Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          --------->ATHB51                   <---------YAB1                                                        <---------ICU4          <---------AHL20(2)                                                       <---------YAB1        <---------AHL20(1)                                --------->YAB1         --------->ICU4        --------->AHL20(1)   <--          <---------ETT(2)   --------->GLK1(1)       --------->YAB1   <---------TOE2(3) <---------YAB1         ---------->ARF1     <---------GLK1(1)      <-------TEIL  --------->ARR11(3) <---------AHL20(2) ---------ICU4      <---------YAB1              <---------YAB1   <---------CCA1(2)<---------AHL20(2)   cataactacatgtctaccatgtattatagggatatcaaaatggtctatacatgattcattatttcatatatctaggttatatattattttcttatagttg  2108200                                                 --------->ANAC58                                                 --------->ANAC58                            --------->TOE2(3)    --------->ANAC46                           ----------->GT1  ----------->HVH21               --------->ARR11(3)           ------->GAMYB               --------->AHL20(1)          <---------MYB52(2)               <---------AHL20(1)         <---------At4g35610                              --------->RAP2.6(3)               <---------ARR11(3)         --------->At4g35610                             <---------ARR14(2)              --------->CCA1(1)      ----------->HVH21                        --------->TOE2(3)              --------->RVE1(1)    <---------ANAC55(2)   <---------TOE2(2)    <----------DOF2 -------WOX13(1)  <----------DOF2  --------->ANAC55(2) --------->TOE2(2) <----------DOF2  --------->ARR14(2)   atttataaacaccaaaatatctttagcaaatgttaatatgtgacaactgacaagaaacataggttgtgctaatgtctttactttaaaattcaaatcggct  2108300                                                                <---------AHL20(2)                                                                --------->AHL20(2)                                                          <----------DOF2                                                   <---------ANAC58                 --------->ANAC58                  <---------ANAC46--------------->AtSPL8                 --------->ANAC58                  <---------ANAC58<---------------AtSPL8 <---------AHL20(2)        ----------->GT1     <---------AHL20(2)  <---------------AtSPL3 --------->AHL20(2)  ---------->DOF2--------->MYB52(1)<---------ZAT18                    <-----------GT1   taaaaaattatgttcttacgagcaaaagattgaaaaaaaaacgatgaaatttatcgtgtgcttttattaattgtacatctaaaaatgtattaaacaattt  2108400                                                     <----------DOF2                                           --------->ANAC58                  <---------YAB1                                           --------->ANAC46                --------->AHL20(2)                                           --------->ANAC58                <---------AHL20(2)                      ----------->GT1     ------>MYB46(1)                 --------->AHL20(1)                      --------->YAB1      ------>MYB83                    <---------AHL20(2)                <-----------GT1          <---------ALFIN1<-----------GT1  <---------AHL20(1)       ----------->RAV1(1)              --------->MYB46(3)                --------->AHL20(2) --------------->AtSPL8       ----------->GT1    <---------ALFIN1     <---------YAB1              ---   tgctcagtacaacaaaattcacaattgtaattttgtgaaatacccactccaccatctttttatcagataattctaatttatttttgtcaatgttatagcc  2108500                     <---------ICU4                     --------->ATHB12                     -------->HAHB4                    --------->ICU4                    <---------ATHB51                 <---------AHL20(2)           --------->ANAC55(2)                                                                      -           <---------ANAC58                                                                        --           <---------ANAC55(1)                             ----------------->AGL2                 ---           <---------ANAC58                                <-----------------AGL3                 <--           <---------ANAC46                          ---------->DOF2            <------------CBF  <--           <---------ANAC55(2)                      <---------AHL20(2)        <---------AHL20(2) ----       <---------ANAC58                     ----------->GT1<-----------------AGL2            --------       <---------ANAC58          <---------YAB1   <-----------TBP   ---------->ID1          *TSS ---- ------>ICU4     --------->AHL20(2)       <------------CBF <-----------------AGL1<---------WOX13(1)--   atttttgatacttgcgtatttaattatgggatattatgaatagaaattgtatatttaaaggcccatttttggccctaaatgtaattgatgactcaactca  