Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         ---------->DOF2          --------->At4g35610       ---------->DOF2       <---------At4g35610     ---------->DOF2       --------->At4g35610  --------->ANAC58                --------->At4g35610  <---------YAB1            --------->AtLEC2      --------->ANAC58 -------->YAB1              --------->ANAC58      --------->ANAC58 -------->ATHB12         <------ZmHOX2a(2)       --------->DAG2           <---------LBD16<---------ZAT14 ---------ICU4          <---------ARR11(3)      ---------->DOF2    <---------ICU4   <---------ANAC46 --------YAB1           --------->ARR11(3) ----------->GT1 --------->GLK1(2)        <---------ANAC58 -----ZmHOX2a(2)       <------ZmHOX2a(1)  --------->At4g35610  ---------->DOF2      <---------ANAC58-   gatcattgtagcagcaaaattgacaggatcatgcaaagaaaagaagcggaaaaagcaagagaagctaaagaattactctggaattggcgagtgaagaatg  2040000                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  ---                                             <---------HSFB2a(2)                                  <--                                       <---------At4g35610                                        <--                                       --------->At4g35610                                       <---                                  --------->ANAC58                                             ------                                  --------->ANAC58                                             <-----                                  <------NtERF2                                                ------                                 --------->LBD16                                               ------                                 ------>NtERF2                                                <------                                 <---------LBD16                                            <--------                                <---------ANAC58                                            ---------                                <---------ANAC46                  --------->ZAT14           <--------                                <---------ANAC58      --------->ANAC58                ------->TEIL<--                             <-----------RAV1(1)      --------->ANAC46                --------->GLK1(2) -------->CCA1(2)            ----------->HVH21        --------->ANAC58  ----------->GT1     ---------   agagacgagattactagtagagcgattgtctctggcgcggaagcagtcgagaaaacaagccatggctctacagactgataaatcgatgaatctgagcacg  2040100  --------->ZAT18 ----->ZmHOX2a(2) -----ZmHOX2a(2) ------->At4g35610 ------->GLK1(1) ------>ARR14(2) ------>ARR11(3) ---->TEIL -------ARR14(2) ---------ARR10 ------CCA1(2) --->ANAC58 ----ANAC55(2) --->ANAC58 --->ANAC46              <-------TEIL                                                        -------- ---LBD16      <---------TOE2(2)                                                            <-------- -ZAT14        <---------TOE1(2)                          ------>ZmHOX2a(1)        --------->ANAC58 >ZAT14        <---------TOE2(3)                         --------->TOE2(3)         --------->ANAC58 -ZAT2         <---------TOE1(3)           <---------CCA1(2)                  <---------WRKY18(1) --- -------AGP1<---------ANAC58     ------->GAMYB       <---------GLK1(1)      <---------WOX13(1)    --- >ZAT2      <---------ANAC58    --------->MYB46(3)   --------->GLK1(1)    --------->ATHB12--------->WOX13(1)   gatctgcacaaggggcttaggtttcggttcatcaacagtcgtctcatatcatttgatttcctcaagagcgaaacagtgattgaccaagaaaacaatcagg  2040200                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                -----                                                                                               ------                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                           <---------ABI4(1)                   --------->ANAC58                                                        <-------TEIL           --------->LBD16                                                              --------->At4g35610          --------->LBD16                                                <---------ANAC58  --------->ZAT18         <---------HSFB2a(2)                                             <---------ANAC58 --------->ALFIN1 ->YAB1  --------->HSFB2a(2)                 *TSS                      --------->ALFIN1 --------->ZAT2 -ATHB12<---------LBD16                      <---------MYB52(1)  ---------->DOF2        <---------At4g35610 -------->TGA1     --------->ANAC46         <-------GAMYB      --------->ANAC58       <-----------RAV1(2) -------->HVH21    --------->ANAC58        <---------ANAC46    --------->ANAC58     ------->TEIL-----   ctgacgattttcccgagaaacacgcagaaaatgagagagaaaatgccgttgttttgaaatttgaaacgaaagggtgcgagggaatgaatcaggtgcggtg  2040300       --------->LBD16      --------->HSFB2a(2)      <---------HSFB2a(2) -----------ARR10 ---------ARR14(2) ---------ARR11(3) -------->ARR14(2) -------->ARR11(3) ---->ABI4(2) --->ALFIN1 --ANAC46 --ANAC58                                            --------->DAG2 --ANAC58                                   --------->DAG2 >ALFIN1                         ----------->RAV1(2)---------->DOF2                 <------ZmHOX2a(1) -DEAR3(1)<------ZmHOX2a(2) <-----------GT1---------->DOF2              <---------ARR11(3)        <-- ---->ZAT14            <---------MYB52(1) ---------->DOF2   ---------->DOF2      --------->YAB1<-----   caggtcttcccgatcactgttttctgttaatttccttctggcccaaaaggcccaaaaagcccaaaagactccaagttattcaataaggagtttttttttt  2040400                                                             --------->ARR14(2)                                                             <---------ARR14(2)                                                     <------NtERF2                                                   <---------DEAR3(1)                             <--                                                   <---------ANAC46                          <-------        <---------AHL20(2)      *TSS              <------NtERF2<---------LBD16               --------        --------->AHL20(2)    ---------->DOF2    <---------ATERF1(1)              ------->GAMYB   ---  --------->TOE2(3)      --------->DAG2         --------->ALFIN1 --------->LBD16 --------->MYB46(3) --------DOF2           ---------->DOF2         <---------DEAR3(1)  --------->ZAT14         <-------- ------GT1         ----------->GT1--------->ALFIN1--------->ATERF1(1)<---------ALFIN1  <---------CCA1(2)   cttttcttaaaaaaatgtttgtggaaaaaagggaaagtagggcaaggagggaggcggagagcaaaaccggaacactctcatcaacgagcgtctctctgga  2040500          ------>NtERF2 --------->ZAT2                                           <---------ARR14(2)         --------->ANAC46                                                        --------->ARR14(2) -------At4g35610       <---------At4g35610                                     <------ZmHOX2a(1) --HSFB2a(2)----------->RAV1(1)                                   <---------ANAC46--------->CCA1(2) ->HSFB2a(2)<---------ALFIN1   --------->ANAC58         ---------->DOF2   >>>>>>>>>TBF1          <--- ------>At4g35610       --------->At4g35610---------->DOF2     <---------DEAR3(1)--------->ARR11(1) -LBD16<---------At5g28300     --------->ANAC58    --------->TOE2(3)   >>>>>>>>>TBF1     --------->YAB1   agctcacattaccgccacatagtctctgctcacaagtattgagagaaaagaaacctttgaaagcgatggcgaagaagaagaaggatacgaagcatactcg  2040600                                                       --------->HSFB2a(2)                                                       --------->LBD16                                                      <---------LBD16                                                      --------->HSFB2a(2)                                                     <---------LBD16                                                   --------->DEAR3(1)                                                  --------->ATERF1(1)                                                  <------NtERF2                                                  --------->DEAR4(2)                                                 ------>NtERF2                                                --------->ANAC46                                              <---------ANAC58                                              <---------ANAC58                                          <---------GLK1(1)                                         --------->ARR11(3)                                         <-----------ARR10                                         <---------ARR11(3)                 <---------ANAC58        --------->ARR14(2)                                   -------                 <---------ANAC58        <---------ARR14(2)                                   <------            <-----------RAV1(1)         <------ZmHOX2a(1)    --------->ATHB12                --------      --------->ANAC58         <---------ARR11(3)<---------ATERF1(1)                   --------->ANAC58      --------->ANAC58   ------>NtERF2<---------TOE2(3)<---------HSFB2a(2)             --------->ANAC46 ------CCA1(2)   <---------ANAC46  ------>ZmHOX2a(1)------>NtERF2       <-----------GT1--------->ANAC58   tctctgcgaagccactggggcttgggccaccaaggtccttgaggattttcgcgcctccgggaacgattgtgagtttacctcttcgacccaaggaatttaa  2040700                                                       <---------ARR14(2)                                                       <---------MYB52(1)                                                       --------->ARR14(2)                                                 <---------GLK1(1)                                                 <---------At4g35610                                                 --------->At4g35610                                            <---------At4g35610                       <---------YAB1         <----------DOF2                    --------->At4g35610                 <---------TOE1(3) -->AHL20(2)                              <-----------RAV1(2)                   <---------TOE2(3) ---AHL20(2)                     <---------At4g35610   <---------GLK1(2)       ---------->DOF2  <---- ->AHL20(2)                   <---------At4g35610--------->ZAT2         <---------ATHB12      <------   aaagtttcttcctttgttcttaattgtgtttcttctgctaatcttcagatgagctccgatactctctacttgcaatggttttaaagttatagttagcttt  2040800                                                                                         --------->At4g35610                                                                                         <---------At4g35610                                                                                    =================                  <---------KAN4(1)                                                 <----------DOF2                  --------->HSFC1(2)                                            <---------ANAC58                  <---------HSFC1(2)   <-------GAMYB                            <---------ANAC55(2)                  --------->HSFB2a(1) <---------MYB46(3)      <----------DOF2   --------->ANAC55(2)                  <---------HSFB2a(1) <------MYB83           <---------ANAC58   <---------ANAC58                  --------->KAN4(1)   <------MYB46(1)        <---------ANAC58   <---------ANAC55(1)                 <---------KAN4(2)   --------->MYB59    <-------GAMYB       <---------ANAC58  --------->GLK1(1)--------->KAN4(2) <---------AtMYB61 <-----------RAV1(1)  <---------ANAC58 -----AtMYB61--------->YAB1<----------DOF2       ---------->DOF2           --------->At4g35610 ----DOF2  --------->MYB52(1)      <---------MYB52(1)  --------->ALFIN1    <---------At4g35610  <----   ggtgatttctatctatcggaatgttctgtctttttctgtttggttgaattggaaagtgtgttggctttctattgtgtagcttacgtctttgagcagcaac  2040900  Previous    Next  AGI:  At1g06660.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30820.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30820.2); similar to hypothetical protein OsI_013268 [Oryza sativa (indica cultivar-group)] (GB:EAY92035.1) Range:  from: 2037310    to: 2040245    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g06670.1    Description:  NIH (NUCLEAR DEIH-BOXHELICASE). similar to HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM), ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G30800.1); similar to hypothetical protein OsI_003809 [Oryza sativa (indica cultivar-group)] (GB:EAY75962.1); similar to hypothetical protein OsJ_003494 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13669.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69972.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374); contains InterPro domain Helica Range:  from: 2040432    to: 2047611    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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