Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------YAB1                                                                                     <---------YAB1                                                                                  --------->AHL20(1)                             <---------ANAC46                                    --------->YAB1                          ----------->HVH21                                      --------->AHL20(2)                          ----------->TGA1           ------>NtERF2     --------->ARR14(2) ------MYB46(3)      --------->YAB1                 --------->ANAC46   <---------ARR14(2)<-----------RAV1(1) --AGL15            <---------YAB1     <---------HSFB2a(2)       <---------ARR14(2)  <---------AHL20(2) ->AGL15          --------->YAB1       --------->HSFB2a(2)       --------->ARR14(2) <---------AHL20(1)   tgttgccaacttgccattaaccatgatagtgacgcaggcttccaaaacatttcgacgcgagagccactatccgaatacttgaataatattattgttgcga  2025200                                               --------->ATHB51                                               --------->ATHB12                                               <---------ICU4                                               -------->ATHB1                                              <---------ATHB51                                              --------->AHL20(1)                                              --------->ICU4                                              <---------YAB1                                              <---------AHL20(2)     --------->ANAC55(2)                                      --------->YAB1                 --------->ANAC46                                   <---------ICU4                <---------AHL20(2)                                   --------->YAB1              ----------->TBP                                 --------->AHL20(2)           <---------AHL20(1)                              <---------AHL20(2)              <---------ARR11(3)    <---------MYB46(3)         <---------ARR11(3)   --------->AHL20(2)         ------------>CBF         <---------At4g35610         --------->ARR11(3)   --------->AHL20(1)        <-----------GT1----------->HVH21     <-------     ---------->DOF2       --------->YAB1   --------->YAB1    --------->AHL20(1)  --------->At4g35610   ttttttaaaaaggtcttgctgatggccaaaaataaaataataacaaaaattattgtatatacaatatataaacgtgacaaaatgagctgttgaatatgat  2025300                                                                          <---------ZAT18                                                            --------->At4g35610                                                            <---------At4g35610                                                            xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        <---------REM1(1) --------->ZAT18                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                        xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                        xxxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                        xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                       xxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxxxx>smallRNA(le3)                                                       xxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           <-                                                       xxxxxxxxxxxxxxx>smallRNA(fl3)               <-                                                       xxxxxxxxxxxxxxxxxxx>smallRNA(s2)           <--                                                       *TSS------->TEIL---------->DOF2           ----                                                       xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    ----                                <------------CBF       xxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <----                     --------->AHL20(2)                xxxxxxxxxxxxxxxx>smallRNA(fl3)         xxxxxxx                     <---------AHL20(2)                xxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxx                    <---------AHL20(2)                 xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxx                    --------->AHL20(2)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxx                    <---------AHL20(1)                 xxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxx                 <---------AHL20(2)                    xxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxx                 --------->AHL20(2)                    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   xxxxxxxxx                <---------AHL20(2)                     xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    xxxxxxxxx                --------->AHL20(2)                    xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxx               <---------AHL20(2)                    xxxxxxxxxxxxxxxx>smallRNA(s)           xxxxxxxxx           <---------CCA1(2) ------------>CBF     <---------LBD16      xxxxxxxxxxxxxxxx>smallRNA(se3)   <---------ZAT14  --------->AHL20(1)       <-----------TGA1    <---------At4g35610  <---------ANAC58 --YAB1  <---------ANAC46  <-----------GT1   <-----------HVH21 <-----------RAV1(2)    <---------ANAC58   actagtatagttcgtatattaatttattttgaccaattgtacattttcgtcatcggggatgtagctcagatggtagagcgctcgcttagcatgcgagagg  2025400                  --------->GLK1(1)                  --------->At4g35610              --------->ANAC58              --------->ANAC46        xxxxxxxxxxxxxxxx>smallRNA(s)      ------>ZmHOX2a(2)                                                    ------->MYC4      xxxxxxxxxxxxxxxx>smallRNA(i)                                         ------->MYC3      ===============================HOX2a_HOX2a                           <-------PIF5     xxxxxxxxxxxxxxxx>smallRNA(s)                                          ------->MYC2    --------->ARR14(2)                                                     <-------MYC3    <---------ARR14(2)                                                     ------->PIF5 ---------LBD16  ------->TEIL                                              <-------MYC2 --------TOE1(1)<---------ALFIN1                                          <---------PIF3(3) --------ANAC46--------->LBD16                                            --------->TGA1a -----TEIL   <---------LBD16                          <---------ANAC58    <---------TGA1a ----->CCA1(2)--------->ANAC58                    <---------AHL20(2)      <---------O2 ----->ALFIN1--------->ANAC46                   <---------YAB1            --------->O2 -----SPL7 xxxxxxxxxxxxxxxx>smallRNA(le3)     <---------ICU4              --------->PIF3(3) xxxxxxxxx>smallRNA(se3)                     --------->ICU4             <---------ALFIN1 xxxxxxx>smallRNA(i)                         <---------YAB1            ---------------->PIF3(2) xxxxxxxx>smallRNA(se3)                    --------->YAB1       --------->ARR14(2) xxxxxx>smallRNA(le3)                      <---------ICU4      <---------MYB52(1)         --------->ATHB51 xxxxxxx>smallRNA(s)                       <--------HAHB4     --------->LBD16      ----------->GT1 xxxxxxx>smallRNA(si3)                    --------->ICU4     --------->LBD16--------->ALFIN1 xxxxxxx>smallRNA(se3)        --------------->AGL15   <---------ANAC58----------------->AGL1  ------- xxxxxxx>smallRNA(le3)        ------>ZmHOX2a(1)<---------AHL20(1)    <-----------------AGL1  <------- xxxxxx>smallRNA(se3)         <---------------AGL15 <-----------GT1<-----------GT1 <---------ANAC55(2) xxxxxxxxx>smallRNA(le3)   <-----------GT1<---------YAB1    <---------LBD16<-------MYC4   --------->AHL20(2)   tacggggatcgataccccgcatctccattttcctattttttgttatcattattttttcttgtcccggtttttccccacgtgggaaacgtgaataatttaa  2025500                                                                                     ------>MYB83                                                                                     ------>MYB46(1)                                                                                    --------->MYB52(1)                                                                                  <---------MYB55(2)                                                                                  <---------MYB52(2)                                                                      <------ZmHOX2a(2)                                      ----------->GT1                 --------->CCA1(2)                                 --------->WRKY45                    --------->ARR14(2)        ------->TEIL             --------->WRKY12                    --------->ARR11(3)    <---------    --------------->AtSPL8       --------->WRKY38(1)                 <---------ARR11(3) ------------>CBF    <---------------AtSPL3      --------->DOF5.7(2)                  <---------ARR14(2)------->GAMYB -->AHL20(2)                   <-------GAMYB                  <---------ZAT6      --------->MYB46(3) --AHL20(2)                   <---------MYB46(3)  <-----------GT1    --------->AGP1--------->AtMYB61*TSS   ctaagacatgtacttcttctcatctatcttcgtcgttgactcgtgaaacttttgacaacttgtagtattaagatccaacttcaaaccaacggcaattgca  2025600                                         <---------ALFIN1                                        <---------ZAT18                                        --------->ZAT14         --------->ANAC46               --------->ZAT18                                       -------         --------->ANAC58               <---------ZAT14                                   <---------ANAC46         --------->ANAC58            --------->At4g35610                                  <---------ANAC58   <---------At4g35610        --------->LBD16                   ---------->DOF2           <---------ANAC58   --------->At4g35610       <---------HSFB2a(2)        --------->ZAT6     --------->ANAC46 --------- ---CBF---------->DOF2       --------->HSFB2a(2) ------>ZmHOX2a(2)   <----------DOF2  --------->DEAR3(2)   ttttcagctaaaagcaatggagtcatcacttccccaagttgctgcacttgatcgttcaactctactcaaagctttcgacgagactaaaaccggcgtgaaa  2025700                                                  --------->LBD16                                                  ------>NtERF2              --------->ARR14(2)                <---------LBD16                          --------->GLK1(1)             <------NtERF2                    --------->AtMYB61                     <---------At4g35610            --------->LBD16                   --------->DEAR3(1)                    =================           --------->RAP2.6(2)              ------->TEIL                            ------>ZmHOX2a(1)           --------->LBD16                 <---------ALFIN1                      ------>ZmHOX2a(1)          <---------LBD16              <---------ANAC46                          ====================        --------->DEAR3(1)             <---------ANAC58 <----------DOF2       ------>MYB83        --------->ANAC46               <---------ANAC58 --------->TOE2(3)     ------>MYB46(1)        <---------DEAR3(1)  --------->TOE1(2) <---------ALFIN1              --------->AtMYB61 --->DOF2 <------NtERF2  --------->GLK1(2)--------->ZAT18                <---------ALFIN1<---------GLK1(1) -->HVH21------>NtERF2  <---------GLK1(2) <---------ZAT18               --------->MYB46(3)  <--------   ggccttatcgacgccggaatcacagagattccttcgatatttcgtgcacctccggctactttaacaagtccaaaaccaccttcctcctctgatttctcca  2025800                                                 <---------ANAC58                                                 <---------ANAC58                                                <---------ZAT2                                                --------->ZAT2            <------NtERF2                                               --------->ARR14(2)        ----------->RAV1(1)                                               <---------ARR14(2)       --------->ANAC58                                              <------NtERF2             --------->ANAC58                                             --------->LBD16           <---------LBD16                                            <---------DEAR3(1)        ===============================                                            <---------ANAC46          --------->O2                                           ------>NtERF2              <---------bZIP60(2)                           --------->ANAC58<---------LBD16            <---------O2                           --------->ANAC58<------NtERF2              <---------TGA1a                         <---------ANAC46  --------->ATERF1(1)     ----------->HVH21                        <---------SPL7    <---------ATERF1(1)      <---------ARR14(2)                        <------NtERF2    <---------DEAR3(1)    <------ZmHOX2a(2)                      <---------------AtSPL3--------->ALFIN1  <---------ARR11(3)                      --------->ALFIN1  <---------LBD16       --------->ARR11(3)                 <---              ---------->DOF2          --------->O2 <------MYB46(1)--------->ARR14(2)           ----- --------->ANAC46   <---------bZIP60(2)<---------bZIP60(2)    <---------ARR14(2)               <----- <---------ALFIN1  --------->ALFIN1    --------->ANAC46       --------->ARR14(2)               <----- =================HOX2a_HOX2a          <---------O2 <------MYB83------>ZmHOX2a(2)--------->CCA1(2) =================HOX2a_HOX2a       <------ZmHOX2a(2)       ----------->ARR10<------NtERF2  <-------- ---GT1    ------>ZmHOX2a(2)       <-----------HVH21<---------ANAC46 --------->ATERF1(1)<---------ARR14(2)   tccccacaatcgatctcaaaggaggtggcacggactcgatcacgcggcggagcttggtggagaagatcggagacgcggcagagaaatggggatttttcca  2025900             <---------ARR14(2)         --------->ANAC46        <---------LBD16       <---------ALFIN1      --------->MYB46(3)                                --------->MYB52(2)     -------->P                                       <---------MYB52(1)    --------->WOX13(1)                              <---------ANAC58        <---------ZAT14 =============MYC_MYB     <-----------RAV1(1)       <---------ANAC58        --------->ZAT14 ------At4g35610          --------->ALFIN1       <---------ARR14(2)  --------->ANAC58 ---->LBD16  --------->ARR14(2)                  --------->ARR14(2)  --------->ANAC58 ------RAV1(2) ------>ZmHOX2a(2)         <---------WOX13(1)      --------->ANAC58             <------ ----HSFB2a(2)<------ZmHOX2a(2)<---------HSFB2a(2) <-------TEIL  --------->ANAC58        ----------->GT1 ---GT1------->GAMYB   ------->TEIL   <---------YAB1<---------ANAC46 --------->ANAC46---------->DOF2   ggtgatcaaccacgggatcccgatggatgtgttggagaagatgatagatgggattcgtgagtttcacgagcaagacactgaagtgaagaaagggttttac  2026000                                                            <------NtERF2                                                            --------->ATERF1(1)                                                            --------->RAP2.3(1)                                                           ------>NtERF2                                                           <---------ATERF1(1)                                                           <---------RAP2.3(1)                                                           <---------ERF1                                                           <---------ORA47(2)                                                          <---------RAP2.3(3)                                                          <---------RAP2.3(2)                                                          --------->ATERF1(2)                                                          --------->DEAR3(1)                                                          <---------DEAR3(1)                                                          <---------ATERF1(2)                                                         --------->ATERF1(1)                        -            <XXXXXXXXXXXXXXXXXXXXMIR844*                 <---------ABI4(1)                          <         --------->ZAT2                                 <---------ATERF1(1)                         -         <---------ZAT2                                --------->DEAR3(1)                           <     <------ZmHOX2a(2)                                 <---------ATERF1(2)                          -     --------->CCA1(2)                                 <---------DEAR3(1)            <-------GAMYB  -    <---------ARR11(3)                                --------->DEAR3(2)            <---------MYB46(3)    --------->ARR11(3)                               --------->MYB52(1)           <---------ANAC58  <    --------->ARR14(2)        --------->RAP2.6(2)  ----------->HVH21              <-------GAMYB------    --------->AGP1          --------->At4g35610  --------->At4g35610       <-------TEIL  <-----------GT1    <---------ARR14(2)    --------->ANAC46------>ZmHOX2a(2)<---------DEAR4(2)     <---------ANAC58  < -----GT1<---------At4g35610<---------At4g35610  <---------At4g35610      --------->CCA1(2)--------->ANAC46   tctcgagatccagctagtaagatggtatacagcagcaacttcgatctgtttagctcaccggcggcgaattggagagatacacttggttgttatacagcac  2026100  Previous    Next  AGI:  At1g06610.1    Description:  pre-tRNA. tRNA-Ala (anticodon: AGC) Range:  from: 2025355    to: 2025427    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g06620.1    Description:  2-oxoglutarate-dependent dioxygenase, putative. Identical to 1-aminocyclopropane-1-carboxylate oxidase homolog 1 [Arabidopsis Thaliana] (GB:Q84MB3;GB:Q9SHK4); similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT3G61400.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66433.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 2025600    to: 2027270    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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