2108600                                                                ------>ZmHOX2a(2)                                                               --------->GLK1(1)                                                               <---------GLK1(1)                                                               <------ZmHOX2a(2)                                                              --------->ARR14(2)                                                              <---------ARR14(2)                                                              --------->ARR11(3)                                                              <---------ARR11(3)                                                              --------->ARR14(3)  --------->MYB46(3)                                          <---------ARR14(3) ------>MYB46(1)                                             --------->GLK1(1) ------>MYB83                                                <---------GLK1(1) ---------->RAV1(1)                                     <---------HSFB2a(2) ----->GAMYB                                            --------->HSFB2a(2) ------>MYB46(3)                                       <---------LBD16 -------MYB55(2)                                      =================HOX2a_HOX2a           ------>NtERF2 -------MYB52(2)                                      ================HOX2a_HOX2a           --------- ----->ANAC58                                    ------>ZmHOX2a(1)                          --------- ->ANAC46   >>>>>>>>>TBF1           --------->AtMYB61 ------>ZmHOX2a(1)        <----------DOF2------- ----->ANAC58                   <---------ETT(2) =====================HOX2a_HOX2a           <-------- ------->AtMYB61             <----------DOF2     ======================HOX2a_HOX2a         <---------LBD16   accaacaacaagaagaagaagactctctctgctttcgaccaaaaccttctcctctcctctgggagatctccatcttcttcgcttcttcgcttccccgcct  2108700                            --------->ANAC58                            --------->ANAC58               --------->HSFB2a(1)                       <------NtERF2                  ========================HOX2a_HOX2a                      --------->LBD16                 <------ZmHOX2a(2)                    <------NtERF2                    --------->ARR14(2)                    --------->ATERF1(1)              <---------ARR14(2)                    <---------LBD16             ------>NtERF2                   --------->LBD16             --------->HSFB2a(2)                   <---------RAP2.3(1)         <---------ATERF1(2)                   <---------ORA47(2)          --------->ANAC46                   <---------ERF1              <---------RAP2.6(2)                   <---------ATERF1(1)         --------->ATERF1(2)                   ------>NtERF2               <---------HSFB2a(2)                  --------->DEAR3(1)           <---------LBD16                  <---------RAP2.3(2)         <---------LBD16                               ------>ZmHOX2a(1)                  --------->ATERF1(2)         --------->RAP2.6(3)                    <---------ARR11(3)                  <---------DEAR3(1)       <----------DOF2 --------->HSFC1(2)        --------->ARR11(3) >DEAR3(1)        <---------ATERF1(2)    <---------------AGL15                    --------->HSFB2a(2) >ANAC46         <---------LBD16        <-----------------AGL1         ------>ZmHOX2a(1)   --------->TOE2(3) ---->RAV1(2)    --------->ATERF1(1) <---------MYB52(1)  <---------GLK1(2)    <----------DOF2 -ALFIN1     ------>ZmHOX2a(2)<---------ARR11(3)--------->LBD16       --------->TOE2(3)    --------->TOE1(3)   gaaacaattactcgatctcgccggcggaacaagctctccgtttctctttccggcagatcgattcttccaattccttattcctttctaggtcttccttaag  2108800                                                                                                -----                                                                                                <----                                                                                           <------NtERF2                                                                                           ----------                                                                                          --------->LBD16                                                                                          ------>NtERF2                                                          --------->ZAT2               ------>NtERF2<                                                    ------>MYB83                      ===============                                                    -------->P     <---------ANAC58   --------->ANAC46                 <---------ARR11(3)               <---------MYB46(2)                  ------->GAMYB <                 --------->ARR14(2)               <---------MYB111(1)  <------ZmHOX2a(1)<---------LBD16                 <---------ARR14(2)         --------->TOE2(3)      <---------ANAC46   ===============                 --------->ARR11(3)         --------->TOE1(3) <-----------RAV1(1)    --------->MYB46(3)                 --------->GLK1(2)   <---------TOE2(3)    <---------At4g35610  <---------ANAC58 -----       <----------DOF2               <---------TOE1(3)    <---------ZAT2       <---------ANAC58 <----   <---------MYB52(1)  <----------DOF2<---------ZAT6------>MYB46(1)<---------ANAC58 <---------At4g35610   aaacccttactttcttcaaaatctgcatttatggcgattagggttaccttcacctactccagctatgttgctaggagcattgcttcatccgccgggactc  2108900               <---------MYB52(1)             <---------TGA1a             --------->O2             <---------O2          <---------DEAR3(1)          --------->DEAR3(1)          ----------->HVH21       --------->TOE1(2)       --------->ATERF1(2)                                 --------->RAP2.6(2)       <---------ATERF1(2)                              ------>NtERF2      --------->DEAR3(2)                                <---------ATERF1(1)      --------->ATERF1(1)                               --------->RAP2.6(2)     --------->MYB52(1)                                <---------RAP2.6(2)     --------->SPL7                                   <---------LBD16    <---------ARR14(2)                                --------->At4g35610   <---------SPL7                                 --------->ARR14(2)  <---------DEAR3(2)                              <---------ARR14(2) <---------At1g77200                             <---------GLK1(2) --------->ETT(1)   <------ZmHOX2a(2)          --------->LBD16       --------->CCA1(2) ---->TGA1a <------NtERF2                      <---------TOE2(2)    <---------ARR14(2)             -- -----TGA1a------>NtERF2                       <---------TOE1(2)   --------->At4g35610            <-- ->HVH21 --------->RAP2.3(1)                  ===================RAV--------->ARR14(2)           ---- <<<<<<<<<DREB1A   <---------ARR11(3)         <-----------RAV1(2)--------->YAB1                  <--- ======================MYC_MYB                =========================RAV --------->ARR14(2)  ------ <<<<<<<<<DREB2A   --------->ARR11(3)    <---------ANAC58  ----------->RAV1(1)              <-------- =====MYC_MYB--------->TGA1a             <---------ANAC58------>NtERF2     --------->ARR11(3) ------- ---->O2--------->LBD16<---------YAB1   <-------TEIL  <---------At4g35610  <---------ARR11(3) ------- -----O2--------->ANAC46          --------->TOE2(2)  <-----------RAV1(1)   <---------ARR14(2)<-------   gtgtcggtaccggcgacgttagatcatgcttcgaaacatgggttcgtcccaggttctgcggccacaatcagataccagatattgttgataaatctcccgg  2109000      ------->MYC3      <-------MYC3   <---------ALFIN1 ----------->RAV1(1)                                                         <---------HSFB2a(2) ---->ZmHOX2a(2)                                                             ------>ZmHOX2a(1) ----ZmHOX2a(2)                                                          --------->ARR14(2) ----->ARR14(2)                                                          <---------ARR14(2) ------ARR14(2)                                    <<<<<<<<<EIN3        --------->GLK1(1) --->LBD16                                    <---------YAB1            <---------GLK1(1) -LBD16                      <-------PIF5   --------->REM1(1)    <---------ANAC58                ---- -->LBD16                    ------->PIF5  <-------TEIL          <---------ANAC58                <--- -->HSFB2a(2)    <---------ZAT2         --------->At4g35610      <---------ANAC46        <------NtERF2 --LBD16         --------->ZAT2         --------->ZAT2      --------->ATHB12 --------->HSFB2a(2) <---   atccaacacatggggtccaagctcaggccctcgtgctcgaccagcttcatcaatgtatagcaccattgcgagggaaatcctcgaagaaggctgcaagagt  2109100  Previous    Next  AGI:  At1g06870.1    Description:  signal peptidase, putative. Identical to Probable thylakoidal processing peptidase 2, chloroplast precursor (TPP2) [Arabidopsis Thaliana] (GB:Q9M9Z2;GB:Q8LEC9); similar to chloroplast thylakoidal processing peptidase [Arabidopsis thaliana] (TAIR:AT2G30440.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78280.1); contains InterPro domain Peptidase S26A, signal peptidase I; (InterPro:IPR000223); contains InterPro domain Peptidase S24, S26A, S26B and S26C (InterPro:IPR015927); contains InterPro domain Peptidase S26A; (InterPro:IPR014037); contains InterPro domain Peptidase S24, S26A and S26B, C-terminal (InterPro:IPR011056) Range:  from: 2108592    to: 2110985    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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