Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              <---------ANAC58    <---------ARR14(2)                                            <---------ANAC58    --------->ARR14(2)                                          --------->ZAT14       <---------GLK1(2)                                          <---------ZAT14    --------->ANAC46               --------->ZAT18 <---------ALFIN1              --------->ANAC55(2)      --------->ZAT14         --------->ZAT14              --------->MYB52(1)      <-------TEIL            <---------ZAT14             ----------->HVH21      <---------ZAT14         --------->ZAT18         <------ZmHOX2a(1) ---------->DOF2              <---------REM1(2)   ---------->DOF2        <-------GAMYB   ctccaaagtacagagagaccactattcgagactacactgcttacttcagtgccaaaggacttgacggaacctctgcgttgctccatttcaaaatatgaaa  2035500                 <----------DOF2                                         <-------MYC3                 <---------DAG2                                          <-------MYC2              --         --------->STY1(2)                                               ------->MYC2           -----         <---------STY1(2)                                             ------->TEIL            <-----     --------->ZAT2                                                  <-------TEIL            <-------     <---------ZAT2                                                <-------MYC3        <---------AHL20(2)     --------->STY1(2)                                             ------->MYC2        --------->AHL20(2)     <---------STY1(2)                                             ------->MYC3     --------->ATHB12<  <---------ANAC46                            <-----------RAV1(1)  <-------MYC2    <---------YAB1 ---  <---------ANAC58                        <-----------GT1<---------ANAC46------->MYC3 <---------WOX13(1)  <---------ANAC58                     --------->ANAC55(2)      <---------ALFIN1<---------AHL20(2)---   catggcgagctagctactactttatcacacacatactgtatatgtaacatgttggagatgtgtgaaccacatgcatgtggaatttatgattaattaagaa  2035600                                                                    <------------------------ANAC81                                                          ------>ZmHOX2a(1)                                                          --------->LBD16                                                         --------->TOE1(2)                                                        ------>ZmHOX2a(2)                                                        ----------->RAV1(2)                                                       <------ZmHOX2a(2)                                                      <---------GLK1(2)    <-----------GT1                                   --------->ARR14(3) ------->TOE2(3)           <---------AtMYB61          <---------ARR14(3) ---->GLK1(2)              --------->ALFIN1           --------->ARR11(3)   <----------DOF2 ----GLK1(2)             --------->ALFIN1             <---------ARR11(3)  --------------->AGL15 --TOE2(3)            --------->DAG2                  <---------ARR14(2)---------->ID1         <----- ---------MYB52(1)--------->ANAC46                    --------->ARR14(2)<-----------GT1     <-------- ------>YAB1   --------->ZAT18                       --------->RVE1(1) <-----------GT1   <----------DOF2 -------->GT1  <---------ZAT18<---------ANAC46    ---------->DOF2   <---------AHL20(2)<-----------GT1   tcgttatttcggtttagtccacataaggtgtggtctgtatcattttgtctataaaagatcctgagactatttttttcctttttttgtttttctttatctt  2035700                                                <---------RAP2.6(3)                                                <-----------HVH21                                                <-----------TGA1                                             <---------At5g28300                                             <---------DOF5.7(2)                                           <---------ARR14(2)                                           --------->ARR14(2)                           ------------>CBF                                       <---------LBD16      <---------MYB46(3)   <---------CCA1(2)                                 <---------ANAC46          <--------P          <---------CCA1(2)                                 <---------AtLEC2         <-------GAMYB      --------->TOE1(3)     <-----------GT1             <---------ANAC58     --------->ANAC55(2)    --------->TOE2(3)  --------->YAB1                 ----------->RAV1(2)  <---------ANAC58    <-----------GT1 -----DOF2                       ----------------->AGL1  <---------MYB46(3)  <---------DAG2    ------ -ARR11(3)                       <---------ANAC58     <---------ANAC58  <---------ATHB12<---------YAB1   tctgtaataacttaacttcttgttgacttagacttgcctggtccggttaccgtcatacgtggttgtttttgtcaataaaccttatctcttatcaatggac  2035800                                                                      <---------MYB46(3)                                                                     <---------YAB1                                                                     <---------WOX13(1)        <---------REM1(1)<---------ATHB12                           <------------CBF --------->ATHB12 ------>CBF          ------------>CBF              <---------YAB1 <---------YAB1   *TSS   aatggttttgctgtagcaactggtccaatctttgaacttaagaaaaacgtttcattcttgttttatgtgtgattgttgttctgtttttgatttgagaaac  2035900                                     <---------ANAC58                           <----------DOF2                           ------>ZmHOX2a(1)        ---------->DOF2                           =================HOX2a_HOX2a                          --------->TOE2(3)     --------->At4g35610               ---------->DOF2                    <---------WOX13(1)          <---------At4g35610             ----------->HVH21   -                 <---------YAB1      ------>ZmHOX2a(2)              --------->ANAC58              <--           --------->ICU4------>ZmHOX2a(2)    <---------ZAT18       --------->ANAC58  <------ZmHOX2a(1)         <---------At4g35610         <---------ANAC58    <----------DOF2      --------->ALFIN1<------   aaaaacgatggagatgatgaagattgatcctttattcgatcgtgccagtgagcttaaagctttcgatgaaacgaaaacgggtgtgaaaggactcgtcgac  2036000                           --------->YAB1                     ------->TEIL                                                                   <                  --------->ANAC58                                               --------->REM1(1)  -                  --------->ANAC58             <-----------GT1           --------->ARR14(2)       ---       <-----------GT1  <----------DOF2<-----------HVH21                 <---------ARR14(2)   <------ZmHOX2a(2) -------->LBD16   --------->ANAC46    ------->GAMYB  ------->GAMYB     ----------->HVH21      ======= -------LBD16    <---------LBD16     <<<<<<<<<TAC1 -------->P         --------->TOE2(1)      <------- ---ATERF1(1)--------->ARR14(2)      <------------AtMYB77             --------->TOE1(1)      --------   tccggagtttcacaagttccacgcatctttcatcatccaactgtcaaattatcaaccccaaaaccacttccctcggacctgctacatctcaagacgatcc  2036100                                                                                      <---------ANAC58                                                                                      <---------ANAC58                                                                                 ====================         <---------LBD16                                                         ====================         <---------HSFB2a(2)                                                     --------->O2        ------>ZmHOX2a(2)                                                        <---------TGA1a        ============================HOX2a_HOX2a                                --------->ZAT14        ==============HOX2a_HOX2a                                              <---------ZAT14   =================================HOX2a_HOX2a                              --------->At4g35610   <------ZmHOX2a(2)           --------->ANAC58                           <---------At4g35610    <---   ===================HOX2a_HOX2a                                         <---------ZAT2        ----- ------->GAMYB <------ZmHOX2a(1)         --------->ANAC46                 --------->ZAT2--------->GLK1(1) ---------MYB52(2)         --------->LBD16--------->ZAT18                 --------->At4g35610  <----- -------->MYB46(3)        --------->HSFB2a(2)                          --------->At4g35610     <----- ------>MYB52(1)          <---------HSFB2a(2)                     <---------TOE2(3)--------->ALFIN1 =====================HOX2a_HOX2a    ---------->DOF2             ==========================bZIP_DOF --ARR14(2)   ----------->HVH21--------->ANAC58============================================bZIP_DOF ->ARR14(2)   <---------SPL7 <------ZmHOX2a(1) ---------->DOF2   ---------->DOF2 <---------O2  ------   caacgatcgatctcggaggacgggacttccaggacgcgattaagcgcaataacgcgattgaagagattaaagaagcagcagcgaagtggggtttcttcca  2036200      <---------ATHB12      --------->MYB46(3)     -------->P ==============================bZIP_DOF                                --------->YAB1 =============MYC_MYB                                            --------->ANAC58 ------At4g35610                                    <---------ANAC58  <---------ATHB12 ---->LBD16                                         <---------ANAC58--------->WOX13(1)         ------ ------RAV1(2)                              --------->DAG2       --------->ANAC58         --------->GLK1(1) ----HSFB2a(2)                             ---------->DOF2      <-------PIF5        <------ZmHOX2a(1) --->HSFB2a(2)      <----------DOF2   ----------->GT1           ------->PIF5    --------->ALFIN1   ggtgatcaaccatggagtttcgcttgaacttcttgagaagatgaaaaaaggagttcgtgacttccacgagcaatcacaagaagtgaggaaagaattctac  2036300                                                         --------->At4g35610                                                         <---------At4g35610                            <---------AHL20(2)           --------->ZAT2                             <                --------->HSFB2a(1)          <----------DOF2                                        -                <---------HSFB2a(1)       ------>ZmHOX2a(2)----------->RAV1(1)                      <          --------->At4g35610   <---------AHL20(2)       <---------ZAT2                             < --->ZAT14<---------At4g35610 --------->ANAC55(2)       ----------->RAV1(1)  <----------DOF2      ---   agtcgcgatttcagcagaaggtttctgtatttaagtaatttcgatctctttagttctccagcagcaaattggagagacactttctcttgtaccatggctc  2036400  Previous    Next  AGI:  At1g06645.1    Description:  pseudogene, similar to CmE8, blastp match of 51% identity and 3.9e-106 P-value to GP|15721876|dbj|BAB68392.1||AB071820 CmE8 {Cucumis melo} Range:  from: 2034228    to: 2035495    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g06650.1    Description:  2-oxoglutarate-dependent dioxygenase, putative. Identical to 1-aminocyclopropane-1-carboxylate oxidase homolog 4 [Arabidopsis Thaliana] (GB:Q8H1S4;GB:Q3EDH6;GB:Q94K40;GB:Q9SHK4); similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G06640.2); similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G06640.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 2035883    to: 2037362    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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