Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ANAC58                                                           --------->ANAC58                                                        --------->AtMYB61                                                        --------->TOE2(3)                                                      ------>MYB46(1)                                                      ------>MYB83                                                      -------->P                                                     --------->MYB55(1)                                                    <---------MYB111(1)                                                    <---------ALFIN1                                                    --------->DEAR3(1)                                   --------->ALFIN1 <---------MYB111(2)                                 <-----------RAV1(1)--------->MYB46(3)                           --------->YAB1           --------->AtMYB61                          <---------ATHB12          <---------MYB46(2)                        --------->WOX13(1)      <---------ZAT18 -----ZmHOX2a(1)      <---------ATHB12          --------->ZAT18      ---------->DOF2 ------TOE2(3)        <------ZmHOX2a(2)         <---------ZAT14 --------->ARR14(2) ---WOX13(1)     ------>MYB46(1) --------->ALFIN1   <---------MYB55(2) >ATHB12         ------>MYB83--------->At4g35610--------->ZAT14 <---------ARR14(2)    <---------YAB1   aggaaaaaccgagcataccttccgatcaatgagcagtgtggctcaaatactgcaccaacctaagcaaaaccgaaagaagaagggaagtatgatgcccatt  2047400                                                                                   --------->TOE2(3)               --------->YAB1                                                    --------->GLK1(2)          <---------AHL20(2)                                                    --------->ARR14(2)         <----------DOF2                                                        <---------GLK1(2)     ---------->ID1        <---------MYB46(3)                                <------------MYB.PH3(1) <----------DOF2   <----------DOF2 <---------YAB1              --------->ETT(2) <---------ARR14(2)   ccactttggtgttttaatgagcatttcggtgtttgtcatgaaaccaagttttgaaatggcacttgtctacataagtgtaacagattcttaatttcaacaa  2047500                                                                                   ---------->DOF2                                                                              ------->TEIL                                                                           --------->ANAC58                                                                           --------->ANAC58        --                                                                       --------->ANAC46            --                                                                       --------->ANAC58            --                                                                    --------->ARR14(2)             <-                                                                    <---------ARR14(2)            <--                                                ----------->GT1    --------->CCA1(2)              <--                                                --------->YAB1    <---------ARR11(3)              ---                                       <---------MYB52(1)       <---------TOE2(3)<---------------AGL15                                      <-------GAMYB     <---------TOE2(3) ------->TEIL       --------                                 <---------ANAC58      <-----------GT1 --------->ANAC58      --------                                 <---------ANAC58--------->TOE2(3)--------->ARR11(3)       ----------   ttttgttagataatttgtattcattctcacttagtgcttccgttgttctatcgttataaacgttttaagatatacgcatgtaactgaaagaagaaaagcc  2047600 ------->ATHB51 ------>ATHB1 ------->ATHB12 --------ICU4 -------YAB1                               --------->CCA1(2) -------ATHB51<---------ZAT14             --------->ARR11(1)     <---------ZAT6 ------>ICU4  --------->ZAT14    ----------->GT1                 ----------->GT1 ->ANAC58  --------->ZAT14     --------->At4g35610         <---------ANAC58                         < ->ANAC58  <---------ZAT14     <---------At4g35610         <---------ANAC58                     <---- >DOF2------>ZmHOX2a(2)   <---------ZAT6  <---------ARR11(3)<----------DOF2                     <----   attattgatccagtactgtagtgtcttagtgtgagcagaaaaaagatttgatcatggaatggctttagagtaaaatactaaaatagatggaatcgaaggc  2047700                                        --------->ALFIN1                                       <-------MYC3                                       ------->PIF5                                       <-------MYC2                                       ------->MYC4                                       ------->MYC3                                       <-------PIF5                                       <-------MYC4                                       ------->MYC2                                      --------->O2                                      --------->PIF3(3)                                      <---------PIF3(3)                                      <---------O2                                      <<<<<<<<<<HY5                                      --------->TGA1a                                      >>>>>>>>>>HY5                                      ================================MYC_MYB                                      <---------bZIP60(2)                                      <---------TGA1a                                    <---------ALFIN1           --------->ALFIN1        ---------------->PIF3(2)         <---------O2             <-----------HVH21                                               ---         <---------ANAC58         <----------------PIF3(2)                                   --------         <---------ANAC46      <---------At4g35610                                          ------>ZmHOX2a(1)         <---------bZIP60(2)   --------->At4g35610                                        ------>ZmHOX2a(2)         <---------TGA1a      --------->GLK1(2)                                          <------ZmHOX2a(2)         =========================bZIP_DOF                                              --------->AGP1         --------->TGA1a      <---------ARR14(2)                                        --------->ARR11(3)         --------->O2         <-----------ARR10                                         <---------ARR14(2)         <---------ANAC58     <---------ARR11(1)                                        --------->ARR14(2)      ----------->HVH21       ------->TEIL                       <---------DAG2         <---------ARR11(3)      ----------->TGA1        --------->ARR14(2)                 --------->TOE2(3)      --------->ARR14(3)    <---------At4g35610      <---------CCA1(2)                  ----------------->AGL1  <---------GLK1(2)   --------->GLK1(2)         <---------ARR14(1)         --------->TOE2(3)              --------->GLK1(1)   ------->TEIL            <---------ANAC58          <---------ALFIN1                  <---------GLK1(1) ---------YAB1             <---------ANAC58 ------------>CBF  ------->GAMYB           ----------->ARR10 -----ANAC58           ---------->DOF2--------->bZIP60(2)    --------->MYB46(3)   ------->GAMYB   <-- -----ANAC58           =========================bZIP_DOF--------->AtMYB61      ----------->RAV1(1)<--   ttatgaatctgacgtggaacaagaagaaagcgtatctgccacgtggcacaatacaacacctcaacagccttatctggacatcaacagagagatcctccaa  2047800               --------->YAB1              <---------ATHB12             ------>MYB46(1)             ------>MYB83            --------->WOX13(1)          ------------>CBF          --------->MYB46(3)          <---------MYB55(2)          <---------ATHB12         ------>MYB83         ------>MYB46(1)         -------->P                                            ------>ZmHOX2a(1)         --------->ANAC58                                --------->MYB46(3)       --------->AtMYB61                                ------>MYB46(1)      <---------MYB52(2)                                ------>MYB83      --------->MYB46(3)                               ----------->RAV1(1) --------->ANAC46                                     --------->AtMYB61 ------>ARR14(2)                                   --------->ANAC58                         --------- ---->CBF--------->ANAC58 *TSS   <-----------GT1   --------->ANAC58          --------->YAB1 --------- -------ARR11(3) --------->At4g35610               --------->ANAC46       <----------DOF2   --------- -------ARR14(2) <---------At4g35610        --------->TOE2(3) --------->TOE2(3)   --------->TOE2(3)   tatccgaaaccaaccaatcagcttcactcttggtttcacctccatacattaacacaccaacaatcctcaaaaaacactttcataacttaatcacacacaa  2047900                                                                                             --------                                                                                            =========                                                                                            <------ZmHOX2a(2)                                                                                            =========                                                <---------ANAC58                           <---------ARR11(3)                                                <---------ANAC58                         --------->ANAC58                                          <---------ZAT14                                --------->ANAC58                                          --------->ZAT14                               --------->SPL7                                        <---------SPL7                                <---------SPL7                                       <---------ANAC58                              --------->RAP2.6(2)                                       <---------ANAC58                              --------->DEAR3(1)                                       <---------ANAC46                            --------->At4g35610                                      <---------------AtSPL8        --------->ZAT18<---------At4g35610                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->REM1(1)    --------->At4g35610 >ANAC58          ---------->DOF2 <---------ICU4<---------ANAC46  <---------ZAT18--------->MYB46(3) >ANAC46   ------------------------>ANAC81--------->SPL7   --------->ANAC46     <---------At4g35610 >ANAC58  ---------->DOF2       --------->ARR11(3)       ------>ZmHOX2a(1)    --------->REM1(1)   ---   ggagagaagagagaaagagagaaagagagacagagataatggcgtacagtgcgtgtttcctacaccagagcgcattggcttcatcagccgcacgatcatc  2048000                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                   <-                       --------->ALFIN1                                                            --                       <-----------RAV1(1)                                                         --                      <-------MYC3                                                                ---                      ------->MYC3                                                                ---                      ------->MYC2                                                               ----                     <---------O2                                                               -----                     <---------ANAC58                                                           <----                     --------->O2                                                           ---------                     --------->TGA1a                                                       ------>NtERF2                     <---------TGA1a                                                       <---------ATERF1(1)                     <---------bZIP60(2)                                                   <---------                     =============================================bZIP_DOF                --------->DEAR3(1)                     <---------ANAC58                                                     --------->RAP2.3(3)                     <---------ANAC55(2)                                                  --------->RAP2.3(2)                     <---------ANAC55(1)                                                 --------->RAP2.3(1)                     --------->ANAC55(2)                                                 --------->ORA47(2)                 <-----------HVH21                     ---------->DOF2                  --------->LBD16    ------>ZmHOX2a(1)<---------ANAC46             --------->At4g35610                   ------>NtERF2 ->YAB1------>ZmHOX2a(1)<-----------HVH21      <------ZmHOX2a(2)                        <---------ATERF1(1) ==========HOX2a_HOX2a<-------MYC2            <---------ARR11(3)                       --------->DEAR3(1) =============HOX2a_HOX2a                     --------->ARR11(3)                       --------->ANAC46 ------>At4g35610<-----------TGA1            <---------At4g35610 ------->GAMYB        <---------LBD16   atcttcctcctcatcccagcgtcacgtgtcgctctccaaacctgttcagatcatctgtaaagctcaacagtctcatgaagacgataactccgccgtctcc  2048100                                       <------MYB46(1)                                   <---------MYB46(3)                                   <-----------RAV1(1)                                   ===============================RAV                                 --------->At4g35610                                 <---------At4g35610                                 <---------ZAT2                              ------>NtERF2                              --------->At4g35610                              <---------At4g35610                             --------->RAP2.3(2)                             <---------DEAR3(1)                             --------->DEAR3(1)                            --------->ORA47(2)                            --------->RAP2.6(1)                            --------->DEAR4(2)                            --------->RAP2.3(1)                            --------->RRTF1(1)                            --------->ATERF1(1)                            <------NtERF2                           --------->ABI4(2)                           <---------RAP2.3(1)                           ------>NtERF2                           <---------RAP2.6(1)                           <---------ATERF1(1)                           <---------ORA47(2)                           <---------ERF1                           <---------DEAR4(2)                           <---------RRTF1(1)                          --------->ANAC46                          <---------RAP2.3(2)                      <------NtERF2                          --------->DEAR3(1)                       --------->ATERF1(1)                          <---------DEAR3(1)                      <---------ATERF1(1)                         --------->RAP2.3(1)                      ------>NtERF2                         --------->ATERF1(1)                     --------->DEAR3(1)                         <------NtERF2 <---------DEAR3(2)        --------->RAP2.6(2) <---------RAP2.6(3)    <---------RAP2.6(1)                     --------->ATERF1(1) ------>NtERF2          <---------RRTF1(1)                      --------->RAP2.3(1) -------->RAP2.3(2)     <---------DEAR3(2)                  --------->At4g35610 -------->RAP2.3(3)     <---------ERF1 <------MYB83         <---------At4g35610 -------->DEAR3(1)      <---------ATERF1(1)              <---------At4g35610 -----NtERF2            <---------RAP2.3(1)              --------->At4g35610         <---------ANAC58 ------->DEAR4(2)       <---------ORA47(2)               <---------ZAT2              <---------ANAC46 ------->RAP2.3(1)      ------>NtERF2<---------MYB52(1) ------>ZmHOX2a(1)            <---------ANAC58 ------>LBD16          <---------DREB2C(2)             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --->NtERF2            <---------At1g77200            ----------->RAV1(2)       --------->ALFIN1 ----->ANAC46          <---------RAP2.3(3)        <---------ARR14(2)          <---------At4g35610 ---->MYB46(3)         <---------DEAR3(1)         --------->ARR14(2)       ---------->DOF2       ---- -----LBD16            <---------RAP2.3(2)        <---------ARR11(3)  --------->SPL7<-------TEIL ---- >ATERF1(1)          <-----------HVH21 <---------MYB46(3)----------->RAV1(2)  <---------ZAT2     <--- --HVH21           ------>ZmHOX2a(1)<-------GAMYB --------->ARR11(3)--------->DEAR3(1)      ---------   cgccgtcttgctctcactctcctcgtcggcgccgctgctgttggttccaaagtatctcctgctgatgccgcctacggtgaagctggtgcgtttataaaat  2048200     --------->TOE1(2)                                                                           <---     --------->TOE2(3)                                                                      <--------     --------->TOE2(2)                                                              <-----------RAV1(1)     --------->TOE1(3)                                                              --------->MYB52(2)  <-----------GT1                 --------->GLK1(2)                     <---------AHL20(2) <---------At4g35610 ----->AHL20(1)                   --------->ARR11(3)                   <---------YAB1<-------GAMYB ----->AHL20(2)                  <---------GLK1(2)                    <---------AHL20(2)   --------->At4g35610 ------AHL20(2)         --------------->AGL15              <-----------GT1  <---------AHL20(2)   ---- >AHL20(2) <------ZmHOX2a(2)  >>>>>>>>>TBF1   --------->ARR11(3)  ------>ZmHOX2a(1) <---------MYB46(3)   aaaataaccttggatcatttcattttcttgaagaagaatcttgaagaacatattgtgtttttttcatcctatttttattttttggtttgttgcagcaaac  2048300  Previous    Next  AGI:  At1g06670.1    Description:  NIH (NUCLEAR DEIH-BOXHELICASE). similar to HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM), ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G30800.1); similar to hypothetical protein OsI_003809 [Oryza sativa (indica cultivar-group)] (GB:EAY75962.1); similar to hypothetical protein OsJ_003494 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13669.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69972.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374); contains InterPro domain Helica Range:  from: 2040432    to: 2047611    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g06680.1    Description:  PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2); poly(U) binding. Identical to Oxygen-evolving enhancer protein 2-1, chloroplast precursor (PSBP1) [Arabidopsis Thaliana] (GB:Q42029); similar to PSBP-2 (photosystem II subunit P-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G30790.1); similar to Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (GB:P11594); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Twin-arginine translocation pathway Range:  from: 2047826    to: 2049417    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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