------TGA1                                 <-----------HVH21                                --------->TGA1a                 --------->At4g35610                                --------->O2                <-----------TGA1               <---------HSFB2a(1)              <---------ICU4    <---------O2                <-----------HVH21     --------->LBD16              --------->YAB1    <---------TGA1a            --------->ANAC46      --------->ANAC46  --           <---------ICU4  <---------At4g35610            ------>ZmHOX2a(1)      <---------ANAC55(2)           --------->YAB1  --------->ZAT2                 =============================HOX2a_HOX2a---          <---------YAB1   --------->At4g35610        --------->ORA47(1)         --------->ANAC55(2)        <---------ICU4     --------->GLK1(1)         --------->DEAR3(1)          <---------HSFB2a(2)        --------->YAB1     <---------GLK1(1)       <---------At5g28300           --------->HSFB2a(2)  XXXXXXXXXXXXXXXXXXXX>MIR414   --------->ANAC46  <-----------GT1               ------>ZmHOX2a(2)---- >ZmHOX2a(1) <---------YAB1<---------ZAT2     <<<<<<<<<TBF1--------->bZIP60(2)  <---------LBD16<-----   atcatcttcatcatcatcatcatcttcagagctcccgtcactatcttcttcttcaccgtcctcgtcatcttcatcaatttgatccggaacagagccttcg  2120500                                                                              ----------->GT1                                                                              <------MYB46(1)               <---------YAB1                                                <---------AtMYB61           --------->ARR14(2)                                                --------->MYB46(2)       <---------LBD16        --------->ANAC58                               <---------MYB46(3)     --------->ARR11(3)       --------->ANAC46                               --------->MYB55(2)     <---------ARR14(2)      --------->ZAT18                                <---------MYB55(1)     <---------ARR11(3)    <---------ZAT18                                 <---------MYB52(1)     --------->ARR14(2)    <---------ZAT14                               ------>ZmHOX2a(2)    --------->CCA1(1)      --------->ZAT14                        --------->TOE2(2)    --------->RVE1(1) --------->At4g35610                         --------->TOE1(2)<---------bZIP60(1) ------->At5g28300    <---------At4g35610                        --------->MYB46(3)--------->bZIP60(1) -------->GT1 <XXXXXXXXXXXXXXXXXXXXMIR783                      <-----------GT1<------MYB83   -------- ----->LBD16 ------>ZmHOX2a(2)--------->ANAC58      <---------ATHB12    <------ZmHOX2a(2)    <------- ----LBD16 <---------ARR14(2)<---------ZAT18      --------->WOX13(1)   <---------MYB52(1)--------->ZAT6   gggtaaatatctggatcgtgaatgagcagagcacacaatccattctccaattcaatcactctgtataacctccgatcgtttggtgacttcaccactacat  2120600                                                                                       <---------ZAT2                                                                                       <---------At4g35610                                                                                       --------->At4g35610                                                                                       --------->ZAT2                                                                                    <---------At4g35610                                                                                 <---------ZAT2                                                                                 --------->At4g35610                                                                                 --------->ZAT2                                                                                 <---------At4g35610                                                                                <-----------RAV1(1)                                                                              <---------ZAT2                                                                              --------->At4g35610                                                                              <---------At4g35610                                                                             <-----------RAV1(1)                                                                           <---------At4g35610                                                                           --------->At4g35610                <---------GLK1(1)                                         <-----------RAV1(1)  ---------->DOF2  --------->ATHB12                                    --------->ARR14(2) ->ZAT14        --------->GLK1(1)                                      <---------ARR11(3)           < --ZAT14 ----------->HVH21 --------->ARR11(3)                          <---------ARR14(2)    ------>ZmHOX2a(1)   tgtccaaagccgagacggatttcattgaagacattgttctcgttttgagaagaagatagcgactggtgaacaagttctgctgctgctgcagcttcctctt  2120700                                       --------->LBD16                                       ------>NtERF2                                      ----------->RAV1(1)                                      --------->RAP2.3(3)                                      --------->RRTF1(3)                                      --------->RAP2.6(2)                                      --------->DEAR3(1)                                      --------->RAP2.3(2)                   --------->MYB46(3)--------->RAP2.3(1)                  --------->ANAC46   --------->RRTF1(1)                  --------->ANAC58  --------->LBD16                  --------->ANAC58  ------>NtERF2                     <---------AHL20(2)               --------->ZAT14  --------->ARR14(2)                    --------->AHL20(2)             --------------->AtSPL8--------->ANAC46                  --------->AHL20(2)             <         <----------DOF2  --------->ARR14(2)                    <---------MYB52(1)                  -        <---------ANAC58  <---------ARR14(2)*TSS              <---------ANAC46                      <        <---------ANAC58  ------->TEIL--------->RRTF1(2)     ---------->ID1      ---------->DOF2    -  --------->ARR11(3)   <---------ATHB12<------NtERF2  <---------YAB1<---------YAB1--------->DAG2    < ---------TOE1(2)------->TEIL   <---------ARR14(2)  <---------At4g35610     ----------->GT1         -   cttaggtcttgcttctctgtacccaatgaatccgattccgccgcaaatgccttctgatgatttttcgtttattaaaaaatgtaaaaagttagaagcagtg  2120800         <---------MYB52(1)        <---------RAP2.6(3)             <-----------TBP        <<<<<<<<CAMTA3      ---------->ID1                    <---------MYB52(1)   --------->ANAC58                       <  <---------ANAC58                    <---------------AGL15  <---------ANAC55(2)                    <  <---------ANAC58                    --------------->AGL15  --------->ANAC55(2)                    < ---------ARR14(2)                    ----------->GT1   --------->ANAC46                ----------->GT1 -------->ARR14(2)                    <---------ANAC46  --------->ANAC58               --------->ANAC58 ---------ARR11(3)       <------------CBF               <----------ID1                 --------->ANAC58 -------->ARR11(3)     --------->ARR11(3)    ----------->GT1 --------->ANAC58        --------->MYB52(1) -----------ARR10 --------->STY1(1)  ----------------->AGL3<---------ALFIN1  <---------TOE2(3)------- -------->GLK1(2) <---------STY1(1) <---------At4g35610 --------->ANAC58    ---------->DOF2  --------   agtatcttgccgttttctccctagggatattgaatgtgagccgtttatagtaaataaaacgacacgcgtttctatttttaaagatggaaacggcaaaaag  2120900                                                                                          *TSS                                                                                          ------>MYB46(1)                                                                                          ------>MYB83      <----------DOF2                                          <------------CBF         <---------MYB59 ---------YAB1                                                --------->DAG2            --------->TOE2(3) ---------TOE2(3)                                        ----------->GT1         <-----------GT1  <-- ---------TOE1(3)                                      ----------->GT1        ----------->GT1    <--- -->DAG2                                              --------->DAG2          --------->ALFIN1<------ -->DOF2                                             ---------->DOF2          <---------ZAT6<--------   ttatggttctttcttccatcgcttcgttttcgcctctgtaatcggaagaaaatcgaaaagtgaaaaattggaaatttgaagtgttacaaacctaattgac  2121000                                                                                <---------WOX13(1)                            <---------ARR14(2)                                  <--------P                            --------->ARR14(2)                                 <-------GAMYB                           <---------ARR14(2)                                 <------MYB46(1)                           --------->ARR14(2)          <---------------AGL15  <------MYB83                           <---------GLK1(2)           --------------->AGL15  <---------MYB46(3)        <-----------GT1 <---------ANAC55(2)        --------->GLK1(1)       <---------ANAC58   ------>ZmHOX2a(1)    --------->ANAC58           <---------GLK1(1)       <---------ANAC58 --------DOF2           --------->ANAC58  <---------------AtSPL8          --------->ATHB12 ------DAG2             --------->ANAC55(2)     --------->ICU4        <---------ICU4 -----GT1             --------->CCA1(2)   <---------------AtSPL3     <---------ATHB12     ----------- -WOX13(1)        <---------HSFB2a(2)    ---------->DOF2    ---------->DOF2<---------ANAC46   ctttcctgtgtaacccaattcgagagacggaatcggcgagtgagaaagtactgatttctctaaaaagcccaaacattgcttggttgatttagcaacaatg  2121100                                                                                                    -                                                                                           <---------                                                                                           --------->ARR14(2)                                                           <---------ANAC46                --------->GLK1(2)                                      <---------AtLEC2<------MYB83                         --------->ARR11(3)                 --------->ANAC58 --------->GLK1(1)   <------MYB46(1)    --------->GLK1(2) <---------ARR14(2)                 --------->ANAC58--------->ARR14(2)<------ZmHOX2a(1)    <---------GLK1(2) <---------ARR14(1) >RAV1(1)--------->ALFIN1<---------HSFB2a(2)     <---------TOE2(3)    ----------->ARR10   <---------GLK1(2)   gcactctcgcagtggaaggaagctatactcgaagggattttcatggagattgaggatggtattgtggaagagaagaatctcgagcgattagagaatcttg  2121200  Previous    Next  AGI:  At1g06900.1    Description:  metalloendopeptidase. similar to peptidase M16 family protein / insulinase family protein [Arabidopsis thaliana] (TAIR:AT2G41790.1); similar to hypothetical protein OsJ_010322 [Oryza sativa (japonica cultivar-group)] (GB:EAZ26839.1); similar to hypothetical protein OsI_011148 [Oryza sativa (indica cultivar-group)] (GB:EAY89915.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21314.1); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Metalloenzyme, LuxS/M16 peptidase-like, metal-binding; (InterPro:IPR011249) Range:  from: 2114926    to: 2120744    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g06910.1    Description:  TRFL7 (TRF-LIKE 7); DNA binding / transcription factor. similar to TRFL5 (TRF-LIKE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G15720.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65086.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 2120990    to: 2123747    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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